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LotjaGi3g1v0505000.6

Overview

Field Value
Gene ID LotjaGi3g1v0505000
Transcript ID LotjaGi3g1v0505000.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description RING/U-box superfamily protein; TAIR: AT4G34370.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1; TrEMBL-Plants: tr|A0A0S3SDI2|A0A0S3SDI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0505000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:92271003..92274289) extracted from Lotus japonicus Gifu genome v1.2.

TTATTGAATTCTTATGTGGGTATTGTGCTGAATTGTCTATATTTGATGGGAATTCCCTTTTGAAAGTTTCCCAATTGATG TTTTTTTATGGGGTTTTAATCCATGGTTTGATGATCCTACCACTGACTGTGTTTTACTGAACTGTTTTGTTACTTTTGTA CTTGCAGGTGATAACTAAGGAGTCATTGCTAGCTGCACAGGTAACATGTGGGAAAAAAATAAAGTAGTGTGTTTTGTTGA GGTAAAAACATGTTTTTAGGTTTTACTGAAATTTCTATTCACATTCATGCAGAGGGATGATTTGCGCAGAGTGATGGAGA TGCTTTCGGTGAGGGAGCAACATGCGCGTACGCTGCTTATTTATCATCGTTGGGATGTGGAGAAATTGTTTGCAGTGTAT GTAGACAGGGGGAAAGAATTTCTGTTTCGTGAAGCTGGTGTTAGTGTGGATGAACATCGTGACTCGGTGGTTCATGCTTC TGTGATGTGCGAAATCTGCATCGAGGATGTTCCTAGTGATGAAGCGACCAGAATGGACTGTGGTCACTGCTTTTGCAACT CCTGTGAGTGTTTGTATATTCTGTTATTCTTGACCTTTGGTTTTCTGAGATTTCGTAGGTGAAGACTAAAGAATGAATTT TGATCCTTCATGTCAATTATTACATAGTTACATGGCAATGTTATGTCATGCAAGAGAAAAACACAAAAGCAAAATTTAAT GAACCCTACAGAAATAATAGTGGGTTCCACTATAGTTGCATTTGTGTCTTCTCATATTCTAAAATGAGGTTGTCATCTTA GAGTGTGTTTGTATTTCTGTTAAATTCAAAGTTGATTTACATTGAAGGCAACACGGCAAAATCTCGCTTCTCCATTCCCA CATTGGGGTGTGTTTTCCGACTCAAACATGAAACCAAATCCATAAAAATATTATATAGCTTTCATTGTTGATGGCATCGC TTCTATTGTTTTTGTTGTTGATGCAGTTATTAAGGGTCTATGTCAGCCTTTTTATACCCCATTATCAAAGATTGATTACT AATTGTGATTTCATTATTCAATGGTTGAACTGGTAGAAAGTTGAGTGTTGCCAGAAGTTTTATTTCTTTGTTATCTTTTG CAAAACTATTGAAATTCATGCAAACTTCATTTGGAAGCCTTTTACATATTCATTAGCTTTTACAGGTTGGACAGAGCACT TTATTGTTAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCGCACAAATGTAATTCCATTTGTGATGAAGCT GTCGTAAGAACTCTACTCAGTAAAAAGCACCCTGATTTGGCGGAGAAATATGAGCGGTTTCTTCTTGAATCCTACATTGA AGACAACAAGAGGGTTAAATGGTGTCCAAGCGTGCCTCATTGTGGGAATGCAGTTCGCACTGAGGATGATAACTTGTGTG AGGTAGAATGTTCATGTGGCGAACAATTTTGTTTTAATTGCTTGTCAGAAGCACACTCCCCCTGTTCATGCTTGATGTGG GAGCTTTGGACTAAGAAATGTCGAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACAAAACCTTGTCCAAAGTG CCACAAACCGGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATATGTGGCCAAGCATTTTGGTGAGTATATTCCT CCTTCTTGCATTATATATTCTCAATTTTTCATTCAGCTTTTCTTCTCTGTTTTTCGGATGTAAAGATTCACTTAATTTTA AATATGGTAATAGGGATCAGGAGTTTAAGCTACCTGTGACTTCTTGTGCTAACATTATGTTTTCCATAACAATTTTCCAC TTTTTTTTACAGTTGGTTGTGTGGTGGAGCCACTGGCCGAGATCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTC GCTACAAAGAACAAGAAAAGACAGCTGAACGGGCAAAAAGGGATCTTTATAGGTATATGCACTATCATAACCGATATAAA GCTCATACAGACTCCTTCAAGCTTGAAAGTAAACTAAAAGAGAACATACAAGGGAAGATTGCTATTTCAGAAGAAAAAGA TTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCGTATTCAT ATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGATGAAATGTCAGAAGCTCAGAGGGAAATAAAACAGAAC CTATTTGAGGATCAACAGCAGCAGCTTGAGGGCAACGTTGAAAAACTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTT TCAAGATGCAAAGGTGATGGAGTTAAGGATGCAAATAATCAATGTTTCAACAATTATTGACAAACTTTGTCAGAAAATGT AAGTGCTGCTTTATATAAGGTCCTTGTACATCTCTGACAGTTTGACCTTGATGAATGCCAATTCTAATACTTAATGCAGG TATGATTGCATCGAGAATGATTTATTGGGCTCTCTCCATCTTGGTGTTCACAGTATAGCTCCCTATAAATCAAAGGGCAT AGAGAGGGCTTCAGAACTCTCAGATTGTTGGAACAATAAAGCCAATAATACTGGTAAGTGTTTATTGTACTTTTATTTAT ATTGGATTTTTGATAGACTTTGAGATAACTGTCAAATTAAGTATGCTCCTTAATATTCCATTACATGTATAATTGCATCA ATATGTATACATATGTCGGGAGATTACAGTTATGGGGATCATTTGGTGTTTGATTCTAACCTTGTTTTTTTTTATTATAT TTTTTCATTAAATTAATGTGCTAATAGGAGAAAAAAATTCAAAACTTAATCTTTAAGTTTGTAGATGAATGAATATTACA TACTTTCATTATGCTTATGGTTCTTAGTGAAGCTTATAATGTGTTTTATTTGCCATTATTATTTTAACTGGTTTCACTTC TTGCAAAAAAATTATGACATGAAAATATGGTGCCAACTTGCTAGTTCTTATTTTATACTTTATTGTTATACTATGTTATG AATGTTTTTATATATGTTTTCTTCAGTTTGACTTTGTGGATGCTCATCAGAAATGTTTCTGAGTGACAAGGATTATTGTA TTAATACTGCAAGCGTAGGTGTAACTACAGATCATGATTGGGCTTCTGGATCAGGGTGTAGAGACGAGAGTGGATGTTCT TCGCGTAAGCGTGCTAGAAAAGAGGGTGTTGGAGGCGCTGGCTTTTTTGATCTAAACTTACCAGCTGAGTTTGTAGACAG AAATTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0505000.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGATGCTTTCGGTGAGGGAGCAACATGCGCGTACGCTGCTTATTTATCATCGTTGGGATGTGGAGAAATTGTTTGC AGTGTATGTAGACAGGGGGAAAGAATTTCTGTTTCGTGAAGCTGGTGTTAGTGTGGATGAACATCGTGACTCGGTGGTTC ATGCTTCTGTGATGTGCGAAATCTGCATCGAGGATGTTCCTAGTGATGAAGCGACCAGAATGGACTGTGGTCACTGCTTT TGCAACTCCTGTTGGACAGAGCACTTTATTGTTAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCGCACAA ATGTAATTCCATTTGTGATGAAGCTGTCGTAAGAACTCTACTCAGTAAAAAGCACCCTGATTTGGCGGAGAAATATGAGC GGTTTCTTCTTGAATCCTACATTGAAGACAACAAGAGGGTTAAATGGTGTCCAAGCGTGCCTCATTGTGGGAATGCAGTT CGCACTGAGGATGATAACTTGTGTGAGGTAGAATGTTCATGTGGCGAACAATTTTGTTTTAATTGCTTGTCAGAAGCACA CTCCCCCTGTTCATGCTTGATGTGGGAGCTTTGGACTAAGAAATGTCGAGATGAATCAGAAACTGTTAATTGGATAACAG TTCATACAAAACCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATATGTGGC CAAGCATTTTGTTGGTTGTGTGGTGGAGCCACTGGCCGAGATCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCG CTACAAAGAACAAGAAAAGACAGCTGAACGGGCAAAAAGGGATCTTTATAGGTATATGCACTATCATAACCGATATAAAG CTCATACAGACTCCTTCAAGCTTGAAAGTAAACTAAAAGAGAACATACAAGGGAAGATTGCTATTTCAGAAGAAAAAGAT TCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCGTATTCATA TGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGATGAAATGTCAGAAGCTCAGAGGGAAATAAAACAGAACC TATTTGAGGATCAACAGCAGCAGCTTGAGGGCAACGTTGAAAAACTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTT CAAGATGCAAAGGTGATGGAGTTAAGGATGCAAATAATCAATGTTTCAACAATTATTGACAAACTTTGTCAGAAAATGTA TGATTGCATCGAGAATGATTTATTGGGCTCTCTCCATCTTGGTGTTCACAGTATAGCTCCCTATAAATCAAAGGGCATAG AGAGGGCTTCAGAACTCTCAGATTGTTGGAACAATAAAGCCAATAATACTGGTGTAACTACAGATCATGATTGGGCTTCT GGATCAGGGTGTAGAGACGAGAGTGGATGTTCTTCGCGTAAGCGTGCTAGAAAAGAGGGTGTTGGAGGCGCTGGCTTTTT TGATCTAAACTTACCAGCTGAGTTTGTAGACAGAAATTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0505000.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEMLSVREQHARTLLIYHRWDVEKLFAVYVDRGKEFLFREAGVSVDEHRDSVVHASVMCEICIEDVPSDEATRMDCGHCF CNSCWTEHFIVKINEGQSKRIRCMAHKCNSICDEAVVRTLLSKKHPDLAEKYERFLLESYIEDNKRVKWCPSVPHCGNAV RTEDDNLCEVECSCGEQFCFNCLSEAHSPCSCLMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICG QAFCWLCGGATGRDHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKENIQGKIAISEEKD STLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMSEAQREIKQNLFEDQQQQLEGNVEKLSKILEEPFETF QDAKVMELRMQIINVSTIIDKLCQKMYDCIENDLLGSLHLGVHSIAPYKSKGIERASELSDCWNNKANNTGVTTDHDWAS GSGCRDESGCSSRKRARKEGVGGAGFFDLNLPAEFVDRN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11685
1 468 468 1.2E-242
IPR031127
PANTHER
PTHR11685:SF258
1 468 468 1.2E-242 –
Gene3D
G3DSA:3.30.40.10
53 144 92 1.7E-19
IPR013083
ProSiteProfiles
PS51873
55 269 215 46.344 –
SUPERFAMILY
SSF57850
57 142 86 3.05E-18 –
ProSiteProfiles
PS50089
59 107 49 9.745
IPR001841
SMART
SM00647
130 192 63 1.1E-22
IPR002867
Pfam
PF01485
130 192 63 4.5E-14
IPR002867
SUPERFAMILY
SSF57850
130 198 69 5.59E-11 –
Gene3D
G3DSA:1.20.120.1750
188 434 247 2.0E-66 –
SUPERFAMILY
SSF57850
200 257 58 7.77E-14 –
SMART
SM00647
200 265 66 0.01
IPR002867
Pfam
PF01485
209 250 42 1.1E-5
IPR002867

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0505000.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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