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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0495500 |
| Transcript ID | LotjaGi3g1v0495500.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|D8QUA3|D8QUA3_SELML Histone H3; Found in the gene: LotjaGi3g1v0495500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91379658..91380077) extracted from Lotus japonicus Gifu genome v1.2.
CTGACCCAAATGGCTCGTACCAAGCAGACTGCACTGAAATCCACCGGAGGAAAGACGCCGAGGGTGAGCCTGGCGACCGT CGCCGCCCGCAAATCTGCCCCGCCCACCGAAAGAGTGAAGAAGCCCCACCGTTACAGGCCTGGCACTGTTGCTCTGAGGG AGATCCGCAAGTACCAGAAGAGCACTAACCTTCTCATCCCGAAGCTTCCATTCCAGAGGCTGGTCAAGGAGATCGCTCTA AACTTCAAGGCTGATTTCCGCTTCCAGAGCAGCGCCGTCTGGGCTCTTCAAGAGGCCGCAGAGGCGTATTTGACGGGCTT GTTCCAAGACACCAACCTCTGTGCCATTCATGCTAAGAGGGTGACAATCATGCCCAAGGACATTCAACTAGCCCGCAGGA TTAGAGGCGAGAGGCCTTAG
CDS sequence (LotjaGi3g1v0495500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGTACCAAGCAGACTGCACTGAAATCCACCGGAGGAAAGACGCCGAGGGTGAGCCTGGCGACCGTCGCCGCCCG CAAATCTGCCCCGCCCACCGAAAGAGTGAAGAAGCCCCACCGTTACAGGCCTGGCACTGTTGCTCTGAGGGAGATCCGCA AGTACCAGAAGAGCACTAACCTTCTCATCCCGAAGCTTCCATTCCAGAGGCTGGTCAAGGAGATCGCTCTAAACTTCAAG GCTGATTTCCGCTTCCAGAGCAGCGCCGTCTGGGCTCTTCAAGAGGCCGCAGAGGCGTATTTGACGGGCTTGTTCCAAGA CACCAACCTCTGTGCCATTCATGCTAAGAGGGTGACAATCATGCCCAAGGACATTCAACTAGCCCGCAGGATTAGAGGCG AGAGGCCTTAG
Protein sequence (LotjaGi3g1v0495500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARTKQTALKSTGGKTPRVSLATVAARKSAPPTERVKKPHRYRPGTVALREIRKYQKSTNLLIPKLPFQRLVKEIALNFK ADFRFQSSAVWALQEAAEAYLTGLFQDTNLCAIHAKRVTIMPKDIQLARRIRGERP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 5.7E-89 | – | |
| PANTHER | 1 | 135 | 135 | 5.7E-89 | ||
| Pfam | 1 | 132 | 132 | 6.2E-49 | ||
| Gene3D | 2 | 136 | 135 | 1.4E-71 | ||
| SUPERFAMILY | 2 | 133 | 132 | 1.61E-52 | ||
| PRINTS | 3 | 17 | 15 | 7.7E-74 | ||
| PRINTS | 17 | 31 | 15 | 7.7E-74 | ||
| PRINTS | 34 | 55 | 22 | 7.7E-74 | ||
| SMART | 34 | 136 | 103 | 6.5E-68 | ||
| PRINTS | 58 | 75 | 18 | 7.7E-74 | ||
| ProSitePatterns | 67 | 75 | 9 | - | ||
| PRINTS | 80 | 98 | 19 | 7.7E-74 | ||
| PRINTS | 98 | 114 | 17 | 7.7E-74 | ||
| PRINTS | 114 | 135 | 22 | 7.7E-74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0495500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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