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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0501600 |
| Transcript ID | LotjaGi3g1v0501600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chitinase; TAIR: AT3G54420.1 homolog of carrot EP3-3 chitinase; Swiss-Prot: sp|P27054|CHI4_PHAVU Endochitinase PR4; TrEMBL-Plants: tr|I3SA35|I3SA35_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0501600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91998413..92004929) extracted from Lotus japonicus Gifu genome v1.2.
GATTCTTTCATCATGCCACTTCATTCACATGTAGAAGTCATGAACAGGACATTTCCATTAAATGGCCAAAAACCACCAAA CGTCCAAACCTATGCAACCTCATTGCCCCAAACCAAAGTCATAAGTCAAAATATCCAGCCCGTGCCAACGCTTTCTGGAA GCGAATACAATTCTTCTCACCTTTGCATCTTCAGACAGAAATGTCATCAACAACTTTAATTAACATGGTACGTCATACGT GTAACGTACAGCCAGCACTTCATAAAATTCAAAGTCCTACCTAGCAAGCACTAGCACAATAAATATACCTCCCTTTGTGC TAACTCTACCTCCTTCATCAAACACTTTCAATTTCTCTTACATACATAGCATTAAGCTACAACCTAGTGATTTATATTGT TCCTAACATTGGATGAGCATGGGGAATAAGTTACTGAACATTCATGCTCCACGATTTGCGGTAGCCTTTGTCATGATGAT GATGATGGTTCCCAAATTTGTGAGAGCCCAAAGTTCAGTAGCTGACATAGTCACACCAGAGTTCTTCAATGGCATAATTG ATCAGGCTGATGCTAGTTGTGCAGGGAAGAATTTCTACTCACGAGATGCTTTCCTCAATGCTCTCAATTCCTACAACCAA TTCGGTAGCCTTGACTCTTTGGATGATTCTAAGCGTGAGATTGCAGCTGCTTTTGCCCACTTCACCCATGAAACAGGACG TTAGTATTCCTTCTATTTCTCTTCTAAATATATACTAACACTTGAACTATATCTTCTCGAGTGACATAACCCCTGCAGAG AAATCTTGGTCATACAAAATATTTTTCTTAACATCTTTTACACGCACAAATATTTACCCAATAGTCATGAATTTGTAAAC TACCATGATTTTTTTTTTGGGCTTATACTATGATTAATGAATGATTAATTGATACAATACACATTGCCACATGGATGCAG ATTTTTGCTACATAGAAGAGATTGATGGCGCATCAAAGGACTATTGTGACGAAACCAACACTGAATACCCTTGTGCACCT AACAAAGGCTATTATGGGCGTGGACCAATCCAACTATCATGGAACTTCAATTATGGACCAGCAGGGAAGAGCAACGATTT CGATGGATTGAATGCTCCAGAGACAGTGGCCAATGACCCTGTTGTGTCCTTCAAGACAGCACTGTGGTACTGGATGCAAT TTGTGCGCCCTGTCTTGAGCCAAGGGTTTGGTGCAACCATTAGAGCTATCAATGGCCAACTTGAATGTGATGGTGCGAAC TCCAACACAGTTCAAGCTCGAGTTAATTACTATACCCAATATTGTTCACAACTCGGTGTTGCTCCTGGGGATAATCTTAC TTGCTAAATAATTAGGTGCCTCTAGTACTATTCATATACATTTTATATGAATTTGTTATGGTACAGCATATCAATAAATT AAGAATACACAGGTTCTGTTATTGTACTAGAACATGAATAAAGAGTTTAAGCCTTGCTGCCTCAAATTTTTTTTCATCCT TGTTATTGTTGCTAATAGTGATATATCAGATTTCCCGGGAGAGGAAATATTGTATTACCAACAAGTCTCAGCACACTTGG GACTTCTGAATTCTGATCGTAAGTATATCACAATAACATTGTCACTATAAGTTAATTTAATGAAACAACAGCTACAGAAG ATTGCAGCTAATGTGTTCATTTTTCAGTCCAAATTTGGCCACTAGTCAAACAATACTATCATGATTGGCCTTTAGCTGTA CAATGTTGATATGTGAAATAAAACTAAACTCAAGCATAGAATATAGAGAGACAATAGGGATTTCATGCTTCAAAACTCCT TGGCTCTTTGCCTCAATCGATCAAGTTCCATCTCAATCTCAGAATCTCGAAATGGTATTCCAGTGTTGCTAGAGGTAGCA CTTCTCCCAGGAGGAAGTTCTCCTTTCTGCTTGAAGCAAACAGTCAAATAATGAAACAGTAAAATGATGTGTAGCATATT GGTAGTTCTATGACAATTCCTCTACATCAAATTTAGTTTCTTTAGCATGATATAATGCTTTGGAAACAACTTTGCATGGA AGTTACTTCAAAAATTCTAACTTCTTATCATTCAGAGATACAGACTATTTGCCATTTGAAGCATACCTTCGAGCTACCGG ATAATTCTTTCTTCAAATTTGCAAGATCATCATCAACAGATGAGCTCTCAAGCAATGCAAACTGCAAAAATCAATAATTC TCACCAAATTACCATACAAAACTGCAAGAAATGAAGGGTGCAGGAGAAAGAAATCCAAGAATTTAACAATTACTTACGTA ATAAATGAGTAAGTTTAACAGCTTATACAACACCAATTCACCGACTGCATGGTAAAATTAATGGATGATGTAGCCCTAGA TAAGAATGAGGCTAAAAGAACCCATTCCACCTAGGATTCATGTGGTGTATCCCAATATAAATTTGGACATTAGACTTGTT CTTATAGTTTTCTGGTTGAGTCATTCAAATAATTTCCAAAAAGAAAAGATTTACGGAAAAAAATCGCTACATAACTGGAA CTCGGTCTTTACATAACTCCTGAGAAAATGGTTTCTATATTTTTCAACAGCAAGTGAAACAAAAAAAGAAAAATGCATTG CTGTGGAATAGAAACCGAAGAGGCAAACTGCCGAGCATAGTGAATGTAGCTATGAAAATAATATAAAGATTTCCATTTCA ATCATTTTAAATATCATCATTTCTTTGGATAAAATATGATTGGGTTTGGTTCCTTTGATCCCATTTCCCATAATAATAAA TTAAAATAAAATAAACCTAGGTTTTCTTCTTTTTCATTTGTATTCTTTCATTTTAAAAATCACATACAATTCATACATAT AAACTCAAAGTTAGATGGTACATAAACAACCCCTACCTTCCCGTCAAGATCATCGGTTGTCAACTGGCCCAGAGCTTCAG CTTGGGACTCCATTGTCATCACTATCAAGATAACATGAAATAATTAGAAAGAAAAGGAGATTTCAACTACAATTACACTG ATTAGGATAATTAAGAATGAGGACACATATTGTCAAAATGCCCATATATCAAAGAGTTCAGGTTCAGATTAAATCATAAT ATCTTGATATTATGTGATACAGTCCTCATCAGATTATTGAAATACATTCAAGTAACAGATTTTGAACCAAAAGAAACTTC AAGATGTTATATTTTCTCCCAGATTTCACAGTTAATTCATAAATAGGCTTTCAGATTGCAAAAAGGAAAAAAAAAAGGAA GCAGGTAGGAAGGATAGAACCTCAAATATATCTTTGGCATGACAACTTTAGTGTCGTTTAAAAAAAACAAAAACAAAAAA CAAACTTTAGTGTATCTTTGTACATGGTAAAGGGGCAAACATCAAGTGTAATCTAGGTTATAAGTATTATTTATGTATCC AAGAAGCCCAATAATTGACACAGTGAACTTTCTCACCTTTCTCTTCCATCTTTTCAAAAGCTGAAAGGGCACTACTTGTA TTGACATTTCCCAGCATCTCACTCACCTTAGTTGCAGTCCTAAAGTAACAACCAACAGACATTACTAACAGAGCCAAAGA ATATAGAATGAAATACAATGGAAGCCAATTGTAGAAGGTTTGAAAGACAAACTTTGCAGATTGAGCTCTTGCTTTCAAAG TATCCTTCTTCGACCTTGCCTCCGAAATCTTACTCTCCAACAGCTACAAATAACTATGCGGTAAATAACTATGCATTGCA TATAAATAAAATGCCTGCTAGCAATAAAATGGTTCAACCAATTCCAGTCATCTCTAGAAGGATACACTTTTTACAAAAGA GTCAAAAGAGGGAACTATGTCTTCCCATATCAATTTTAAACTGCATCGTCCCCATCAGCCATAAATTAGCTTTGGCTAAT CTCTTTTTTCCATTTCCTTTTTCCTGACATCCTACTCTTGAGAAACTTGGACGTCAATAAAATCAATCATCAATCATACA CCTATATAATATAGACTCAAGCTAAGCATAGCTCATTAGCAGGGGCAGTGAAAATTAGAAAAACATGCCTTAGTGAAAAT ATAAAATGAATGCATTAGGGAAAAAATAAAATGAACTTAAATAACAGCTTACAAATTCTAAGAACAAGACATATTACTAT GACCTAGTAAAGTTCAAGGAATATACACCCAACACATAGACGAGGGTTAAAACTACTCCAAAATGCATAGCTCAATTGGT CATTAGACTTAGGCTTTCTTGATGCTAGTGCTAGCTAGTCCTATGTCATGATGTCACTCCATGAAAAGAGTCAGCTCAGT TATTCCTCCCAGTGCTTCAAAAACATTCTGTTTTCATTTCCTAACACATAACATTTCATTGTTTTGTTTTAAGATACTGA GAAAGAAAAAGCTTTAGCTTACCCGTGTATTAGAGACAAGATTCTCAACAACGCCCTTTTGTTGATCAAGTTGAGCTTTC AACGAACTTGCATTGTCCTGCAACATTTTAAAGCATATAATGAGCTTTCCATAATGTGATACCCATTATAAGGAACTATT TTGAAGTTGCAATTTTCTGAATCATGAAATAAAATGACAATCTAGCAAATTCCAAATATTTTAATCAACATTGTCATTGG CATTCACATCTATAGCATCATCTGACATAAGTTGATGCGAATACATCAAAATAATTTACAGAAGTCAGCTACTGTCAGGT CTGTCATTATCTAAAAAGTCAGAGCTGAGCTGATCACAACACAATATGAAACAGGGACATGACAATCTGAAAGGTTATCT CATTTCAATATAAAAAAAAAGGTTATCTCATTTTATTGCCCTAAATATCTGTTTTTGAGGTTAAATAATTTATGAACATG GGCAAGAGTTCCCATCAAGCATTTACAGATGCATGTAGGAATGGGAACCATAGCAAATGCAAATATTAAGCAATAACAGG ATGATAAAGTAACGATAACAAGTCAAAATCAACAAGTTTATTTGATTGATGTTCACACCACAAAAATAAACAATCCACTT TAAAACCTAAAATAGAAACATAGGATAAAGTTATCACAAAAGTCATTAACAAAATGAGCACGTACTGCAAAAGATTTACG CCTCTTAAGTGCTTCACGAGCAAGATCTTCCTCACCTTTCTGAAGAGCAAGTTGTGCTTTACGGTACCTACATCAAATGT AAAGCACAAAAGTGGTATTGATACAACAAACATTGCAAGCAAATTAAGATAATAACTATATCATACATTACCACTCTTCA GAAGCTTGTTGTGCAGCCTTGTACTTATTTTCCATCCGCTTTTGAGATGCCAATACCTCAAGAAAGGGGACAAGAAAAAA AACGAATTTTTAATGAAAATAAAGTGAAGACATGAGTAATATGGCATACATAGGGGAAAACTAACAGACTTTTTGTTTTC AGCATTTAACCCCGTATGGAAGAGCTTATTTGAGCTTATCTTAGAGCATAAGCACTTATGCAAGTGTTTAGGAGAGCTTA CATCAATACCTATTGAATTTTTTTAGCTTATTTTCATAAGATGCTTAATTTAGCTTATGAATAAAAGCTTATGCTTATCT ACCAGCTATTTTCAACTTATTTCAATAAGCTTCTCAAATCAGCTTATGAATAAACGCTAGCTAGCGCTTAAGACCTGCTT AGTTAAGTTATTTTCCCAAACGCACCCTCAATCTATGACCGAGCAAAACAATTATGACAAATGAAAATCAAAGCAACAAC AGCATAAAAATCAAATTTAGAAGGAAAAAGTGTAACTAACTTGTGCTGTAGCTTGGCGCATTTTAGTCAAATCATCGTTC ATTTCAAGCACAGCTTGCTCCAAGATTTTCTCAGGGTCTTCAAAGGAACTTATGACAGCATTCGCGTATGACTGCATTAC TAAGATGACAAAATCTAACCATAACGACAACAATAATGAGAAAAATTAAAGCTAAAACAGTAAAACCCCACAAAACACAC ACTAAATCGTTTCTTTCTTCACCTTCACAACCCTAGCGAACCTATCGAAGAGGTTCATTCGAGCGCCTCCACGGCGAGGA GCTCGTACTGGCTTCACAACCCTCATCCCACTGAGCCTCAGAACTTCCACTGCGATGAACCAAACACCGCAATTCGCAAG AACGGTTAATTAGGTTAGAAATTAGGCGTTGATTGTGGTGGCGGTTAATTGAATCGATTGGTACCTGTTCCGGTGCCGAG GAAGGAGGTAGTGAGAGGCTTCTTGAGCATGCAGAGAGTGGAGGAGGGAGAGGGAGAAGAAGATTGGAATGGCGTGGAGG GTAATCCTGTAAATATTTGAAGCTTCGTCGACATTTTTGGTGTGTGATGATATTGATAGGAATGAATGAAGATGATGGAT ATGGTGGTGGTTTTGGGAACCACTCCTCAACCTCACTCCTTCTTCTCTCGCTCTCGTTGCTCGATTCGATGATGAGTATG AGTGGTTGATTGATGGTGGACTCTGTTTTCACTGGGC
CDS sequence (LotjaGi3g1v0501600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCATGGGGAATAAGTTACTGAACATTCATGCTCCACGATTTGCGGTAGCCTTTGTCATGATGATGATGATGGTTCC CAAATTTGTGAGAGCCCAAAGTTCAGTAGCTGACATAGTCACACCAGAGTTCTTCAATGGCATAATTGATCAGGCTGATG CTAGTTGTGCAGGGAAGAATTTCTACTCACGAGATGCTTTCCTCAATGCTCTCAATTCCTACAACCAATTCGGTAGCCTT GACTCTTTGGATGATTCTAAGCGTGAGATTGCAGCTGCTTTTGCCCACTTCACCCATGAAACAGGACATTTTTGCTACAT AGAAGAGATTGATGGCGCATCAAAGGACTATTGTGACGAAACCAACACTGAATACCCTTGTGCACCTAACAAAGGCTATT ATGGGCGTGGACCAATCCAACTATCATGGAACTTCAATTATGGACCAGCAGGGAAGAGCAACGATTTCGATGGATTGAAT GCTCCAGAGACAGTGGCCAATGACCCTGTTGTGTCCTTCAAGACAGCACTGTGGTACTGGATGCAATTTGTGCGCCCTGT CTTGAGCCAAGGGTTTGGTGCAACCATTAGAGCTATCAATGGCCAACTTGAATGTGATGGTGCGAACTCCAACACAGTTC AAGCTCGAGTTAATTACTATACCCAATATTGTTCACAACTCGGTGTTGCTCCTGGGGATAATCTTACTTGCTAA
Protein sequence (LotjaGi3g1v0501600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMGNKLLNIHAPRFAVAFVMMMMMVPKFVRAQSSVADIVTPEFFNGIIDQADASCAGKNFYSRDAFLNALNSYNQFGSL DSLDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDETNTEYPCAPNKGYYGRGPIQLSWNFNYGPAGKSNDFDGLN APETVANDPVVSFKTALWYWMQFVRPVLSQGFGATIRAINGQLECDGANSNTVQARVNYYTQYCSQLGVAPGDNLTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| PIRSF | 9 | 237 | 229 | 1.6E-86 | ||
| Phobius | 15 | 23 | 9 | - | – | |
| PANTHER | 15 | 237 | 223 | 6.3E-120 | – | |
| PANTHER | 15 | 237 | 223 | 6.3E-120 | – | |
| Phobius | 24 | 32 | 9 | - | – | |
| Phobius | 33 | 237 | 205 | - | – | |
| Gene3D | 34 | 110 | 77 | 1.4E-22 | – | |
| SUPERFAMILY | 35 | 237 | 203 | 9.84E-77 | ||
| Pfam | 39 | 182 | 144 | 3.7E-38 | ||
| CDD | 40 | 237 | 198 | 1.11489E-83 | – | |
| ProSitePatterns | 56 | 78 | 23 | - | ||
| Gene3D | 111 | 162 | 52 | 1.4E-26 | – | |
| Gene3D | 163 | 237 | 75 | 7.2E-25 | – | |
| ProSitePatterns | 171 | 181 | 11 | - | ||
| Pfam | 190 | 237 | 48 | 6.5E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chitinase activity | Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) polymers of chitin and chitodextrins. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Chitin catabolic process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. | ||
| Biological process | Cell wall macromolecule catabolic process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. |
Expression pattern of LotjaGi3g1v0501600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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