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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0504000 |
| Transcript ID | LotjaGi3g1v0504000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|V7C741|V7C741_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0504000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92215611..92217841) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGACTGATTAGGGTTCACGCGGTTAAGATAATGCTGTCAGAGTGTCTAGATCTTATTCAATTTTAGTTTTGAACGAA ACCCCAACCCAATGAAGTTCCTCCGTGCTTCATTCACCTTCACCCTCAAAACCCTTCGCCACCGCCACATGGTCCGAAAC GCCGTGTCGCCGCCGAATGTTACCACACACAACGTCATGATCCGCCGCGGCTTCTCTTACACGTCTCTGATTGATTTGAA TGATATGATTTATAGTGCCTCGGCTGGTACATTCAACCAGCTTGTTCATGAATATTGCGAAAACAAGGAGCTGGACAAGG CGATTCAAGTGAAGAAGGAGATGGTTCAGACTGACGGAAGCTTTTCATCTCTTCCGAGAGATGCTGTGGAGGGGTTTGTC GCCAGATGAGGGTACTTATTCTAGTTTGTTCAATGCTTATTTTAGTTTGATCAATGCTTATTGTCTTGGAGGTGAATTCA GTAAGGTTTCTAATTTGCATGATCAAATGATACACAATGGTGTTTTGCCTGATTTTGTTACCGGGTCGCCGTCTCTTGTT ACATACAATGCACTTATTTATGGCTATTGCTTTTTGGGTAGGGTTGAGGAGGCTTTGGGGATTTTGAGGGGCATGCCTGA GATGGGTTTGTCGCCTGATGCTGTTAGTTATAACATTGTTATATCCGGGTTTTGCCGAATTCGGGAGCCGGGTAAGGCTT ATGAATTGAAGATGGAGATGGATGAAAAGAGGATATTGAGGATGGAGGAAGTCGTGTATGAATCACTTATGCAAGGCCTG TCGGATGAGGATGCTTATTCTAGTTTGATGAATGATTATCTTGCTCAAGGTGACATGGAAAAGGCTTATATATTGGATCG TGAAATTGCACACGATGGTTATTTGTCAGAGTCTGTTACCGAAAGTGTGTTTATTAATGGACTTAGTAAGAAAGCTAGGA CAAGAGAAGCTAAGGAGATTCTTTTGTCGATGATTTCTAATTCGTGTTTGTCTAAGACAACTCATACAACATATGATGCT CTCATAGAGAACTGCAGTAATAATGAATTTAAGAGTCTGGTAGAGCTTGTCAAAGGTTTCCGGATGAGGGGTTTAGTGAG TGAAGCAGCCAGAGCTCATGACACTATGCTTCACGGGAATCATAAGCCAGATGGAGGAGTTTATAATTTCTTAATTGTTG AACATTGTAGATGTAAAAATGTTGATAAGGCGTATAATATGTACACACGGATGGTGCATTATGGTTTTGTTCCTCATATG TTCTCTGTACTTGCTCTTATTAAAGCTCTACATCGTGCTAGAAGGTACAATGAGATGACTTGGGTAATTCGAAACACGTT GATGAGCTGTAATCTCTATGATTCTGAGCTACTTAAAGTACTTAATGAAATTGATGTCTACACATGTCAAATTGAAGCTC TTTTGGATGTGCTAGCTGAAATAGCCATGGATGGCCTATTACTTAATGGTGGAAATTGTTCATATGCTTCAGCAATGATA GACCCTGGATTCAAATAAAGGCTGGTTTGAGTAGTTATTTGTGTAATAAGTCAGTTTTTCTAACTGATTTGGGTAGTTAT TTGTGTAATATTTCAGTTTTTGTAACTGACTTGTGTTGTTATTTGTGTAATAAGTCAGTTTTTGTATCTGACTTGGGTAT TTATTTATCTCTTTATAAGAGATTGTTGGCAGATATAGAATTATTCATGAAATTTGGATCAGTTTAGGGAGAGACTAGCC TCTCGAATGCTAGACTGTTTGTTAACCGTTACAGTTTTATTCAAAAGAGAATTATATTCTTCTCTTACCTTCTGTCTGAT CCAGTCTCTATATCACACAAGTACCTAATATCTTTGGTTTTGCTTGTTGAACTCTGTTACCATAAACCTTGAGCTGACTC TTCCAGCTTACATCTAGCATGCTTTGGCTTGGAGACTTGCAATATGGAAAGTTCTCCCTTGCTAGGAAAGCAATTTATCA TCTTTTACGTCCTGGAACTCTACAGGCCCGTTTGGGTGAGCATTGGGAGCACCAAACGTGCGTTCCCAACGCTGAAATCC CACAGCTCCAAGAGATTTCTTCCTGCAGAACGTGCGTTGAAGAGCACTCCCACCGCTGAGGCAAACAGGCACCACAGCTA TCAAAGACCTCCTTCTTAGATTTTTGTTTTTTGTTTTTTAAGTGTCAAGTATGAAGTAACTTGCTTTCAAT
CDS sequence (LotjaGi3g1v0504000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGTGGAGGGGTTTGTCGCCAGATGAGGGTACTTATTCTAGTTTGTTCAATGCTTATTTTAGTTTGATCAATGCTTA TTGTCTTGGAGGTGAATTCAGTAAGGTTTCTAATTTGCATGATCAAATGATACACAATGGTGTTTTGCCTGATTTTGTTA CCGGGTCGCCGTCTCTTGTTACATACAATGCACTTATTTATGGCTATTGCTTTTTGGGTAGGGTTGAGGAGGCTTTGGGG ATTTTGAGGGGCATGCCTGAGATGGGTTTGTCGCCTGATGCTGTTAGTTATAACATTGTTATATCCGGGTTTTGCCGAAT TCGGGAGCCGGGTAAGGCTTATGAATTGAAGATGGAGATGGATGAAAAGAGGATATTGAGGATGGAGGAAGTCGTGTATG AATCACTTATGCAAGGCCTGTCGGATGAGGATGCTTATTCTAGTTTGATGAATGATTATCTTGCTCAAGGTGACATGGAA AAGGCTTATATATTGGATCGTGAAATTGCACACGATGGTTATTTGTCAGAGTCTGTTACCGAAAGTGTGTTTATTAATGG ACTTAGTAAGAAAGCTAGGACAAGAGAAGCTAAGGAGATTCTTTTGTCGATGATTTCTAATTCGTGTTTGTCTAAGACAA CTCATACAACATATGATGCTCTCATAGAGAACTGCAGTAATAATGAATTTAAGAGTCTGGTAGAGCTTGTCAAAGGTTTC CGGATGAGGGGTTTAGTGAGTGAAGCAGCCAGAGCTCATGACACTATGCTTCACGGGAATCATAAGCCAGATGGAGGAGT TTATAATTTCTTAATTGTTGAACATTGTAGATGTAAAAATGTTGATAAGGCGTATAATATGTACACACGGATGGTGCATT ATGGTTTTGTTCCTCATATGTTCTCTGTACTTGCTCTTATTAAAGCTCTACATCGTGCTAGAAGGTACAATGAGATGACT TGGGTAATTCGAAACACGTTGATGAGCTGTAATCTCTATGATTCTGAGCTACTTAAAGTACTTAATGAAATTGATGTCTA CACATGTCAAATTGAAGCTCTTTTGGATGTGCTAGCTGAAATAGCCATGGATGGCCTATTACTTAATGGTGGAAATTGTT CATATGCTTCAGCAATGATAGACCCTGGATTCAAATAA
Protein sequence (LotjaGi3g1v0504000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLWRGLSPDEGTYSSLFNAYFSLINAYCLGGEFSKVSNLHDQMIHNGVLPDFVTGSPSLVTYNALIYGYCFLGRVEEALG ILRGMPEMGLSPDAVSYNIVISGFCRIREPGKAYELKMEMDEKRILRMEEVVYESLMQGLSDEDAYSSLMNDYLAQGDME KAYILDREIAHDGYLSESVTESVFINGLSKKARTREAKEILLSMISNSCLSKTTHTTYDALIENCSNNEFKSLVELVKGF RMRGLVSEAARAHDTMLHGNHKPDGGVYNFLIVEHCRCKNVDKAYNMYTRMVHYGFVPHMFSVLALIKALHRARRYNEMT WVIRNTLMSCNLYDSELLKVLNEIDVYTCQIEALLDVLAEIAMDGLLLNGGNCSYASAMIDPGFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 55 | 55 | 3.7E-5 | ||
| Phobius | 1 | 290 | 290 | - | – | |
| ProSiteProfiles | 16 | 50 | 35 | 9.087 | ||
| PANTHER | 18 | 142 | 125 | 6.5E-41 | – | |
| TIGRFAM | 22 | 51 | 30 | 7.2E-5 | ||
| Pfam | 22 | 48 | 27 | 0.0062 | ||
| Gene3D | 56 | 143 | 88 | 5.4E-22 | ||
| Pfam | 57 | 106 | 50 | 2.6E-15 | ||
| ProSiteProfiles | 58 | 92 | 35 | 12.682 | ||
| TIGRFAM | 60 | 94 | 35 | 2.3E-8 | ||
| ProSiteProfiles | 93 | 127 | 35 | 10.063 | ||
| TIGRFAM | 95 | 125 | 31 | 1.6E-5 | ||
| PANTHER | 142 | 327 | 186 | 6.5E-41 | – | |
| ProSiteProfiles | 142 | 176 | 35 | 7.837 | ||
| Gene3D | 144 | 230 | 87 | 2.4E-7 | ||
| ProSiteProfiles | 177 | 211 | 35 | 7.465 | ||
| Pfam | 183 | 209 | 27 | 0.36 | ||
| ProSiteProfiles | 229 | 263 | 35 | 6.401 | ||
| Gene3D | 231 | 360 | 130 | 1.1E-11 | ||
| ProSiteProfiles | 264 | 298 | 35 | 10.358 | ||
| Pfam | 267 | 296 | 30 | 0.018 | ||
| TIGRFAM | 267 | 298 | 32 | 1.4E-4 | ||
| Phobius | 291 | 310 | 20 | - | – | |
| Phobius | 311 | 385 | 75 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0504000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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