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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0499300 |
| Transcript ID | LotjaGi3g1v0499300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|A0A0L9UTZ7|A0A0L9UTZ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0499300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91769135..91775058) extracted from Lotus japonicus Gifu genome v1.2.
TAGTGTTTTTTACTTTGGTCAATGGATATTGGTTACCACTTACCATAATAGTAGCACAGGCCCAAAGGACACAGACAAAG TAACAACGGTGAAGATGACCGACCTACTGAGATTGTCGTTGCCGCCGAAATCAAAACCCAATGAAGCTCCTCCGCGTTTC CGCCACCCTCAAAACCCTTCGCCGCCACATGCTCCGCGGCTTCGCCGCCGCTGGGAACATAGAATCAGTATCGGAGCCCA TCACGATGATAGCAGCGAAGAAGGGTTTGCAGCCAAATTTGGTTTCGATGAATGCGGTTATTCAGGGTTTGTGCGTGGAA AGGAGGAAAGAAGAAGCTGAGGCGGTGTTTGAGGAGATGAAACGGAAGGGTTTGGCACCTGATGAGAAGACTTACTCGTC TCTCTTTCATTTGTTCTGCGACTGGGGTTTTTATGCGTCCTATTGGAGTGAGAAAGCTGATAAGGTTTTGAGTGAAATGA TTGATAGCGGGTTTTCACCCTCGGTTGTTGAATACAACAAGCTTATTCATTCATACTGCAGTTGGGGTTGGGAAGAGGGG GTTGAGAAGGCTGTGGAGATTTTGAGAAGCATGCCTGAGAGGGGTTTGTCCCCTGATGCTGAAAGTTATAGCAATGTTAT TTCTAAGTTTGGCCAAATTTGGGAGCTGGAGAAGGCATTTGAAATCAAGAAGGAGATGGTTGACAAGGGCTTCTTGCCTT GTGTATCATTTCGAGGCTTATAGACCGCCTGTGCTGGATCCCGCAGGCGCAGCCAAGACTGTTAGAAGCTTTTGATCTCT TCCGAGAGATGCTGCGAAGGGGTGTGTTGCCAAAGGAGTATACTTATTATAATTTGATGTATGCTTATTGTGAAAAAGGT GAATTCAGTAAGGCTTTTCATATGCATGAGGAAATGATACACAAGGGTTTTTTGCCTGATTTTTTTACTAGATTTTCACC GTCTCTTGTTACTTGCAATGCGCTTATTCATGGACTTAGCTTTTTCGGGAGGGCTGAGGAGGCTCTGGAGATTTTGAGGG GCATGCCTGAGATGGGTTTGTTCCCTGATACTGTTAGTTATACTGCCGTTGTATCTGGGTTTTGCCAAATCGGAGAGCTA AGGAAGGCGTATGATTTGAAGATGGAGATGGATGAAATGCTGACGAGTGATACGTCGGATGTCCGGCCCCTGTCTGGAGA CGTGTTACGTTCACTTATTACCGAAGAAGGCGACCTGTTGGATGAGGTTAATTATACTAGTGTGATAAATGCTTATTGTG CTGATGGTGAAGTGGTTAAGGCTGAGAAATTGCTTGATGAATTGACACACTATGATGTGCGACGGTGTGTTATCTATGAT GTGTTTGTTAATGGACTTGATAAGAAAGCTAGGACAAAAGAAGCTAAGGAGATGCTCCTGGGCTGGGTTTTTTATATGTG GTGGAGTACTTGGCCAACTTTAACATTTGATACTCTGATAGAGAACTGCAGTAATAATGAATTTAAGAGTTTGGTAGAGC TTGTCAAAGGTCTACGGACGAGGGATTTAGAGAATGCGGCAGCCAGTGTTATGAACACAGTGTTTCAGTGGAATTATAAG CCAGATGGAGCAGTTTATAATTTCTTAATTGTTGAACATTGTAGATGTAAAAATGTTGATAAGGCGTATAATATGTACAC GGAGATGGTGCATTATGGTATTGCTCCTCATATGTTCTCTGTACTTGCTCTTATCCATGTTCTATATTGTGATGATAGGT ACAATGAGATGAGCTGGGTAATTCAAAACACATTGAGGAGCAGTAACCTCAATGATTCTGAGCTACATAAACTACTTAAT GAAATTGGCATCAGTAAAGGTAAATTTAAAGAAGATGCTCTTTTCAATGTGCTAGCTGAAATAGCCATGGATGGCCTGTT ACTTAATGGTGGAAAGTGTTCATATGCTCCAACAAGAGCCTAATATCTTAAGTTTTGCTTGTTGAACTCTGTTACCATAA CCTTTAAGTAGAAATTGATTTCTTTGTGTTTTTTAAATCTAAAGGTCTTTCTTACAGTTGCTAATTTACTTTCAGGTTCT TGGGAATCATGTTTTATAGTGCTATGATTGATTATAGAATATTTTGTTAAATTTGCGTGTACAGTTGGTCGTGTTATATA GCAGTACTTATAAACAAAGTAATGAAATTATGTCATAGGAGCACAAATTAAATATTCCATGCCTTCGTAGTCCAAATTTC CATGAAAAGCCAAAACCTTCAATAAAAAACCTGTCCTGACATGGGTGATGAAGAAAAAATCATTCTATACCCATTTGCAT ACGTCTATAACAACTACACCGCTGGATGGATGATGGTTACCGTGCAGTATGGTAGATAGTGGGTTTTTTACTTTTTTCCA GTACATAAGCAGGTCTACTTCAAGGGTTGCTCCAGGTCAATTTTATGGGACGAGGCTGATGTGATCAAGGTCAGTAATGT GGAGCTTGAGTTCCTAACCGGGAGTGACAAAATTGATGATGCCTCTGCTCTCTCCCTGTGGCATCCCAATTTGAAGTTGC TCCTGGTAACTCTTGGTGAAAATGGCTCCAGATACTATACCAAGGTAAAAACCATTGCATCAATCAACTTCTGATAGTAA AAATTACTTGCTACTTATGCTAATCAACTTTGTTGTTTAGTTTTATTAATTTCGTCATGTGAGTGTATGACATTTATTTA TATATTACCTAAATTAAAATGATGTGTTCTAGATAGTGTGTTAGATGGTGATTTAGGCTACCCACATTCACTTCAACACA ATTTCTTTTCAATACTTTCTATTTCATGGGGTGAAATTCAAGTGTCCCAGCAAATTGAAAGTGGTACTCATAGAAATTAG TGTCCCTCACGTGAATTTCAATCAGTAAAAAAGTGTTAAAATGTGTTATTACTTGTTTCATTTTGCGATAATTTTTCTCC TTTTCTGCTCAAACCAGAATTTCCATGGATCAGTGGAGGGTTTCAGTGTCAAAACCGTTGATACAACTGGTGCTGGTGAT TCCTTTGTTGGTGCTCTGTTGTGCAAGATTGTTGATGATCAATCCATATTTGAAGTGAGTGCTTAATTAACCACTTAATC ACATTCCCTCGTTTTCCATATTTTATTAGTGATTGATTTGCTTTATCTTGTTTGACATTGCCGGATGAACCGAGATTAAG GGAAGTGCTTAAGTTTGCAAATGCTTGTGGAGCAATTACAACCACTAAATAATGTGCAATTCCAGCTCTTCCCACACAGG CTGATGCTCTCAACCCGAGCAACGATGCATAGAAATTTAGTGCTAGTATAGATTAGATGAGAACAATTAGTTATTATGAT AGTTGGTAACATTTTTACTAGATGTTAATGTGATGATACCAATCTTCATCACTTGGTTTTGACTTGCTAAGTTGTTATCT TTTTCAGTTTTTTGCTCTCTTTCTGCATTTTTGTTCAGTTGCCAATGTTGTTTCTCTTACAAGTTTTATTTTTGGTCAAT TTCTTCCAAGTTTTGAGAAAGTGTTTGAATAAAATTTTGAGTCCTGATCCGCATTTTTTTAATCGTTTAATCCTTTGTTT AATTTGGAGTAAATAGTCAAGTAAGTTCTTAGAAAGATTTAACCTCATATAATTAAAATCATTCTTACTATCACCGTCAA CTTAGCCCTTGTGTATAGGTTTTTGCAATTGCATCTTTTTCTCTTATATTTTCATTTTATCATTTAATTAGTTTCTTTTG ATCCATTCCCCTACTTCTCCTTTTCTTTTCTTTTTTTCTGCTCAAACTATAATTTTGATGGATCAGTGGAGGCTTTCCAT GTAACACAGTTAAGGCGGAACATGAGAACTTTTCACATTAATTCTAGCTCATGTATTTTTTTTAATCACATTTGATCATT CATCTTCCACCTCCATCTCCTTCCCCCTTTTTTCTCTTGCTCCATAGTTCAAACCAAATGAAGATGCGAAAAAAGTTTCA TGAAATGTGTATAGTGCCAACACTTAGGTGACACTTAGCTTTTGTGGTTAAAAGTCATCCAATTTGCATACCTAATCCAA TTTACATACAAAATAAAAAGCATATGTTCTATTTTATCATAGTTGTTGAGGCAAAAGACTCTCAGACTCGGTCTTGAGCA ATTGCAGAACCACACATAAAGAGAGGAAAAACGAGAGAGATGGAAAAATAGGGAAAACTGTATATTCTATATTCATATTG AATGTTTTTTTTTATAAGCATATTCATATTGAATGTAATCAGTGTTATATACAGACACTAATCAAAAGCTGACTTGGCAT ATAGCTGACCTGGCATATAGCCACAACAACACGAAACAGACTCTTAACAAACTAAACAAATCACAACAAGTAGTTGTTAT CACCCTAAACATGATTACTCTCAACACACCCCCCTTAAACAGTTTACATCAGAAACACTTCATCCCAAGTCTGTTTCTCA GCTTTTCAAAACTTTCCCTCTTCAAAGCCTTTGTAAGCACGTCTGCCACTTGCTCTTCGGACCTACAGATTTCGAGCCTC AGCTTATTCTTGCTCACCTGGTCCCTCAGAAAGTGAAACCTGGTTTTGATATGCTTGCTCCTTCCGTGAGCAACATGATT CTTGGCAAGATTAATGGCAGACTTGTTATCAACATACATCACAATAGGTCCTGCAGAATCCACTTTCAGATCATCAAGCA AAGTTTGCAACTAGAGAGCTTGACAACTCCCCGACAACTTCATTTTTTTTTAAATAGTTTAAAACTTGTTTAATTAGGAT TAAATATTCTTAAATTATTTAACCTCATATAGTATTGAAAGTATACTTTATTGCAATTGCATCTATTTAATATTTTTCCT TTTATCATTCAATTGGTTTGTTTTAAATTCAAATCGATCGATGTGGACCAGGTTCTGAGAAGGGCGATGATAATGCGGGC TCCTCCAGCGGTGGCTTCGGCTGGTCAGCGTGCATCGAGGGAGATGCCCTCAGTTTAGAAGCGTCATGGAGGAAAATAAT GATTACATGTTCTCTGGATACGGGTATGATTCACTTTTTACCGAAGAAGGCGGCCTGTTGAATGAGGTTAACTATACTAG TGTGATAAATGCTTATTGTGCTGATGGTGAACTGGTTAAAGCTGATAAATTGCTTGATGAATTGACAAACTTTGGTGATG TGCAAGAGCCTGTTATCTATGGTGTGTTTATTAATGGACTTGATAAGAAAGCTAGGACAAGAGAAGCTAAGGAGATGCTT CTGAGCTTGGTTTATCATAACTGTAGGGATCCTTGGTCAACTTTAATATTTGTTACTCTGATAGAGAACTGCACTAATAA TGAATTTATGAGTTTGGTAGAGCTTGTCAAAGGTTTCCAGAAGAGGGATTTAGTGAATGAAGCAGCCAGTGTTTTAAACA CAATGCTTCAGGGGAATTATAAGCCAGATGGAGCAGTTTATAATTTATTAATTGTTGAACATTGTAGTCTTCGTAATGTT GATAAGGCGTATAATATGTACATGGAGATGGTTCATTATGGTTTTGCTCCTCATATGTTCTCTGTACTTGCTCTTATTAA GACTCTATATTATGATGAAAGGTTCAATGAGATGAGTTGGGTAATTGAAAATACATTGAGGAGCTGTAATCTCAATGATT CTGAGCTACATCAAGTACTTAATGAAATTGGTGTCAGGAAAGGTAAATTTAAAGTAGATGCTCTTTTGAATGTGCTAGCT GAAATGGCCATGGATGGAAAGTGTTCATATGCTCCAGCAAATGCCTAATATCTTTGGTTTTGCTTGTTGAACTCTGTTAC CATAAACTTTAAGTAGAAATTGTTTTTTTTTTCTTTTCTGTTTTTTAAAATCAAAAGTTCTTACAGTTGATAATTTACTT TCAG
CDS sequence (LotjaGi3g1v0499300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCGAAGGGGTGTGTTGCCAAAGGAGTATACTTATTATAATTTGATGTATGCTTATTGTGAAAAAGGTGAATTCAG TAAGGCTTTTCATATGCATGAGGAAATGATACACAAGGGTTTTTTGCCTGATTTTTTTACTAGATTTTCACCGTCTCTTG TTACTTGCAATGCGCTTATTCATGGACTTAGCTTTTTCGGGAGGGCTGAGGAGGCTCTGGAGATTTTGAGGGGCATGCCT GAGATGGGTTTGTTCCCTGATACTGTTAGTTATACTGCCGTTGTATCTGGGTTTTGCCAAATCGGAGAGCTAAGGAAGGC GTATGATTTGAAGATGGAGATGGATGAAATGCTGACGAGTGATACGTCGGATGTCCGGCCCCTGTCTGGAGACGTGTTAC GTTCACTTATTACCGAAGAAGGCGACCTGTTGGATGAGGTTAATTATACTAGTGTGATAAATGCTTATTGTGCTGATGGT GAAGTGGTTAAGGCTGAGAAATTGCTTGATGAATTGACACACTATGATGTGCGACGGTGTGTTATCTATGATGTGTTTGT TAATGGACTTGATAAGAAAGCTAGGACAAAAGAAGCTAAGGAGATGCTCCTGGGCTGGGTTTTTTATATGTGGTGGAGTA CTTGGCCAACTTTAACATTTGATACTCTGATAGAGAACTGCAGTAATAATGAATTTAAGAGTTTGGTAGAGCTTGTCAAA GGTCTACGGACGAGGGATTTAGAGAATGCGGCAGCCAGTGTTATGAACACAGTGTTTCAGTGGAATTATAAGCCAGATGG AGCAGTTTATAATTTCTTAATTGTTGAACATTGTAGATGTAAAAATGTTGATAAGGCGTATAATATGTACACGGAGATGG TGCATTATGGTATTGCTCCTCATATGTTCTCTGTACTTGCTCTTATCCATGTTCTATATTGTGATGATAGGTACAATGAG ATGAGCTGGGTAATTCAAAACACATTGAGGAGCAGTAACCTCAATGATTCTGAGCTACATAAACTACTTAATGAAATTGG CATCAGTAAAGGTAAATTTAAAGAAGATGCTCTTTTCAATGTGCTAGCTGAAATAGCCATGGATGGCCTGTTACTTAATG GTGGAAAGTGTTCATATGCTCCAACAAGAGCCTAA
Protein sequence (LotjaGi3g1v0499300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRRGVLPKEYTYYNLMYAYCEKGEFSKAFHMHEEMIHKGFLPDFFTRFSPSLVTCNALIHGLSFFGRAEEALEILRGMP EMGLFPDTVSYTAVVSGFCQIGELRKAYDLKMEMDEMLTSDTSDVRPLSGDVLRSLITEEGDLLDEVNYTSVINAYCADG EVVKAEKLLDELTHYDVRRCVIYDVFVNGLDKKARTKEAKEMLLGWVFYMWWSTWPTLTFDTLIENCSNNEFKSLVELVK GLRTRDLENAAASVMNTVFQWNYKPDGAVYNFLIVEHCRCKNVDKAYNMYTEMVHYGIAPHMFSVLALIHVLYCDDRYNE MSWVIQNTLRSSNLNDSELHKLLNEIGISKGKFKEDALFNVLAEIAMDGLLLNGGKCSYAPTRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 47 | 47 | 2.8E-8 | ||
| ProSiteProfiles | 9 | 43 | 35 | 11.488 | ||
| Pfam | 11 | 41 | 31 | 7.4E-5 | ||
| TIGRFAM | 11 | 44 | 34 | 5.4E-8 | ||
| Gene3D | 48 | 127 | 80 | 1.0E-16 | ||
| PANTHER | 50 | 114 | 65 | 7.3E-36 | – | |
| PANTHER | 50 | 114 | 65 | 7.3E-36 | – | |
| Pfam | 51 | 100 | 50 | 5.6E-11 | ||
| ProSiteProfiles | 52 | 86 | 35 | 11.148 | ||
| TIGRFAM | 54 | 88 | 35 | 4.6E-5 | ||
| ProSiteProfiles | 87 | 117 | 31 | 9.208 | ||
| TIGRFAM | 89 | 116 | 28 | 7.0E-4 | ||
| Gene3D | 131 | 206 | 76 | 7.1E-7 | ||
| ProSiteProfiles | 145 | 179 | 35 | 9.646 | ||
| Pfam | 145 | 171 | 27 | 1.3E-6 | ||
| TIGRFAM | 149 | 173 | 25 | 9.4E-5 | ||
| Gene3D | 213 | 358 | 146 | 2.7E-9 | ||
| PANTHER | 220 | 321 | 102 | 7.3E-36 | – | |
| PANTHER | 220 | 321 | 102 | 7.3E-36 | – | |
| ProSiteProfiles | 266 | 300 | 35 | 10.731 | ||
| Pfam | 269 | 298 | 30 | 0.0047 | ||
| TIGRFAM | 269 | 300 | 32 | 1.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0499300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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