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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0495600 |
| Transcript ID | LotjaGi3g1v0495600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H3; TAIR: AT4G40030.1 Histone superfamily protein; Swiss-Prot: sp|Q402E2|H33A_LILLO Histone H3.3a; TrEMBL-Plants: tr|A0A0B2S4D2|A0A0B2S4D2_GLYSO Histone H3; Found in the gene: LotjaGi3g1v0495600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91382278..91382900) extracted from Lotus japonicus Gifu genome v1.2.
CACAAAGCCAAATTCACTTCTAACTTCTGAGCCTTTTGCAATTTTCAAGAGCTAGGTTTTCATATCCAGATGGCTCGTAC CAAGCAGACTGCAAGGAAATCCGCCGGTGGCCCGCCAAGGAAGTTCGCTACCAACGCCCAGCCAAGGGAGTTCTCAACCA TGGCTGCCCTCAAATGTTGCCCGATCACCGCCGGCATCAAGAAGCCCCACAGTTACAGGCCTGGCACTGTTGCTCTGAGG GAGATCCGCAAGTACCAGAAGAATACTGACCTTCTCATCCCGAAGCTTCCATTCCAGAGGCTGGTCAGGGAGGTTGCTCA GAACTTCAAGGCTGATCTCCGCTTCCAGAGCGACGCTGTCGACGCCCTTCAAGAGGCCGCCGAGGCGTTCCTGGTTGGGT TGTTCGAGGACACAAACCTCTGCGCTATTCATGCCAAGAGGGTGACCATCATGCGGAAAGACCTTCAACTGGCTCGTAGG ATTAGGGGTGAGAGGAATTAGTATCGTTTGTTGAAGAAATTTAGGGAAACCTTTGCTAGGGCTTTTCTTATTTTGTTATT CGATCTGTTTTCCCTTCATTTCTGGAATAATTATGTCATCAAACATAAACTTCTGTCAAGGAG
CDS sequence (LotjaGi3g1v0495600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGTACCAAGCAGACTGCAAGGAAATCCGCCGGTGGCCCGCCAAGGAAGTTCGCTACCAACGCCCAGCCAAGGGA GTTCTCAACCATGGCTGCCCTCAAATGTTGCCCGATCACCGCCGGCATCAAGAAGCCCCACAGTTACAGGCCTGGCACTG TTGCTCTGAGGGAGATCCGCAAGTACCAGAAGAATACTGACCTTCTCATCCCGAAGCTTCCATTCCAGAGGCTGGTCAGG GAGGTTGCTCAGAACTTCAAGGCTGATCTCCGCTTCCAGAGCGACGCTGTCGACGCCCTTCAAGAGGCCGCCGAGGCGTT CCTGGTTGGGTTGTTCGAGGACACAAACCTCTGCGCTATTCATGCCAAGAGGGTGACCATCATGCGGAAAGACCTTCAAC TGGCTCGTAGGATTAGGGGTGAGAGGAATTAG
Protein sequence (LotjaGi3g1v0495600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARTKQTARKSAGGPPRKFATNAQPREFSTMAALKCCPITAGIKKPHSYRPGTVALREIRKYQKNTDLLIPKLPFQRLVR EVAQNFKADLRFQSDAVDALQEAAEAFLVGLFEDTNLCAIHAKRVTIMRKDLQLARRIRGERN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 142 | 142 | 8.9E-80 | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| Pfam | 1 | 139 | 139 | 6.1E-47 | ||
| PANTHER | 1 | 142 | 142 | 8.9E-80 | ||
| Gene3D | 2 | 143 | 142 | 2.1E-64 | ||
| SUPERFAMILY | 2 | 141 | 140 | 1.77E-45 | ||
| PRINTS | 3 | 17 | 15 | 7.6E-64 | ||
| SMART | 41 | 143 | 103 | 7.6E-68 | ||
| PRINTS | 41 | 62 | 22 | 7.6E-64 | ||
| PRINTS | 65 | 82 | 18 | 7.6E-64 | ||
| ProSitePatterns | 74 | 82 | 9 | - | ||
| PRINTS | 87 | 105 | 19 | 7.6E-64 | ||
| PRINTS | 105 | 121 | 17 | 7.6E-64 | ||
| PRINTS | 121 | 142 | 22 | 7.6E-64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0495600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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