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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0498800 |
| Transcript ID | LotjaGi3g1v0498800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CRS1/YhbY (CRM) domain protein; TAIR: AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; TrEMBL-Plants: tr|A0A151TG13|A0A151TG13_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0498800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91750064..91757893) extracted from Lotus japonicus Gifu genome v1.2.
CTCGCTCTATGGTTACAGAGAGAATCGTTGTCAGCTGCTTAGTGTCTTTCTTTTCGATTTGGTTTCTGATGAAGCAAAAA ATTGAAAAGAAAAAACCTTTGCATTGCACAGGCTACTTACTAGTCATTATTTGAATCTATACACAGGAGACAGCCCTGGA TCAGAGTCAACAACCGAATAATTAAAGTCTATCAAGGCATCTGAATGCCTGTTATGATTTATCATATTGTTAGCTAACAC TTCACAAGAATGGACTAAAAAAGGACCTATACATTCACTGAACTAATTTCTTCTACCAACTGAAAAATACTACAGCATAA AAATCAATACAATGAATTCCATTGTATCAAACTCTTCCATGAAGAAGAGGAACAAAGCAGATACCCAAAGGTCAGCAGTT CTCAGATATCATTGCATGCTTCATCTCACAGCACTTTTGGACACTGATAGTTTGATTCCATATTTCATGCAGTGGAAAAT GATAAGATAATTGAAAGCTCAACCTATCAGTGACTCTACTCTTCTTTGGTTTCCATGTCCTTCACACTGTCTACAATGTG CTGTATTTTCTTTGAAAGGCTCTCATTGTGCTCATCAATGTAATCAAATATCAATTCAAGATGTCTTTTATAAGTTGCAG AACGCTTCTTCTCTATTGCCAACTGCTGAGAAAGTTCCCGAATTTTATCGTGCTCATTCTGGAAAAAGCATAAAAACTCA GAGGTAAGTAGGAAAAAGAAAAAGGAACTGTGAAGGAGCGATGATAGTGCTATTAAGGAAATTTCAAACTAGCAATTACA TTATGAGATAAAGGGTTTCTCTAAGGGCAATGGCAACATAAGAAGAATGCTCTAATTTCAAAAGATAAGGGGGCAATGCA AATGAGTTAAAATTCTCCCTCCTCAGTCCTCTCCCAAAAAAAAAGCAACAAGTATTCAAGGAAAAGAGGATGTATGTGCT CTAATATTTAGCAAAATAGTAGCATCATGATCTGACAGTCTGACACAGGTTCCATATCCAATTTATCGAGCACAAGGTAA CAATTAAAACAATAAACTAAGACAGTACTATATACAATTGTTCAGTAGTGAAAGCACAGGAACTGACCGGATATTGTTCA TATACGCAATCCCTTCTACCTTTTCCAGGACTCAGAGGATGTGTGTGCTCCTTTACAAACTTTGTAACAACCCATTTACC AGAACTAACTTTCCTCACCAAGATCATTGCCCTGCAACCAACCCTTGTCTCTGCCCTTTGCCTTACAATCTTTTCACGCT TGTCAGGCATTCTGTAACCCTCTTTGTTGCAAACTAGAGCCCGTCCAATAACAGTTCCATCACGCCTTGATCGTGAGAGT TTACTTACGCGTATGATGAATCCAACTTGAGTGGCATATGCATTATAAAATGCATGTGCTGCTGCTTCCGAATCAAACTC CAGACCCACATAGGGCTCATCAACAGATGCAAGTGATACGGCAGGAACTGCTGATGGTATAGTTTCTCCTCCAGAAGAAT CTCGAGTCACATTATCATCTTGATCTTGTTTGTAAGGTTCAGCAGAACTTCCTCCAGCTCTGTTTTCATCAGCTATACTG CTGACCTCACCAATAGCAGCATTTCCGGATGTCTCGCCATTGATAGAGCCATCAACCGCAAACTCCACTGCATCAACAAA AAGTTTTCTATAAGATTATCAATGTCCTGTTTATATCTACAAAAAGTCTATACATTTAATGAACAAAACTCTCATTTAAA ATAAAAACAAATAACATGTCAATAAATATAGTCCAGATCCCAAAATTATCAAATACGTAAATATTAGTATCCATTTCAGA TTCTTGACTAATTGAATAACTGTTACTGGTTTGTAAGGTTTTTATTTAGCATCACAATTGTTCAATGCTGTAAATATAAG TACATGAATCTGTAGGCTGGTTAGTCACACAAAATTACCAAATTCTATGTGGTATCAGTATTCTAAAGATTCAATTTTAC CACCGTGCCTTTTTCCCCCTAGTGGCCCTTCTAATTTCCAATTTATGTGCCCTGATTGTTAAAGACAGCAGCCATGCCTC CACCAGATGACACTTCTCTGGCGTATGTCTCCACCATAGGCCATCATCAACCGTGCCAGATACCCTGATGACACCCACTG GGCTGCCACTGCACGTGCCGCCACGCGTGCATCCCTTTTGTGCACGTTTCTGACATGCACCGCCACGTCTGGGCGTGTGA GCTACTTTTCCAACCACCCACACCACAGCCTATCCTAGACCTACACCTCGTTCTCACTCACCTCTACCTCAACATGTCCG CATATGGCACTGGGTTTGATGCCTCTTCGGCCTAGATTAGGATGTCAGTTAAGAGTGAGAGAGGAAGTGCTACATATGAC ATAGAAATGGAAAGTGACTTCATCATTGTGATCATTGTAATACAGAACTTGGGAAAGCCGGAAAGATCTGTATCTCTCAA ATATCCAGAAGTATCAACAGTTTTTCTTCACCAAACAGTCTTTCTTACTTCTTTAGTGTCTGTTCCTACCAAGGACAAAC ATATTCTAGCTTGTGTCTGTTCCTACCAATGACATACAAATTCTAGCTTGAGGGGGAGTGTTAGAATCAAATATGTAAAT ATTAGCTAATTAGCATAACGGTTACTGACATAGGGGCTTTGATTTAGCATTACATTCATTGTATTCTATGCTTTACATGA TATAAATACATGGTTGTGCAGACTGACGACACACATAAATTCACCAAGTTCGGTAAGTACAACTGTACAACATGGTTTAC AAGAAGATCAGAAAAGCAAACAAAAACCATATAATTAACTACACAACCGCCAAAACAAAACGAAATCATAATAAATAAAC AAAATAGAGCCTTTAAATCACCAAGCATTTGCCCCACAACAACCAAAACAGATTGCCACACTGAATCCGAAAACAAAACC CAAAGTCAGGAAGAGTTTCTGTCCTTCTGAAGATTCCCACACTACGCAACAACCAAACGTGCTAATATATTTTACAGAAA ACAGAATTTCCTTCCTTTTTACTCCAAAGCTGGTAAAATGACTGAACAACAAGCTCCAGGTTCTACAGAGTATTCCACTT TAATCCGAAAATACAGATAATATGGTCTCATACATTTTAAGGCATTAGTGCAACATAAGAGCATGAGTTTCTAAATTATA TGGTCTCATAAGTATGATCTTCACAGTTTCTCCCACCTTAAACAATAAAGGGAAACAGGAGTGACAACTCGACAATTATA ACGCATGGTATCTACATCGACTAAACCAAGCACTCCAAATTTTGCCCTAAAATAACATTCCGCAGCCCTGGAGTGTACTG ACAATCAAATCTTAAAAATGTCATAATGACACTGATATCTTTGGCTATAAAAACACTACATAAATTGAAAACCTAATCAA CTCAACTACATCAGAGTGGAGCTTTACTCCCCAGTACAGCAAGCTCCTCAGAAATTAAAAGGACATCATGCATCTAAAGG GTAAAGCCCAACTTCAGATTATGTAATGATAAACAACACAAAAACTACATAAAGTCCTAAGGATGCTTGCAGTGTTGTTC TCATAAAAAAAACATTCCTACATTATAATGAAAATAATGCATATCACAAGTGTCTATCACAGAAAACACCAACAACGTCA AGCTTCAATTTTGAGTAATTTATTGCATACCCTTTACGACTCTATGAAGATACACACAGTAAACGGATTCAGGATCTTAC AATTGTACCAGTACCACAGTCATTATTAAGAAAAGAAAACCCTAATTTCCACCAGAATCACAATTTTCACAGCCGACAAG AATTAAAAAATTGAAAAGAATTAGTCAAAAGAAAAAAGAAACACTCACTCAATGATCGATTGTCGTAGAAACAAAACCTT GTTTCGTGATTTCCCTAATTATTATTTGTTGATCCTATGTTCCGCGTTCCAGAGAGAAACACCACACCACAATACAGAAG AAGAGATTACAGTGAGGCACGGTATATATGGACCCTGAGTAACACAGTGAAAAAGTCAGCATTTTTATTGGATAGCATCA CGTGAAAAAGTCAACCATTTTTATTGACCCGTTAGATTCGTGCCACGTGTTTCATGAAACCCGACCCGATCCAATACGGG TGGTGCACCGTGCACGCGAAGAAGAAAAAACAGTAAACACCGCACGCTCACATCACACACTGTGTAACCTGCAAGAGAAA CCATGGCTGCTTCTTCCTTGTTTCGCTGCATTCGTAGAGCTTCCTCTGTTCTCAGATTCTCGTATGCTGCATCGTTTTCC GTGTCTCCCAGGTTTTTTTTTTCTCTCTTCCTTCACACTGCAATATTATTTGTTTTTATTGAAAGTTGAAGGGTTTTTCT TGTGTTGTGTTGTGTTGTGTGTGTGTGTGTGTGCTAGTAGGTTAGTTGGGAGGACTCAAATGTCTATGTGTTCTTCATTG AGACATTGCTTTGAGGATCGAGGTTGTTCTTGGTGGGGTGTTAGAAATTTGAGTCATGGCACGATTAATCTTGTGATAAG TGGGGGGAAGACCAAGTTTGAGGCTGAGGAGGTTGAGTCTCCGAAGAAAGATAAGTATACGACGAAGAAGAGGCTGAAGA TGCAGAGGAAGAGAGAGAAGGAGAAGAGGAAAGCTGCTAATAGGAGAGATCCTCGCCGGCTTGGTGTTAAAGGGAAGAAG AAGAAGAAGTTTGATAGTCCAGAAGAGAGGATCAAGTGTAAGATTGAAAAGGTGAGCATTGTACTAGGATGCTGACCCTT TTACAGCATTTCTTCATTTGTTTAGCTCTACTTTGCTTATAAATGATTTGATTTCCAAGTTCTAGGCCATAGGGATGACT AGCACAAGGTTAATTGTTTTGCTCATATATTCTTGGGTAGTGGATCGTTAGAAAAATAGTACAGAACATATTCTCCCAGT TTAAGCTTTTGAGATACTATAGTTGGTTCATGACTGCTATTAGAACCTCTATGACCAAGTGGTTTACAGTTCAATCCTTT TTATCCCTTCATTCTAATAAAAAAAGGTTAAATTTCAACAAAAGATATGTGAGCATGTGATTTATCCACGCAATAGCCAA TTAGGCCTCTGGTGACTAATTGTACCATGGCTGCACAACACATTAAGGCTAATGGGCTCTTGCGTGAAAAGACATGTTAA GAATACAGGCTACACATAATTTTTGCTTGGGTTGACTTTTATTTAACTATGATATATGCCTCCAAGTCCAACAAAGGATA TCCCATTAGATTGAGAAATTTTCTACTGCTCTAAAAAAATATTATCATCTAGAATCAAGAACTATAATAAAAAAGATCTT GCAACAGATCATATTGTTTCTCAGTGTCTCTATTATGGTCAGAAATGCTTATTTTCCTAGACATTCTACCAAAATTTTAA TGGACTGACTCTCTGGTTTTAACCTCAGGCCAGAGTCAAGGAAGCCATGCTCATTGAAAGACTTAAACGATATGAAGTTC CTAAAGCTCAGGGTCCTGTTGCAAAACCAGATGGCTTGACAGGGGAGGAACGGTTTTATCTGAAGAAAATGGCTCAGAAA AGTTCTAATTATTTACAAGTTGGCAGAAGAGGATTATTTGGAGGGGTTATTCTCAATATGCATATGCATTGGAAGAAACA CGAGACTGTTAAGTGCATATGCAAGCCTTGTAAACCTGGTCAAGTACATGAGTATGCACAAGAACTTGCCAGACTGAGTG GTGGTATTCCGATTCACATTATTGGAGATGACACTATAATATTTTATCGCGGAAAGAACTATGTACAGCCTGATGTTATG TCACCAATAGATACATTATCCAAAAAGAAGGTGCGTTTCTGTGTATTTTCTATTTATCTTACACTCAATGTTAACTGTAG TTCTGTTCATAGTTTAAAAGCATTGGTAATGAAATTCAGTTTAATACTTTAATTTTTCCTCGATATTTTAACTGCAATCT CGATATTTTACCGATGGAATTGCACTAATATATTTGTTTCATCCGGTCAAAACTATGTTCTAATGACAAGCATTTGCACT TCCTTATTGATTCAGAGTTCAGACTATTTAGAAGTTGTTGAATGGTCAGACCATCCGATCATCCAATCGTTAAGACGTTT AGCTAGGCTAATCTTGTGTTTAAGCTCGTAGCATTTAGCCTATAGGATAAAGTTCTTTGCGCCATGCTTTTTTGTGCAAG AGTTGTTCATGCGATAGTGATCTCCAGTCTGCATTCTGAAGCTGTATCTTACTTGAATAGGTGTTTGGATGTCAATTGAT TGCAGTGTTAACAGACTTTCATCCCAATTCAAAAAAAAGTTCCATTCACTTTTTGTCTTGAAGAGCGTGCTATTGCTAAT GTATGTTTGTGCTAGTGCCAACAGATACCCAAACATAGCCTTAGCAGCTGGTTTAGTTGTTCAGTAAAAAATATAAATTT ATACACTATGCAAAATCTATATTTTATATTTATTTATTTATTTTTGCAATTTTACATGTACCTCTTTAACTAGGAGAAAG AATTTTGCAGTTTGGTGTGGATTGACAGTTTGTATAAAGATTGTATTCCCCTATTCCTTATTCCCATTGCACTTTTCTGG TTAAGTATCATTTATTTTAGGAGGGACCAGGTTTTAGATTAATAAATGCTATGTAAGCTTGTTCTTCGTTTATCTTTGAG ATTAGTGAAATAAATTTCTCTCTTTTTTTTTTCTTTTTCCTTTCAGGCACTGGAAAAATCCAAGTATGAGCAATCACTTG AGTCAGTGAGGCGCTTCATTGCTATTGCTGAGAAAGAATTAGAACTATATTACCGGCACGTTGCTCTTTATGGTGACCCA AACGACCGTAATCCGTTGTCAATGCTGGACAGTCGAAGCAAAAATTTTGGGCAAAAAGGGAACCATGGAATTCATGATGG AAGAAAGCTTGATTTGAGTAGTGATCATTTTTCAGCTAATCTTTCGGAGACAGAAGCAGATTCCTCGGAGATGGAGCTAT CAGGAACTGAAGATAATTCTGAAAATGAAGACTTGTCAATGAATGAATCAGATTCTGAAGAGGAAAGCATATCTTATTCT GATGATGAACAAGGAAGAGAGGTATATTTTACTAAAAGGCAAGGTGAAAGTATATGTTCGACCACAGGTTCATCTTCAAT GTCTGAACATAGCCACCGTTATAATAATCATCATTTATCATCCCGTTAAATTCCGACTAACTAGAAATTAGAGATTAATT GTACATTGTTAACAGTAAATGACCTTGAGTAAATCAAATAGTCCTTGGAGGAAATTGAAAAATAGTTTTTCTTTTCTTGT CGGTGTATATTTAGAAAATATGTAGGTTTCCACGGAAGGATAAGTGCTTCTGAAAGAAGCTTGATTGGAAGTAGTTTTTG TGAAGGCCTGAAGGGAGAAGTGACTCTAGTAATTTTGGTATCAAACATGCGAAAATTGAATTGAGTATATACCAAAACTA GAGCTCTCATTCCTAGCATTTTGGATCATTTTATCTTTTCTCAATCAATTATAGCGTTACAAGCTACTCACATAGGTTTC TCCCCATAATTGTTTCTTACTTTAAATATAATTGTAGAATGATTCCAAACATGCTCAGCATGGACTTCAATTTTATTGAT TCATCCAATGATGTGCTGGAGACCATGTGTGGTTATGTGTGTGCTTGAGAGGAGCATTCTCTTACGTCGTAGAGTATACT ATGGAACCCTAATCAAGATATTCTGATGTAACTTGGATGTATTAACAAAATTATCTGTTGAAAATCAAAC
CDS sequence (LotjaGi3g1v0498800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCATCGTTTTCCGTGTCTCCCAGGTTTTTTTTTTCTCTCTTCCTTCACACTGCAATATTATTTGTTTTTATTGAA AGTTGAAGGGTTTTTCTTGTGTTGTGTTGTGTTGTGTGTGTGTGTGTGTGCTAGTAGGTTAGTTGGGAGGACTCAAATGT CTATGTGTTCTTCATTGAGACATTGCTTTGAGGATCGAGGTTGTTCTTGGTGGGGTGTTAGAAATTTGAGTCATGGCACG ATTAATCTTGTGATAAGTGGGGGGAAGACCAAGTTTGAGGCTGAGGAGGTTGAGTCTCCGAAGAAAGATAAGTATACGAC GAAGAAGAGGCTGAAGATGCAGAGGAAGAGAGAGAAGGAGAAGAGGAAAGCTGCTAATAGGAGAGATCCTCGCCGGCTTG GTGTTAAAGGGAAGAAGAAGAAGAAGTTTGATAGTCCAGAAGAGAGGATCAAGTGTAAGATTGAAAAGGCCAGAGTCAAG GAAGCCATGCTCATTGAAAGACTTAAACGATATGAAGTTCCTAAAGCTCAGGGTCCTGTTGCAAAACCAGATGGCTTGAC AGGGGAGGAACGGTTTTATCTGAAGAAAATGGCTCAGAAAAGTTCTAATTATTTACAAGTTGGCAGAAGAGGATTATTTG GAGGGGTTATTCTCAATATGCATATGCATTGGAAGAAACACGAGACTGTTAAGTGCATATGCAAGCCTTGTAAACCTGGT CAAGTACATGAGTATGCACAAGAACTTGCCAGACTGAGTGGTGGTATTCCGATTCACATTATTGGAGATGACACTATAAT ATTTTATCGCGGAAAGAACTATGTACAGCCTGATGTTATGTCACCAATAGATACATTATCCAAAAAGAAGGCACTGGAAA AATCCAAGTATGAGCAATCACTTGAGTCAGTGAGGCGCTTCATTGCTATTGCTGAGAAAGAATTAGAACTATATTACCGG CACGTTGCTCTTTATGGTGACCCAAACGACCGTAATCCGTTGTCAATGCTGGACAGTCGAAGCAAAAATTTTGGGCAAAA AGGGAACCATGGAATTCATGATGGAAGAAAGCTTGATTTGAGTAGTGATCATTTTTCAGCTAATCTTTCGGAGACAGAAG CAGATTCCTCGGAGATGGAGCTATCAGGAACTGAAGATAATTCTGAAAATGAAGACTTGTCAATGAATGAATCAGATTCT GAAGAGGAAAGCATATCTTATTCTGATGATGAACAAGGAAGAGAGGTATATTTTACTAAAAGGCAAGGTGAAAGTATATG TTCGACCACAGGTTCATCTTCAATGTCTGAACATAGCCACCGTTATAATAATCATCATTTATCATCCCGTTAA
Protein sequence (LotjaGi3g1v0498800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHRFPCLPGFFFLSSFTLQYYLFLLKVEGFFLCCVVLCVCVCASRLVGRTQMSMCSSLRHCFEDRGCSWWGVRNLSHGT INLVISGGKTKFEAEEVESPKKDKYTTKKRLKMQRKREKEKRKAANRRDPRRLGVKGKKKKKFDSPEERIKCKIEKARVK EAMLIERLKRYEVPKAQGPVAKPDGLTGEERFYLKKMAQKSSNYLQVGRRGLFGGVILNMHMHWKKHETVKCICKPCKPG QVHEYAQELARLSGGIPIHIIGDDTIIFYRGKNYVQPDVMSPIDTLSKKKALEKSKYEQSLESVRRFIAIAEKELELYYR HVALYGDPNDRNPLSMLDSRSKNFGQKGNHGIHDGRKLDLSSDHFSANLSETEADSSEMELSGTEDNSENEDLSMNESDS EEESISYSDDEQGREVYFTKRQGESICSTTGSSSMSEHSHRYNNHHLSSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 24 | 18 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 25 | 29 | 5 | - | – | |
| Phobius | 30 | 49 | 20 | - | – | |
| Phobius | 50 | 450 | 401 | - | – | |
| PANTHER | 53 | 409 | 357 | 1.2E-179 | – | |
| PANTHER | 53 | 409 | 357 | 1.2E-179 | ||
| MobiDBLite | 99 | 144 | 46 | - | – | |
| MobiDBLite | 106 | 122 | 17 | - | – | |
| Coils | 108 | 128 | 21 | - | – | |
| ProSiteProfiles | 184 | 281 | 98 | 18.775 | ||
| Gene3D | 185 | 289 | 105 | 1.5E-9 | ||
| SUPERFAMILY | 186 | 279 | 94 | 4.45E-23 | ||
| SMART | 186 | 270 | 85 | 1.1E-25 | ||
| Pfam | 186 | 270 | 85 | 3.3E-18 | ||
| MobiDBLite | 330 | 450 | 121 | - | – | |
| MobiDBLite | 347 | 361 | 15 | - | – | |
| MobiDBLite | 363 | 377 | 15 | - | – | |
| MobiDBLite | 378 | 406 | 29 | - | – | |
| MobiDBLite | 422 | 438 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0498800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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