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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0522300 |
| Transcript ID | LotjaGi3g1v0522300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pathogenesis-related thaumatin family protein; TAIR: AT4G38660.1 Pathogenesis-related thaumatin superfamily protein; Swiss-Prot: sp|P83332|TLP1_PRUPE Thaumatin-like protein 1; TrEMBL-Plants: tr|A0A151TMT3|A0A151TMT3_CAJCA Thaumatin-like protein 1; Found in the gene: LotjaGi3g1v0522300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:93923081..93926013) extracted from Lotus japonicus Gifu genome v1.2.
CGAGCATTACCTTGATGATAACAATTTATTAATTTGTTAATTCAAGGGCATGGGTATCCCTCCTTGTCCTTAGTCCTTGG TAACAGACCTTGACCCATCTCCTTGTGGATTGTGCTGCTTTTTTACCCTGAAATCACTCTTCTTCGTCCTTTTCTATCTA CCCAACTATTTTCCATTCCAAACACTTCCCTTACCCTTTCAAGAATCCCCTACTCCTCCCTCCCACTCTCTAGTAAACAG GGCCCTCTTCCCTCCAATCCACCACCATTCCACCCATATCTTCTCTCCCCCACACTCAATCATTCACATTCTCTCACTCA AAACCTCCCTCCCATTCTCATCAAAACAAGTAACCCATTATCACTACCCAAAAAAACCAAGCTAGCTTCCACTCATGGAT CCCTTAGCCTCCTCTTATTTCATTCTCATTACTCTCCTACTCCTCACTCCCACAGGTAACAAAACCAAAAAATAACCAAC CTCCTTTTCCTCTTTCTCTACCATTCTTCTCACTTGTTGTTGTTTTGCTATTTCAGGTGTCAGAGCTACCACCTTCACCT TCCTCAACAGATGTGACTACACAGTGTGGCCCGGCATTCTCGCAAATGCCGGCAGCTCCCCTCTTGAAAGCACCGGCTTC GAGCTCCCCACCGCCACTTCCCGCACCTTCCAAGCCCCCACCGGCTGGTCCGGCCGCTTCTGGGCCCGAACTGGCTGCAC ATTCGACGCATCAGGCACCGGGTCATGCCTCACCGGCGACTGCGGCTCCGGCCAGGTCGAATGCAACGGCGCCGGAGCAG CCCCACCTGCCACCCTCGCCGAGTTCACACTCGGCACCCTCGGGCAGGACTTCTACGACGTGAGCCTCGTCGACGGGTAC AATCTCCCCATGATCGTGGAAGGCACCGGCGGGTCGGGTATCTGCGCGTCCACCGGGTGCAGTTCGGATCTGAACCGGCA GTGTCCCGCGGAGCTGAAGGCGTCTGATGGCAGCGCGTGTAAGAGCGCGTGTGAGGCTTTTGGCAGCCCGGAGTATTGTT GCAGCGGCGCGTATGGGTCACCGGTGACTTGTAGGCCGTCGATTTACTCGGAGATGTTCAAGTCTGCTTGCCCGAAATCG TATAGCTACGCATACGATGATGCTTCTAGTACTTTTACATGTACTGCTGCAGATTATACGGTTACCTTTTGCCCATCCTC ACCTAGGTAACATTGTTTATACATTGTTTATACGTTTATGCATACCACATTCATTGATTGATGTGCCATGTTAAATTTCC TAGTAGTAGTATTATTTTAATCTAATACTGTTACACTTTAATCATTGTTTATGTTAGATTTTTCTTGTGGAGTGTATTAT TTAGTAGTAGTAACATGTCTCTAGTGTTGAAAAATTCATGTAATGTCATTGTCTTGTGCTTTATTTTATTTGAGTGTCAG ATTTTCTGGTGTCAGAAATACTATGCGGCCAAGGGTGAGCTTGTTAATGCTTATGTTATTCATAGTATATTGATTGTTGG GTGAGTCTTAATGTTGGTTGGTGCTTGGTGATTGTCTTTAGGTTTGGCTAATGGTACCATTAGAGTGAACACTCAATTTT GTCAGTCTTTCGGAAGATTTTTGGGCTTGAGAGTTTGTAGCATGTTTGAATCAACTTGTTTCGCCTTAGAATCAATTTTA AAACCTTCGTTGAAGCTACTCAGAGAAACTTCTCTCTAAAATTAATTTTGACCTTAGAATAAGCTTAGAAGGATTTTGAT AGATGAAAATAATTTTTTGCCTCTTACAAGATTAAAAGTGCATTCAAGGTATATTTGGATCAACTTCTATTTTCATGGAA TCAATTTTACCCAGTAGAAGGTACTCAAACAAGTTTCTTCCCAAAATTGTTTATGTATTAAGCCTTTTTTTTTCTGTAGA GACTATAGTTACTGATCATTTTTTATCATCTGGGAACCAGTTTGAGATTTTAATTATTCTAATGTTACATATGCACACAT ATTTGTGTCTTCACTCAATACTGGTATTATTGTCTATTGCATTGGATATCTTACCGCCAGAAAATCTTTAGACATTTTTC TGTTTGAGAAAATAATATTGATTATGTCAATGTTTGGATTTTGCAGTCAGAAATCTTCACGAGATGCTAACCCAGTGACC TCAACCACGCCACAACAAGGGTCAGGGACAGGGATAGGAACCGGGATTGGGACAGGAACAGGGACCAATGGGGGTGTGGT ATACACTGGTCCAGACACCGGTTTAGGGAACTCAGTTCCCGGAACAGGGTCTGGGTTAGGTTCAGGATCAGGATCAGGAT CCGGAGGAGAGACCATGCTGGCAGATGGGTCATATCTAGCTGGTTTAGCCATGGGAGATTCCCCAAGAACAGCTTTAATA TCTGCTTTTGTCTACCTTGCTAGCTTTTTGCTTATTCTCTTGTTGCTTTAGCAGGTTATCATCTTGACTTTTTTTGATTG AGACTAGGGTATCAACCACCGAAATGTAGTGACTAAATCCTCTCGTTGCGAGTGTATCATGGTGGCTTTTAGTTTGTTAA GTGTAAATGGGTCTTTAGATTTGCGGGTTTTGATGGGTTCATGAATTTTGGCTTTTGCCACTGAAGCTGGCAGATTCTTC TTCCTGATTGTAAACCACCCACTTCAAGATTCGCTTAAAAAAATTATTCCATGTTTCATTCGTTTAAAGTGTTGTTATTT TATGTATTAATCTTGGGAGTGTTTGTGAGAATTATTTCCAAAATATGTAGTTGGAAATATGTTTGTATTAATTGTTATAG GTATTAATGTTTGAGACTATATCAATATGTTGATATTGGTTCAGTGGTTAGACAATGTGCTTTTTATCTCCATGTGCAAG GTTCGAAACCTGCTGGCTGCGTTTTTCTTATTAATTAATTTTAATTTGAATTA
CDS sequence (LotjaGi3g1v0522300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCCTTAGCCTCCTCTTATTTCATTCTCATTACTCTCCTACTCCTCACTCCCACAGGTGTCAGAGCTACCACCTT CACCTTCCTCAACAGATGTGACTACACAGTGTGGCCCGGCATTCTCGCAAATGCCGGCAGCTCCCCTCTTGAAAGCACCG GCTTCGAGCTCCCCACCGCCACTTCCCGCACCTTCCAAGCCCCCACCGGCTGGTCCGGCCGCTTCTGGGCCCGAACTGGC TGCACATTCGACGCATCAGGCACCGGGTCATGCCTCACCGGCGACTGCGGCTCCGGCCAGGTCGAATGCAACGGCGCCGG AGCAGCCCCACCTGCCACCCTCGCCGAGTTCACACTCGGCACCCTCGGGCAGGACTTCTACGACGTGAGCCTCGTCGACG GGTACAATCTCCCCATGATCGTGGAAGGCACCGGCGGGTCGGGTATCTGCGCGTCCACCGGGTGCAGTTCGGATCTGAAC CGGCAGTGTCCCGCGGAGCTGAAGGCGTCTGATGGCAGCGCGTGTAAGAGCGCGTGTGAGGCTTTTGGCAGCCCGGAGTA TTGTTGCAGCGGCGCGTATGGGTCACCGGTGACTTGTAGGCCGTCGATTTACTCGGAGATGTTCAAGTCTGCTTGCCCGA AATCGTATAGCTACGCATACGATGATGCTTCTAGTACTTTTACATGTACTGCTGCAGATTATACGGTTACCTTTTGCCCA TCCTCACCTAGTCAGAAATCTTCACGAGATGCTAACCCAGTGACCTCAACCACGCCACAACAAGGGTCAGGGACAGGGAT AGGAACCGGGATTGGGACAGGAACAGGGACCAATGGGGGTGTGGTATACACTGGTCCAGACACCGGTTTAGGGAACTCAG TTCCCGGAACAGGGTCTGGGTTAGGTTCAGGATCAGGATCAGGATCCGGAGGAGAGACCATGCTGGCAGATGGGTCATAT CTAGCTGGTTTAGCCATGGGAGATTCCCCAAGAACAGCTTTAATATCTGCTTTTGTCTACCTTGCTAGCTTTTTGCTTAT TCTCTTGTTGCTTTAG
Protein sequence (LotjaGi3g1v0522300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPLASSYFILITLLLLTPTGVRATTFTFLNRCDYTVWPGILANAGSSPLESTGFELPTATSRTFQAPTGWSGRFWARTG CTFDASGTGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTLGQDFYDVSLVDGYNLPMIVEGTGGSGICASTGCSSDLN RQCPAELKASDGSACKSACEAFGSPEYCCSGAYGSPVTCRPSIYSEMFKSACPKSYSYAYDDASSTFTCTAADYTVTFCP SSPSQKSSRDANPVTSTTPQQGSGTGIGTGIGTGTGTNGGVVYTGPDTGLGNSVPGTGSGLGSGSGSGSGGETMLADGSY LAGLAMGDSPRTALISAFVYLASFLLILLLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 4 | 17 | 14 | - | – | |
| PANTHER | 9 | 336 | 328 | 3.7E-159 | ||
| PANTHER | 9 | 336 | 328 | 3.7E-159 | – | |
| Phobius | 18 | 24 | 7 | - | – | |
| ProSiteProfiles | 24 | 240 | 217 | 45.178 | ||
| Gene3D | 25 | 240 | 216 | 6.6E-94 | ||
| SUPERFAMILY | 25 | 241 | 217 | 3.01E-83 | ||
| Phobius | 25 | 332 | 308 | - | – | |
| CDD | 26 | 239 | 214 | 5.77941E-120 | – | |
| PRINTS | 26 | 38 | 13 | 5.2E-19 | ||
| SMART | 27 | 240 | 214 | 2.9E-124 | ||
| Pfam | 31 | 240 | 210 | 2.3E-83 | ||
| PRINTS | 74 | 85 | 12 | 5.2E-19 | ||
| ProSitePatterns | 87 | 103 | 17 | - | ||
| PRINTS | 87 | 116 | 30 | 5.2E-19 | ||
| PRINTS | 125 | 141 | 17 | 5.2E-19 | ||
| PRINTS | 230 | 239 | 10 | 5.2E-19 | ||
| MobiDBLite | 240 | 282 | 43 | - | – | |
| MobiDBLite | 240 | 310 | 71 | - | – | |
| MobiDBLite | 290 | 310 | 21 | - | – | |
| TMHMM | 333 | 350 | 18 | - | – | |
| Phobius | 333 | 350 | 18 | - | – | |
| Phobius | 351 | 351 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0522300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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