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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0505000 |
| Transcript ID | LotjaGi3g1v0505000.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G34370.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1; TrEMBL-Plants: tr|A0A151TG64|A0A151TG64_CAJCA Putative E3 ubiquitin-protein ligase ARI1; Found in the gene: LotjaGi3g1v0505000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92269819..92274809) extracted from Lotus japonicus Gifu genome v1.2.
GATTGATGAGTGAAGAAGCAAAGGCAAAGGTTACTGTGTGTGTGGGTTACCTTGTCTCCGCCCCTCTCTCTTGCCTTGCC GGCTCTCTCGTCGGAATTTCCGTACCCGATTTTCTCCGATCACCGGATTCGATCCAATCTCGAATCCCTAATTCGTCGAA TTCCATACCCTTCGAATTCGAATGGACGATTACGCTAGCACCGATGAGGAGTATCGTTACTCCGATCAGGATGACTCCCT TGACGACGACGACGACGACGCCTTCGAAAATGACGGCCAAGATTATGGCCTTCTCTCTTCCAAGGCTCCCACTAGTCAGG TCGCTTTCGATTCCAATTTCCCCTTTTTCATTCATTTGGGGTTTCTGTTTCACCCTCTTTTTTTTCGTTTCTGATTCTTA TTCTTATCACTGTGTTTTGATTATTGATTGGTACCGTGGTGTTTGTAACGGGGTTTAGAATATAAAAAATTGTTGATTTT GTTGAATTTCTGGGGTTTTTGACATCAAAGTTTGAATATTTTATTGAATTCTTATGTGGGTATTGTGCTGAATTGTCTAT ATTTGATGGGAATTCCCTTTTGAAAGTTTCCCAATTGATGTTTTTTTATGGGGTTTTAATCCATGGTTTGATGATCCTAC CACTGACTGTGTTTTACTGAACTGTTTTGTTACTTTTGTACTTGCAGGTGATAACTAAGGAGTCATTGCTAGCTGCACAG GTAACATGTGGGAAAAAAATAAAGTAGTGTGTTTTGTTGAGGTAAAAACATGTTTTTAGGTTTTACTGAAATTTCTATTC ACATTCATGCAGAGGGATGATTTGCGCAGAGTGATGGAGATGCTTTCGGTGAGGGAGCAACATGCGCGTACGCTGCTTAT TTATCATCGTTGGGATGTGGAGAAATTGTTTGCAGTGTATGTAGACAGGGGGAAAGAATTTCTGTTTCGTGAAGCTGGTG TTAGTGTGGATGAACATCGTGACTCGGTGGTTCATGCTTCTGTGATGTGCGAAATCTGCATCGAGGATGTTCCTAGTGAT GAAGCGACCAGAATGGACTGTGGTCACTGCTTTTGCAACTCCTGTGAGTGTTTGTATATTCTGTTATTCTTGACCTTTGG TTTTCTGAGATTTCGTAGGTGAAGACTAAAGAATGAATTTTGATCCTTCATGTCAATTATTACATAGTTACATGGCAATG TTATGTCATGCAAGAGAAAAACACAAAAGCAAAATTTAATGAACCCTACAGAAATAATAGTGGGTTCCACTATAGTTGCA TTTGTGTCTTCTCATATTCTAAAATGAGGTTGTCATCTTAGAGTGTGTTTGTATTTCTGTTAAATTCAAAGTTGATTTAC ATTGAAGGCAACACGGCAAAATCTCGCTTCTCCATTCCCACATTGGGGTGTGTTTTCCGACTCAAACATGAAACCAAATC CATAAAAATATTATATAGCTTTCATTGTTGATGGCATCGCTTCTATTGTTTTTGTTGTTGATGCAGTTATTAAGGGTCTA TGTCAGCCTTTTTATACCCCATTATCAAAGATTGATTACTAATTGTGATTTCATTATTCAATGGTTGAACTGGTAGAAAG TTGAGTGTTGCCAGAAGTTTTATTTCTTTGTTATCTTTTGCAAAACTATTGAAATTCATGCAAACTTCATTTGGAAGCCT TTTACATATTCATTAGCTTTTACAGGTTGGACAGAGCACTTTATTGTTAAGATAAATGAGGGTCAAAGTAAACGCATTAG ATGCATGGCGCACAAATGTAATTCCATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAAAAAGCACCCTGATTTGG CGGAGAAATATGAGCGGTTTCTTCTTGAATCCTACATTGAAGACAACAAGAGGGTTAAATGGTGTCCAAGCGTGCCTCAT TGTGGGAATGCAGTTCGCACTGAGGATGATAACTTGTGTGAGGTAGAATGTTCATGTGGCGAACAATTTTGTTTTAATTG CTTGTCAGAAGCACACTCCCCCTGTTCATGCTTGATGTGGGAGCTTTGGACTAAGAAATGTCGAGATGAATCAGAAACTG TTAATTGGATAACAGTTCATACAAAACCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGTGGTTGTAACTTGGTT AGCTGTATATGTGGCCAAGCATTTTGGTGAGTATATTCCTCCTTCTTGCATTATATATTCTCAATTTTTCATTCAGCTTT TCTTCTCTGTTTTTCGGATGTAAAGATTCACTTAATTTTAAATATGGTAATAGGGATCAGGAGTTTAAGCTACCTGTGAC TTCTTGTGCTAACATTATGTTTTCCATAACAATTTTCCACTTTTTTTTACAGTTGGTTGTGTGGTGGAGCCACTGGCCGA GATCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAACAAGAAAAGACAGCTGAACGGGCAAAAAG GGATCTTTATAGGTATATGCACTATCATAACCGATATAAAGCTCATACAGACTCCTTCAAGCTTGAAAGTAAACTAAAAG AGAACATACAAGGGAAGATTGCTATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTC TCCAGACTTTTCAGATCTAGGCGTGTCCTTTCGTATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAA AGATGAAATGTCAGAAGCTCAGAGGGAAATAAAACAGAACCTATTTGAGGATCAACAGCAGCAGCTTGAGGGCAACGTTG AAAAACTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTCAAGATGCAAAGGTGATGGAGTTAAGGATGCAAATAATC AATGTTTCAACAATTATTGACAAACTTTGTCAGAAAATGTAAGTGCTGCTTTATATAAGGTCCTTGTACATCTCTGACAG TTTGACCTTGATGAATGCCAATTCTAATACTTAATGCAGGTATGATTGCATCGAGAATGATTTATTGGGCTCTCTCCATC TTGGTGTTCACAGTATAGCTCCCTATAAATCAAAGGGCATAGAGAGGGCTTCAGAACTCTCAGATTGTTGGAACAATAAA GCCAATAATACTGGTAAGTGTTTATTGTACTTTTATTTATATTGGATTTTTGATAGACTTTGAGATAACTGTCAAATTAA GTATGCTCCTTAATATTCCATTACATGTATAATTGCATCAATATGTATACATATGTCGGGAGATTACAGTTATGGGGATC ATTTGGTGTTTGATTCTAACCTTGTTTTTTTTTATTATATTTTTTCATTAAATTAATGTGCTAATAGGAGAAAAAAATTC AAAACTTAATCTTTAAGTTTGTAGATGAATGAATATTACATACTTTCATTATGCTTATGGTTCTTAGTGAAGCTTATAAT GTGTTTTATTTGCCATTATTATTTTAACTGGTTTCACTTCTTGCAAAAAAATTATGACATGAAAATATGGTGCCAACTTG CTAGTTCTTATTTTATACTTTATTGTTATACTATGTTATGAATGTTTTTATATATGTTTTCTTCAGTTTGACTTTGTGGA TGCTCATCAGAAATGTTTCTGAGTGACAAGGATTATTGTATTAATACTGCAAGCGTAGGTGTAACTACAGATCATGATTG GGCTTCTGGATCAGGGTGTAGAGACGAGAGTGGATGTTCTTCGCGTAAGCGTGCTAGAAAAGAGGGTGTTGGAGGCGCTG GCTTTTTTGATCTAAACTTACCAGCTGAGTTTGTAGACAGAAATTGATTTTGAAGGAGACCTTATATACATACAGGCGTA CAGGTCTAACACAAATTGCTTTGCTGCTTTGATGGAATTTCATCATTTTGGGTATCACATCTGTGTAATTTATGCCCCTA TTTGTGCTATATCTTTTGCTCTGGCCATGCCTCGCTGCTGAGATGATTCTAAAGAAATTCCAAGTTTCGTATCTCTGCAT CATCTGCCTCTGCTTTGAAATCCTAAAGCGCTGTATATATAGCATTGGGCATTATTTCCTAGTAGTCTATGTAAATGTCT ACTTGGGGTTCTAGCAGCACCTTGAGTACAACTTTTAGGATATTCCTATGGAGTTACAAGTGAAGTTAACTTCACTTGTT TTTCTTCTATTCTATGCCTTTTGGGTAATTTTCCTGTTAAAGATTAAGGTATAATTTTCAAATATGAGACATTTCTTTTA AAAACAAATAACAATTAGTTGTTGAACTTTTATAGTTTCACCATTCAATAGTAGTAATTTAGTTTATCTAACTGTCGAGT TGAAAGTTATTTCATAGAGTACATTAGTTACAAGTAAAATTAGTTGTTGAAACTTGAAAGTCTACTTAGTCACACCATTT TATTTAACATAAGGATAAGTATATATTTTTCCATGTAACATAAGGGCGAATCTAAATTGGCCTCTCTTAAATTTGTGTAA CGTTTTTTTGTCTTACAATTTTGTTTTCTGAATTAAGTTCGAATTTTACCAAAGTGCATACATGATACATTTATTGTTAG GTCATAAGCTCACATGGTGGCCCTAGTCCGATCAAGGGTTGTTTACATGGACTTTTTATATTAGCTTTGGTGCCTCCATT TTTTTAAAGAAAACTGCTTGATGTTCTGAAACGAAATGCAAGAGGACGACTTAAGAGGCCGTTTAAGTTTTCACTAAATC CTACTCATTTATGGTTTTGAATTCTGAACTTTCTCGATCGATCTAACATGTATGAATTCTTGCATTTCGTTCATTTATCT CCCGTAACAAATAACATCGCTCTTTTTCAAATTAATTTTGGTCTCTTTTCTTACTCTTCTTTCACGTTCCTTCTCCCCAA ATCTAAACACCATCTTATACGGTGGCGGGTGTTGATCTTCTGATGGCTTTTTCAATATCCATCCTTTCCCTCCTCTGATT TCCCCCACTTTATTCACTTCCCCAAACCTCC
CDS sequence (LotjaGi3g1v0505000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGATTACGCTAGCACCGATGAGGAGTATCGTTACTCCGATCAGGATGACTCCCTTGACGACGACGACGACGACGC CTTCGAAAATGACGGCCAAGATTATGGCCTTCTCTCTTCCAAGGCTCCCACTAGTCAGGTGATAACTAAGGAGTCATTGC TAGCTGCACAGAGGGATGATTTGCGCAGAGTGATGGAGATGCTTTCGGTGAGGGAGCAACATGCGCGTACGCTGCTTATT TATCATCGTTGGGATGTGGAGAAATTGTTTGCAGTGTATGTAGACAGGGGGAAAGAATTTCTGTTTCGTGAAGCTGGTGT TAGTGTGGATGAACATCGTGACTCGGTGGTTCATGCTTCTGTGATGTGCGAAATCTGCATCGAGGATGTTCCTAGTGATG AAGCGACCAGAATGGACTGTGGTCACTGCTTTTGCAACTCCTGTTGGACAGAGCACTTTATTGTTAAGATAAATGAGGGT CAAAGTAAACGCATTAGATGCATGGCGCACAAATGTAATTCCATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAA AAAGCACCCTGATTTGGCGGAGAAATATGAGCGGTTTCTTCTTGAATCCTACATTGAAGACAACAAGAGGGTTAAATGGT GTCCAAGCGTGCCTCATTGTGGGAATGCAGTTCGCACTGAGGATGATAACTTGTGTGAGGTAGAATGTTCATGTGGCGAA CAATTTTGTTTTAATTGCTTGTCAGAAGCACACTCCCCCTGTTCATGCTTGATGTGGGAGCTTTGGACTAAGAAATGTCG AGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACAAAACCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATG GTGGTTGTAACTTGGTTAGCTGTATATGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCCACTGGCCGAGATCATACT TGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAACAAGAAAAGACAGCTGAACGGGCAAAAAGGGATCTTTA TAGGTATATGCACTATCATAACCGATATAAAGCTCATACAGACTCCTTCAAGCTTGAAAGTAAACTAAAAGAGAACATAC AAGGGAAGATTGCTATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTT TTCAGATCTAGGCGTGTCCTTTCGTATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGATGAAAT GTCAGAAGCTCAGAGGGAAATAAAACAGAACCTATTTGAGGATCAACAGCAGCAGCTTGAGGGCAACGTTGAAAAACTCT CTAAAATTTTGGAGGAGCCTTTTGAAACCTTTCAAGATGCAAAGGTGATGGAGTTAAGGATGCAAATAATCAATGTTTCA ACAATTATTGACAAACTTTGTCAGAAAATGTATGATTGCATCGAGAATGATTTATTGGGCTCTCTCCATCTTGGTGTTCA CAGTATAGCTCCCTATAAATCAAAGGGCATAGAGAGGGCTTCAGAACTCTCAGATTGTTGGAACAATAAAGCCAATAATA CTGTTTGA
Protein sequence (LotjaGi3g1v0505000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDYASTDEEYRYSDQDDSLDDDDDDAFENDGQDYGLLSSKAPTSQVITKESLLAAQRDDLRRVMEMLSVREQHARTLLI YHRWDVEKLFAVYVDRGKEFLFREAGVSVDEHRDSVVHASVMCEICIEDVPSDEATRMDCGHCFCNSCWTEHFIVKINEG QSKRIRCMAHKCNSICDEAVVRTLLSKKHPDLAEKYERFLLESYIEDNKRVKWCPSVPHCGNAVRTEDDNLCEVECSCGE QFCFNCLSEAHSPCSCLMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHT WSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKENIQGKIAISEEKDSTLRDYSWVNNGLSRL FRSRRVLSYSYAFAFYMFGDELFKDEMSEAQREIKQNLFEDQQQQLEGNVEKLSKILEEPFETFQDAKVMELRMQIINVS TIIDKLCQKMYDCIENDLLGSLHLGVHSIAPYKSKGIERASELSDCWNNKANNTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | - | – | |
| PANTHER | 2 | 516 | 515 | 1.7E-262 | ||
| PANTHER | 2 | 516 | 515 | 1.7E-262 | – | |
| MobiDBLite | 14 | 31 | 18 | - | – | |
| Gene3D | 117 | 208 | 92 | 1.8E-19 | ||
| ProSiteProfiles | 119 | 333 | 215 | 46.344 | – | |
| SUPERFAMILY | 121 | 206 | 86 | 3.18E-18 | – | |
| ProSiteProfiles | 123 | 171 | 49 | 9.745 | ||
| SUPERFAMILY | 194 | 262 | 69 | 5.89E-11 | – | |
| SMART | 194 | 256 | 63 | 1.1E-22 | ||
| Pfam | 194 | 256 | 63 | 4.7E-14 | ||
| Gene3D | 252 | 498 | 247 | 2.1E-66 | – | |
| SMART | 264 | 329 | 66 | 0.01 | ||
| SUPERFAMILY | 264 | 321 | 58 | 7.06E-14 | – | |
| Pfam | 273 | 314 | 42 | 1.2E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0505000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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