Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0513600 |
| Transcript ID | LotjaGi3g1v0513600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding CRS1 / YhbY (CRM) domain protein; TAIR: AT2G21350.1 RNA-binding CRS1 / YhbY (CRM) domain protein; Swiss-Prot: sp|P54454|YQEI_BACSU Probable RNA-binding protein YqeI; TrEMBL-Plants: tr|I3S7L9|I3S7L9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0513600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93061461..93066185) extracted from Lotus japonicus Gifu genome v1.2.
ACAGCATTCCATAAATCCTTAACAAAACGCGAAACCCGAGAGAGAGAGTTCAATCCATTCAGAAATGGCGGCAGCGGCAG CGGCAGCATCATCGTCGGTCCTCCTCCTTCTCCGTTCACAACCACCGTCTCCGTCTCCGTCACCGTCACACTCTTCTTCT TCTCTCATTTCTTCCATTCTCAAACCTCTTCTTCTTTCTTCAAATGCTCTTTCACCCACTCGCCTTCGACAAATCCATGT TCCACCACTTCATAAACCTCTCTTCGGCTCTTTCTTCTCCACCACCACACCCTCTTCTTCCTCCGTCGCGTTCCCTCACC CACCTCCGCTCGCTGCTGTTTCCGGAAGCTCAGCACAAGAAACAATAGCAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAA GAAGAAGACGGGGTTGATGGCGAATTGGAACAGTTTGATGATGATGAAACAGATTCTGAAGACGACGAATTGGAAACTGA AGGAGGCGGCGAACTTGAAGATGCCCAAGTGGGTGGTTCAACTTCGTCTCCGTTGGTGGAGAAGAGGAAAGAGAGGTTGA AATTGGAAGTTCCCAGTTTAACTGTGAAGGAAAAGAAAGAGCTAGCTTCATTTGCTCACAGTTTGGGGAAAAAGCTCAAG TCCCAGTTGGTAGGAAAGTCTGGTGTTACCTCCAATCTTGCCACTTCTTTCATTGAGACCCTTGAAGCCAACGAGCTTCT CAAGGTATTAATCCTCTGAGTTTCTCTATGGCAATGCTTATCATGTTTCCCTCAATTGTGTTTAGTTGTTGTCATGGTTT GTGTTTGATGCATTTTGGTAATACATGGGAACATGAACTTGTTTCCCAATTTTCATTACAAGTTATAACTTGAGCTTGTG GTAGATGATTTGTTCTTTTTTTGGGGGGCTAGTGTTTGATATTTTGATATGCTTCCAATTCATAGAGTTTTGGATGCTTG TTTAACTGGTTGACTACTTCTAACAGTAGTTTACTCATGTTTATCATCTGTAATTGCCACTTTGCATGCTTTTATGTTGT GATTTAGGACTGTGGGACTTGAATAGTTCATTGTAGCTATGTGTTCTTCATTTTAAGCCTTTGCAATTATAAACCATTAA GTGAATGCTAATAGTAACTGCTACTTGTCATGAATGAGAGCTTTCCCTTAGCCTGTGTTTTTCTGATTCTTACTGGGATG ATTTCATAAACTTCAGTGTTATACTTGAATTGGTCTAAATATTGAGTTGCCAGGGGATTTTGTGCATGTTTAGAGACCCT TTTGCAATAGATTATGAAGCCAGAATCAAAGAAGGGGAGAAGCTAAGTTGCTTCTGAATTTAAGAATTGATTATAATGTA AGACAAGCTGATCTAAACATGCTATTTTAGTTACTTTGCATGCTTAGAGAACAAAATGGAGGATTAGCTAATGTCTCAGT TGATTTTAGCTTTAATAATCACTAAATTATGTTATACTAGACTGTGGGGAGTTTTTTTTTAAGCTTCTATGATCTGTCTA TTCTGCCTTTGTCGTTTGTTTTCTCTTTGCTTTAACCATTACAATGAAGGTGACCTTGTTCAAAAATTTATTCTTATTAA TATATGCATGCAATTTGAATGGAATTGGCAGATTAAAGTACATCGGACTTGTCCGGGTGAGTTAGAAGATGCGGTGAAGC AGTTGGAAGAATTAACTGGTTCAGTGACTGTTAGTCAGATTGGTCGAACATTGATTATATACAAGCCCAGTCTCACCAAA TTGAAGGCAGAAGAAAAGAAAAAACAAGTTCGCAACCTTATTCTGAAAAAACAATTTAAACCAAGAGTGTTTAACAAGGT GAACGTCGTTGTGCCTTCAATTTTTTTTTAATGCATCTATGATCTATTATTTTGGTCTCTTGCTATGTTTCGCTAATATT CTGATGAAACTGCAGAGTAAGGAACCACCCAAATCATCACGGCCAGGTTCAACATGGAAAAGGAGAGACAGTAGGTGATA AACACATCATAAGGTTGACCTTATGGTTGTTGGCCTGAACAAGGTTGGGGTTTTCTTGCATAGAAACCAAAGCTCAAGGT TGAGGACTTGTTATTGGTTGCTGGGAGTTCACTTTGGATCAAGGAAAGTTTGCATGAAGTGAGGGATTGTATTGTAACCG GAGCTGGAGAACATAGATCTTGAATTCAGTTTAGTTTGGTTTGTCCATGAACTAAATCAGTATATTCTAATGCAATGGAC ATGTTGTAATCTGAAATTTATCCTTTTAATTACATTTTTTTTCAACTTCGAATTTTGCTTGCTTCCAATTCACTAGATAT AATGCCTTTTGTAGGTCCTAAAATTGATTCGGAGGTAAGAAAAAATTATCCAAACATGTTATTATTCTTGAAGGAAGTCC TAAATCATGTTATTATTCTTGGAAGCAACTACCTGGGCCGAGGATGAGTAGTCTGAGGAATGAGGTGCTAATGTCAACAG ATAGGATTGGCTACTGAAATGAACCACATTTGCTACTGATAATATTTAAATTTTTTGCCAACAAAGGACTTCATATATGT TTTTGTTGAATTCAATGTCAATCCACGTTTGAAAATCTTAGTTCTCCATTAATGCATTGAGATGTGTTTTTTTTCTGTTT GCATTTTTTGCATTGCAAACAAAAACCAAATGGGACACTATTGACAGTCTCTTGATTGGCATGCTGTAAATAATGTCTGT TGTTCACCTTAAAAGCATTCTTAATAATTATATTAGATACATGAGGAAGATTGAGGCAGTTACTTGCGTAAACTGCATCC TATAACAGTGTAGATGTAATTTAACTCGTCCCTTAAGTAGAACTGCATCCTATTTAACATACTAATTGAGACTAACACAA CATTCTCCTATCCTTGTAAGGTGTCATGAACTGTAAAGTGTAAAATCCAAGGTTCTAAGTTAAGCAGTCTTTAGCTTTTG CAGCTCATTCTGGTTAATATCTTCCGCGTATAAAATGCCAGTGGGAGAAAGAAGACGCTGGAGGGCCAATGAAAACCGAG CCTAGCAACAACAAGAGAGTTGCAAATCAGAATATTTAAAGAATTAATCCTCTTAACTTGATGCAAGCTATAGATCTTGT TCTCACCCATTGAAATAATGCAAGGGCAAACCAACAACCTTGCAAACCGTATCTGCTACTCAAGAACTGGCATTATGAAA ATTTGGATGGTGTTAGATTCCCCAAACAAGATTGTTGAACAGAACATAAAGATAGAAGGTACAATGAGAGAAAATTCGCT TATGGAGAATTTTATCCCAATGGTAGAGCTACAAGTTAAGTTCTATTACAAGTTACAAAGGGAATATCCCATCACAGATC ACACTGAGAATTGCTCAGTGACTATTATTTCACAAAATGTCCTCCTTAAAAATGACAATTTTTTCTCCCATTTTAACTAA GCTCCTCCTCTCCAACTCACTGGTTTATTCCTTTAGGAATATACCCACTGGGGTTTTAAATTGTGGTCTGCAACGCTTGC AGCGGCAACTTAAAAGGTTTTTGAGTTCCTATCGACATCACGACCGCGATAGCGATAAACATCAACCCACAATTGTCTGC AATTCCGCAATGCAGTGGCAGCCATAATTTAAAACTCTGATACCCCCCCCCCCCCCCCACACACACTCTATTCGCCTTAT CTAACACTCATTCTAACAGGTACTCAGGCAAAACGGACCAAGCAATATTACTATTACTATATACACATGGAGATCAAGAA AAGATCGTTTACCAATAGTACTAGTACACCCACGCAAAAGCATCCGCCCATTGACAAACTTATATATCTTAGATCCCTCC CAGCCTGCATGAGCGAAGATAAATCAAAGTTGTAATAATAGTTATAATGTAACATATGCAAGTGCTTAATTTTGAAGGAG TAAATACCATAAGGTAAGTTGAACTTTTGGAGACAAAATTAAATTGTCGTGAGATTATGCATCAGTTACCATTATGATTA AATAACATAATATGTTCAACATCATCAATGTTCAAACAACAGGACTTAGTTAAGTTTAATGCCAAAGCAGAAGTCATGAG CTATTCCATGAATAACGTCCTCAAACATCCTAGGAGAGTAAGTTTTGTGAGAAGCAATAGTAGTTATATCTGCTTATATT CCCATTTATAGAGAAGATGAAGTGAACATACCAGCAACGTTCCCTCAAGGCTATGAGTAGGGGGCGTCACAGCCAGGGCT ATGAAGTATGGAATCAGCACTTTATGCATCTGCATGGTTACAAATACAGTAGTAACAGTTAACTACAGTCAAAATTCCAC AACTGTGTTATAACTCGTAAAAAGCTCTGCATTTCCCTTAGTTTTCTTTGTAGCTTATTTAGAACTCATATAATGCATAC TATGATTTAAAATCATAGGCTCTCAAGGAACATAAACTAGGAAAACAAAAAAACTGATGTAACCCCTAATACTTTATTGA TTATACTTCCGCATGTTCTGAAACACAGTTGGAAAGGATTAAAATTGAAAGAGGAGATGACATAAATATGCAATCTAAAA GTCCGAAAAAAATGAAAGAACTGACCTCCTGGATGACCATCTGATCAGGTGTAAAAACATAGGGAAATAACCAAGGAACT GAGGTTCCAACAATTCCTAACAACAATCCAAGTGTGGCTCCAATTATCACAAGAGACCTCAAAAGCATCCGGGCCTGTTG AGTTG
CDS sequence (LotjaGi3g1v0513600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAGCGGCAGCGGCAGCATCATCGTCGGTCCTCCTCCTTCTCCGTTCACAACCACCGTCTCCGTCTCCGTCACC GTCACACTCTTCTTCTTCTCTCATTTCTTCCATTCTCAAACCTCTTCTTCTTTCTTCAAATGCTCTTTCACCCACTCGCC TTCGACAAATCCATGTTCCACCACTTCATAAACCTCTCTTCGGCTCTTTCTTCTCCACCACCACACCCTCTTCTTCCTCC GTCGCGTTCCCTCACCCACCTCCGCTCGCTGCTGTTTCCGGAAGCTCAGCACAAGAAACAATAGCAGAAGAAGAAGAGGA GGAGGAGGAGGAAGAAGAAGAAGACGGGGTTGATGGCGAATTGGAACAGTTTGATGATGATGAAACAGATTCTGAAGACG ACGAATTGGAAACTGAAGGAGGCGGCGAACTTGAAGATGCCCAAGTGGGTGGTTCAACTTCGTCTCCGTTGGTGGAGAAG AGGAAAGAGAGGTTGAAATTGGAAGTTCCCAGTTTAACTGTGAAGGAAAAGAAAGAGCTAGCTTCATTTGCTCACAGTTT GGGGAAAAAGCTCAAGTCCCAGTTGGTAGGAAAGTCTGGTGTTACCTCCAATCTTGCCACTTCTTTCATTGAGACCCTTG AAGCCAACGAGCTTCTCAAGATTAAAGTACATCGGACTTGTCCGGGTGAGTTAGAAGATGCGGTGAAGCAGTTGGAAGAA TTAACTGGTTCAGTGACTGTTAGTCAGATTGGTCGAACATTGATTATATACAAGCCCAGTCTCACCAAATTGAAGGCAGA AGAAAAGAAAAAACAAGTTCGCAACCTTATTCTGAAAAAACAATTTAAACCAAGAGTGTTTAACAAGAGTAAGGAACCAC CCAAATCATCACGGCCAGGTTCAACATGGAAAAGGAGAGACAGTAGGTGA
Protein sequence (LotjaGi3g1v0513600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAAAAASSSVLLLLRSQPPSPSPSPSHSSSSLISSILKPLLLSSNALSPTRLRQIHVPPLHKPLFGSFFSTTTPSSSS VAFPHPPPLAAVSGSSAQETIAEEEEEEEEEEEEDGVDGELEQFDDDETDSEDDELETEGGGELEDAQVGGSTSSPLVEK RKERLKLEVPSLTVKEKKELASFAHSLGKKLKSQLVGKSGVTSNLATSFIETLEANELLKIKVHRTCPGELEDAVKQLEE LTGSVTVSQIGRTLIIYKPSLTKLKAEEKKKQVRNLILKKQFKPRVFNKSKEPPKSSRPGSTWKRRDSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 11 | 306 | 296 | 2.1E-83 | – | |
| PANTHER | 11 | 306 | 296 | 2.1E-83 | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 309 | 291 | - | – | |
| MobiDBLite | 75 | 162 | 88 | - | – | |
| Coils | 94 | 115 | 22 | - | – | |
| MobiDBLite | 100 | 142 | 43 | - | – | |
| ProSiteProfiles | 170 | 269 | 100 | 16.257 | ||
| Gene3D | 171 | 275 | 105 | 9.4E-24 | ||
| SMART | 172 | 258 | 87 | 4.1E-19 | ||
| Pfam | 172 | 258 | 87 | 4.6E-14 | ||
| SUPERFAMILY | 172 | 260 | 89 | 6.67E-18 | ||
| MobiDBLite | 285 | 309 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0513600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…