Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0505000 |
| Transcript ID | LotjaGi3g1v0505000.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G34370.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1; TrEMBL-Plants: tr|A0A0S3SDI2|A0A0S3SDI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92270527..92274798) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAAGCAAAGGCAAAGGTTACTGTGTGTGTGGGTTACCTTGTCTCCGCCCCTCTCTCTTGCCTTGCCGGCTCTCTCGT CGGAATTTCCGTACCCGATTTTCTCCGATCACCGGATTCGATCCAATCTCGAATCCCTAATTCGTCGAATTCCATACCCT TCGAATTCGAATGGACGATTACGCTAGCACCGATGAGGAGTATCGTTACTCCGATCAGGATGACTCCCTTGACGACGACG ACGACGACGCCTTCGAAAATGACGGCCAAGATTATGGCCTTCTCTCTTCCAAGGCTCCCACTAGTCAGGTCGCTTTCGAT TCCAATTTCCCCTTTTTCATTCATTTGGGGTTTCTGTTTCACCCTCTTTTTTTTCGTTTCTGATTCTTATTCTTATCACT GTGTTTTGATTATTGATTGGTACCGTGGTGTTTGTAACGGGGTTTAGAATATAAAAAATTGTTGATTTTGTTGAATTTCT GGGGTTTTTGACATCAAAGTTTGAATATTTTATTGAATTCTTATGTGGGTATTGTGCTGAATTGTCTATATTTGATGGGA ATTCCCTTTTGAAAGTTTCCCAATTGATGTTTTTTTATGGGGTTTTAATCCATGGTTTGATGATCCTACCACTGACTGTG TTTTACTGAACTGTTTTGTTACTTTTGTACTTGCAGGTGATAACTAAGGAGTCATTGCTAGCTGCACAGGTAACATGTGG GAAAAAAATAAAGTAGTGTGTTTTGTTGAGGTAAAAACATGTTTTTAGGTTTTACTGAAATTTCTATTCACATTCATGCA GAGGGATGATTTGCGCAGAGTGATGGAGATGCTTTCGGTGAGGGAGCAACATGCGCGTACGCTGCTTATTTATCATCGTT GGGATGTGGAGAAATTGTTTGCAGTGTATGTAGACAGGGGGAAAGAATTTCTGTTTCGTGAAGCTGGTGTTAGTGTGGAT GAACATCGTGACTCGGTGGTTCATGCTTCTGTGATGTGCGAAATCTGCATCGAGGATGTTCCTAGTGATGAAGCGACCAG AATGGACTGTGGTCACTGCTTTTGCAACTCCTGTGAGTGTTTGTATATTCTGTTATTCTTGACCTTTGGTTTTCTGAGAT TTCGTAGGTGAAGACTAAAGAATGAATTTTGATCCTTCATGTCAATTATTACATAGTTACATGGCAATGTTATGTCATGC AAGAGAAAAACACAAAAGCAAAATTTAATGAACCCTACAGAAATAATAGTGGGTTCCACTATAGTTGCATTTGTGTCTTC TCATATTCTAAAATGAGGTTGTCATCTTAGAGTGTGTTTGTATTTCTGTTAAATTCAAAGTTGATTTACATTGAAGGCAA CACGGCAAAATCTCGCTTCTCCATTCCCACATTGGGGTGTGTTTTCCGACTCAAACATGAAACCAAATCCATAAAAATAT TATATAGCTTTCATTGTTGATGGCATCGCTTCTATTGTTTTTGTTGTTGATGCAGTTATTAAGGGTCTATGTCAGCCTTT TTATACCCCATTATCAAAGATTGATTACTAATTGTGATTTCATTATTCAATGGTTGAACTGGTAGAAAGTTGAGTGTTGC CAGAAGTTTTATTTCTTTGTTATCTTTTGCAAAACTATTGAAATTCATGCAAACTTCATTTGGAAGCCTTTTACATATTC ATTAGCTTTTACAGGTTGGACAGAGCACTTTATTGTTAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCGC ACAAATGTAATTCCATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAAAAAGCACCCTGATTTGGCGGAGAAATAT GAGCGGTTTCTTCTTGAATCCTACATTGAAGACAACAAGAGGGTTAAATGGTGTCCAAGCGTGCCTCATTGTGGGAATGC AGTTCGCACTGAGGATGATAACTTGTGTGAGGTAGAATGTTCATGTGGCGAACAATTTTGTTTTAATTGCTTGTCAGAAG CACACTCCCCCTGTTCATGCTTGATGTGGGAGCTTTGGACTAAGAAATGTCGAGATGAATCAGAAACTGTTAATTGGATA ACAGTTCATACAAAACCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATATG TGGCCAAGCATTTTGGTGAGTATATTCCTCCTTCTTGCATTATATATTCTCAATTTTTCATTCAGCTTTTCTTCTCTGTT TTTCGGATGTAAAGATTCACTTAATTTTAAATATGGTAATAGGGATCAGGAGTTTAAGCTACCTGTGACTTCTTGTGCTA ACATTATGTTTTCCATAACAATTTTCCACTTTTTTTTACAGTTGGTTGTGTGGTGGAGCCACTGGCCGAGATCATACTTG GTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAACAAGAAAAGACAGCTGAACGGGCAAAAAGGGATCTTTATA GGTATATGCACTATCATAACCGATATAAAGCTCATACAGACTCCTTCAAGCTTGAAAGTAAACTAAAAGAGAACATACAA GGGAAGATTGCTATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTT CAGATCTAGGCGTGTCCTTTCGTATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGATGAAATGT CAGAAGCTCAGAGGGAAATAAAACAGAACCTATTTGAGGATCAACAGCAGCAGCTTGAGGGCAACGTTGAAAAACTCTCT AAAATTTTGGAGGAGCCTTTTGAAACCTTTCAAGATGCAAAGGTGATGGAGTTAAGGATGCAAATAATCAATGTTTCAAC AATTATTGACAAACTTTGTCAGAAAATGTAAGTGCTGCTTTATATAAGGTCCTTGTACATCTCTGACAGTTTGACCTTGA TGAATGCCAATTCTAATACTTAATGCAGGTATGATTGCATCGAGAATGATTTATTGGGCTCTCTCCATCTTGGTGTTCAC AGTATAGCTCCCTATAAATCAAAGGGCATAGAGAGGGCTTCAGAACTCTCAGATTGTTGGAACAATAAAGCCAATAATAC TGGTAAGTGTTTATTGTACTTTTATTTATATTGGATTTTTGATAGACTTTGAGATAACTGTCAAATTAAGTATGCTCCTT AATATTCCATTACATGTATAATTGCATCAATATGTATACATATGTCGGGAGATTACAGTTATGGGGATCATTTGGTGTTT GATTCTAACCTTGTTTTTTTTTATTATATTTTTTCATTAAATTAATGTGCTAATAGGAGAAAAAAATTCAAAACTTAATC TTTAAGTTTGTAGATGAATGAATATTACATACTTTCATTATGCTTATGGTTCTTAGTGAAGCTTATAATGTGTTTTATTT GCCATTATTATTTTAACTGGTTTCACTTCTTGCAAAAAAATTATGACATGAAAATATGGTGCCAACTTGCTAGTTCTTAT TTTATACTTTATTGTTATACTATGTTATGAATGTTTTTATATATGTTTTCTTCAGTTTGACTTTGTGGATGCTCATCAGA AATGTTTCTGAGTGACAAGGATTATTGTATTAATACTGCAAGCGTAGGTGTAACTACAGATCATGATTGGGCTTCTGGAT CAGGGTGTAGAGACGAGAGTGGATGTTCTTCGCGTAAGCGTGCTAGAAAAGAGGGTGTTGGAGGCGCTGGCTTTTTTGAT CTAAACTTACCAGCTGAGTTTGTAGACAGAAATTGATTTTGAAGGAGACCTTATATACATACAGGCGTACAGGTCTAACA CAAATTGCTTTGCTGCTTTGATGGAATTTCATCATTTTGGGTATCACATCTGTGTAATTTATGCCCCTATTTGTGCTATA TCTTTTGCTCTGGCCATGCCTCGCTGCTGAGATGATTCTAAAGAAATTCCAAGTTTCGTATCTCTGCATCATCTGCCTCT GCTTTGAAATCCTAAAGCGCTGTATATATAGCATTGGGCATTATTTCCTAGTAGTCTATGTAAATGTCTACTTGGGGTTC TAGCAGCACCTTGAGTACAACTTTTAGGATATTCCTATGGAGTTACAAGTGAAGTTAACTTCACTTGTTTTTCTTCTATT CTATGCCTTTTGGGTAATTTTCCTGTTAAAGATTAAGGTATAATTTTCAAATATGAGACATTTCTTTTAAAAACAAATAA CAATTAGTTGTTGAACTTTTATAGTTTCACCA
CDS sequence (LotjaGi3g1v0505000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGATTACGCTAGCACCGATGAGGAGTATCGTTACTCCGATCAGGATGACTCCCTTGACGACGACGACGACGACGC CTTCGAAAATGACGGCCAAGATTATGGCCTTCTCTCTTCCAAGGCTCCCACTAGTCAGGTGATAACTAAGGAGTCATTGC TAGCTGCACAGAGGGATGATTTGCGCAGAGTGATGGAGATGCTTTCGGTGAGGGAGCAACATGCGCGTACGCTGCTTATT TATCATCGTTGGGATGTGGAGAAATTGTTTGCAGTGTATGTAGACAGGGGGAAAGAATTTCTGTTTCGTGAAGCTGGTGT TAGTGTGGATGAACATCGTGACTCGGTGGTTCATGCTTCTGTGATGTGCGAAATCTGCATCGAGGATGTTCCTAGTGATG AAGCGACCAGAATGGACTGTGGTCACTGCTTTTGCAACTCCTGTTGGACAGAGCACTTTATTGTTAAGATAAATGAGGGT CAAAGTAAACGCATTAGATGCATGGCGCACAAATGTAATTCCATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAA AAAGCACCCTGATTTGGCGGAGAAATATGAGCGGTTTCTTCTTGAATCCTACATTGAAGACAACAAGAGGGTTAAATGGT GTCCAAGCGTGCCTCATTGTGGGAATGCAGTTCGCACTGAGGATGATAACTTGTGTGAGGTAGAATGTTCATGTGGCGAA CAATTTTGTTTTAATTGCTTGTCAGAAGCACACTCCCCCTGTTCATGCTTGATGTGGGAGCTTTGGACTAAGAAATGTCG AGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACAAAACCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATG GTGGTTGTAACTTGGTTAGCTGTATATGTGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCCACTGGCCGAGATCATACT TGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAACAAGAAAAGACAGCTGAACGGGCAAAAAGGGATCTTTA TAGGTATATGCACTATCATAACCGATATAAAGCTCATACAGACTCCTTCAAGCTTGAAAGTAAACTAAAAGAGAACATAC AAGGGAAGATTGCTATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTT TTCAGATCTAGGCGTGTCCTTTCGTATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGATGAAAT GTCAGAAGCTCAGAGGGAAATAAAACAGAACCTATTTGAGGATCAACAGCAGCAGCTTGAGGGCAACGTTGAAAAACTCT CTAAAATTTTGGAGGAGCCTTTTGAAACCTTTCAAGATGCAAAGGTGATGGAGTTAAGGATGCAAATAATCAATGTTTCA ACAATTATTGACAAACTTTGTCAGAAAATGTATGATTGCATCGAGAATGATTTATTGGGCTCTCTCCATCTTGGTGTTCA CAGTATAGCTCCCTATAAATCAAAGGGCATAGAGAGGGCTTCAGAACTCTCAGATTGTTGGAACAATAAAGCCAATAATA CTGGGTGTAGAGACGAGAGTGGATGTTCTTCGCGTAAGCGTGCTAGAAAAGAGGGTGTTGGAGGCGCTGGCTTTTTTGAT CTAAACTTACCAGCTGAGTTTGTAGACAGAAATTGA
Protein sequence (LotjaGi3g1v0505000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDYASTDEEYRYSDQDDSLDDDDDDAFENDGQDYGLLSSKAPTSQVITKESLLAAQRDDLRRVMEMLSVREQHARTLLI YHRWDVEKLFAVYVDRGKEFLFREAGVSVDEHRDSVVHASVMCEICIEDVPSDEATRMDCGHCFCNSCWTEHFIVKINEG QSKRIRCMAHKCNSICDEAVVRTLLSKKHPDLAEKYERFLLESYIEDNKRVKWCPSVPHCGNAVRTEDDNLCEVECSCGE QFCFNCLSEAHSPCSCLMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHT WSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKENIQGKIAISEEKDSTLRDYSWVNNGLSRL FRSRRVLSYSYAFAFYMFGDELFKDEMSEAQREIKQNLFEDQQQQLEGNVEKLSKILEEPFETFQDAKVMELRMQIINVS TIIDKLCQKMYDCIENDLLGSLHLGVHSIAPYKSKGIERASELSDCWNNKANNTGCRDESGCSSRKRARKEGVGGAGFFD LNLPAEFVDRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | - | – | |
| PANTHER | 2 | 531 | 530 | 3.9E-263 | – | |
| PANTHER | 2 | 531 | 530 | 3.9E-263 | ||
| MobiDBLite | 14 | 31 | 18 | - | – | |
| Gene3D | 117 | 208 | 92 | 2.0E-19 | ||
| ProSiteProfiles | 119 | 333 | 215 | 46.344 | – | |
| SUPERFAMILY | 121 | 206 | 86 | 3.14E-18 | – | |
| ProSiteProfiles | 123 | 171 | 49 | 9.745 | ||
| Pfam | 194 | 256 | 63 | 5.1E-14 | ||
| SMART | 194 | 256 | 63 | 1.1E-22 | ||
| SUPERFAMILY | 194 | 262 | 69 | 1.29E-10 | – | |
| Gene3D | 252 | 498 | 247 | 2.5E-66 | – | |
| SUPERFAMILY | 264 | 321 | 58 | 7.65E-14 | – | |
| SMART | 264 | 329 | 66 | 0.01 | ||
| Pfam | 273 | 314 | 42 | 1.3E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi3g1v0505000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…