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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0523600 |
| Transcript ID | LotjaGi3g1v0523600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G21090.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090; TrEMBL-Plants: tr|A0A072UXD1|A0A072UXD1_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0523600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94079935..94082416) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTGAGTTTTTGGTGACCCAAAACAAAATTTGGGCAAAGAGGCCCATAGGTTGAACATTTTGTTATCACTCACTCCAA CTTCTCGTTAACACGATTCTTTTCAAGCATGGTGTTGACCCACATCGGTCTCACCACAAACCACCGTCACTGGCGGCCGG AGGTGTTCTAACGAATCCACATTCCGATCAACTCCACCGCCGTCACAGAAGCAGATGATGAAGTTCTTCAACTCACACTC ACACTCTTCACATTCGCATGCTCTTTCTCTCCAATGCCAATGCCACCTTCCTCATTCCGAACCCCAAACTTCAACCGCAC CCTCAAACACACAACCGATCTCTGCATCGTCAAGCCCATCCTCTCTCCCCGTACCCACCTCTCCGACGCTGTTTCTTCTC TCGACGTTTTGCACCCCAACGGCATTCGCTTACCCACTCGCGTTCTCGCCAATCTCCTCCGCCGCTGCTCCGACGCCAAG TCCCACCGTGACGGGAAGCTGGTCCACCTCCACTTGAAGCTCACTGGTTACAAACACCCCACCACGCTTTTAGCTAACCA TTTGATTCATATGTATTTTAGTTGCGGCGATCATGTTCGTGCACGCGAGGTGTTCGATAAAATGGGTGTTAGAAATTTGT ATTCCTGGAACAATGTGCTTTCTGGGTATGCTAAGTTGGGGATGATGGAGCAAGCTAGGAGCTTGTTTTGTCGAATGCCG GACAAGGATTGCGTGTCGTGGAATACGATGGTGGTCGGGTTTGCGCACAGTGGGAGATTCGAGGAGGCTTTGAGGTTTTA TGGACAGTTGAGGAGATTGTCTATTGGGTACAATGTGTATTCCTTTGCTGGTGTTTTGATTGTTTGTGTGAAATTGAAAG AGGTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTGGTTATTGGATTGCTGTCCCATGTGGTTGTTTCCAGCTCGATT GTTGATGCTTATGTAAAGTGTGGAAGGATGGAAGATGCAAGGAGATTGTTTGATGAAATGCCCCTGAGGGATATTCCTGC GTGGACGATCTTGGTTTCAGGATATGCCATGTGGGGGGACATGGAATCAGCTGCAGAAATGTTTAGTCAGATGCCTTGGA GAAATTCCTACTCGTGGACATCTTTGATTGGCGGCTATGCTAGGAATGGTCTGGGCCATGAAGCACTTGGAGTGTTTAGA AAGATGATCAAGCACCAAGTTAGACCTGATCAATTTACATTCAGTAGTTGCTTCTTTGCTTGTGCGACTATTGCTTCCCT AAAGCATGGTAAGGAATTACATGCGTTTTTGGTGAGAAATAACATCAGAACTAATACTATGGTTGTTAGTGCTATTGTTG ATATGTATTCGAAATGTGGAAGCTTGGAAACAGCCTGGCGAGTATTTAATTTAGTTGGAAATAAGCAAGATGTAGTGTTG TGGAATACGATGATATCAGCGTTGGCTCACCATGGCTTTGGTACAGAAGCAATGGTGATGCTAAATGATATGATAAGATC AGGAGTGGAGCCCAATAGGGCCACTTTTGTTGTCCTACTAAATGCTTGTAGTCTTTCAGGTCTTGTTCAGGAAGGACTTC AGTTTTTCAAGTTCATGACTAGTGAGTTTGGTGTTGTCCCAGATCAAGAACACTATGCTTGCCTAACTGATCTTTTGGTC CGAGCTGGATATTTTGATGAATCGGTGAAGGGCTTGCAGATTATGGATTGTACACTTGGTTGGAATTCTTTGCTTGGTGT ATGTAGAACACGCGGAAATATAGATCCTGGAAGAGAAGTAGTTGAATTCCTTATTAAATTGCAGCCTCAGTCGTCCGCTG CATATTTATTATTTTCCAGTATATACGCCGCTCTTCTGAAATGGGGATTGGTTGACAATGCAAGACCCATTGATGAAATA CGTGTGAGGAAAGATCAGGCCATGAGTTGGATTGAGATTGAGAATAAGGTTCATGCTTTCACTGTATCAGATGGATCACA CCCTCTAAAGGAAACAATATACTCATCTTTAGGGTATTTGAGTAGCCAGATGCAGGGCAAAGCCCCTTTACTAACTTTGG AATGTGAAACTTAGAGAAATCTTTTTTTTTTCCAGTAGGTCATTTTTTGTAGAGAGAGCAGGAATATAGTTTCCATTAGC TAAGTTACATTTTCCTTTTTTTTACTTTCTTTTTACTGATTCCAGATTCTGCAGAGTTGAATTTCCACATTGGTATACTT ATAAGATGTTACCTCCAGAAAAAAAAACTGAGGAGGAATGAGAAAAGAGTTGTGGGAAGAACCAAAGAAGATAGTTTTTT TTCTTCATGAAAGATAGATTTCTTGCTTCATTTTTTGTACCCACTGTTTTGTTTGTATTTCTCACCAATGGAATAAGATA AGAAATTTTCTCCTGCATCTGTGTCTGTAATATTTATTGGAAACACATTCTTTGCTAATATGATTTGGAATGTTTGCTGT AG
CDS sequence (LotjaGi3g1v0523600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATGCCACCTTCCTCATTCCGAACCCCAAACTTCAACCGCACCCTCAAACACACAACCGATCTCTGCATCGTCAA GCCCATCCTCTCTCCCCGTACCCACCTCTCCGACGCTGTTTCTTCTCTCGACGTTTTGCACCCCAACGGCATTCGCTTAC CCACTCGCGTTCTCGCCAATCTCCTCCGCCGCTGCTCCGACGCCAAGTCCCACCGTGACGGGAAGCTGGTCCACCTCCAC TTGAAGCTCACTGGTTACAAACACCCCACCACGCTTTTAGCTAACCATTTGATTCATATGTATTTTAGTTGCGGCGATCA TGTTCGTGCACGCGAGGTGTTCGATAAAATGGGTGTTAGAAATTTGTATTCCTGGAACAATGTGCTTTCTGGGTATGCTA AGTTGGGGATGATGGAGCAAGCTAGGAGCTTGTTTTGTCGAATGCCGGACAAGGATTGCGTGTCGTGGAATACGATGGTG GTCGGGTTTGCGCACAGTGGGAGATTCGAGGAGGCTTTGAGGTTTTATGGACAGTTGAGGAGATTGTCTATTGGGTACAA TGTGTATTCCTTTGCTGGTGTTTTGATTGTTTGTGTGAAATTGAAAGAGGTTGAACTTTGTAGGCAGATCCATGGGCAGG TTTTGGTTATTGGATTGCTGTCCCATGTGGTTGTTTCCAGCTCGATTGTTGATGCTTATGTAAAGTGTGGAAGGATGGAA GATGCAAGGAGATTGTTTGATGAAATGCCCCTGAGGGATATTCCTGCGTGGACGATCTTGGTTTCAGGATATGCCATGTG GGGGGACATGGAATCAGCTGCAGAAATGTTTAGTCAGATGCCTTGGAGAAATTCCTACTCGTGGACATCTTTGATTGGCG GCTATGCTAGGAATGGTCTGGGCCATGAAGCACTTGGAGTGTTTAGAAAGATGATCAAGCACCAAGTTAGACCTGATCAA TTTACATTCAGTAGTTGCTTCTTTGCTTGTGCGACTATTGCTTCCCTAAAGCATGGTAAGGAATTACATGCGTTTTTGGT GAGAAATAACATCAGAACTAATACTATGGTTGTTAGTGCTATTGTTGATATGTATTCGAAATGTGGAAGCTTGGAAACAG CCTGGCGAGTATTTAATTTAGTTGGAAATAAGCAAGATGTAGTGTTGTGGAATACGATGATATCAGCGTTGGCTCACCAT GGCTTTGGTACAGAAGCAATGGTGATGCTAAATGATATGATAAGATCAGGAGTGGAGCCCAATAGGGCCACTTTTGTTGT CCTACTAAATGCTTGTAGTCTTTCAGGTCTTGTTCAGGAAGGACTTCAGTTTTTCAAGTTCATGACTAGTGAGTTTGGTG TTGTCCCAGATCAAGAACACTATGCTTGCCTAACTGATCTTTTGGTCCGAGCTGGATATTTTGATGAATCGGTGAAGGGC TTGCAGATTATGGATTGTACACTTGGTTGGAATTCTTTGCTTGGTGTATGTAGAACACGCGGAAATATAGATCCTGGAAG AGAAGTAGTTGAATTCCTTATTAAATTGCAGCCTCAGTCGTCCGCTGCATATTTATTATTTTCCAGTATATACGCCGCTC TTCTGAAATGGGGATTGGTTGACAATGCAAGACCCATTGATGAAATACGTGTGAGGAAAGATCAGGCCATGAGTTGGATT GAGATTGAGAATAAGGTTCATGCTTTCACTGTATCAGATGGATCACACCCTCTAAAGGAAACAATATACTCATCTTTAGG GTATTTGAGTAGCCAGATGCAGGGCAAAGCCCCTTTACTAACTTTGGAATGTGAAACTTAG
Protein sequence (LotjaGi3g1v0523600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPMPPSSFRTPNFNRTLKHTTDLCIVKPILSPRTHLSDAVSSLDVLHPNGIRLPTRVLANLLRRCSDAKSHRDGKLVHLH LKLTGYKHPTTLLANHLIHMYFSCGDHVRAREVFDKMGVRNLYSWNNVLSGYAKLGMMEQARSLFCRMPDKDCVSWNTMV VGFAHSGRFEEALRFYGQLRRLSIGYNVYSFAGVLIVCVKLKEVELCRQIHGQVLVIGLLSHVVVSSSIVDAYVKCGRME DARRLFDEMPLRDIPAWTILVSGYAMWGDMESAAEMFSQMPWRNSYSWTSLIGGYARNGLGHEALGVFRKMIKHQVRPDQ FTFSSCFFACATIASLKHGKELHAFLVRNNIRTNTMVVSAIVDMYSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHH GFGTEAMVMLNDMIRSGVEPNRATFVVLLNACSLSGLVQEGLQFFKFMTSEFGVVPDQEHYACLTDLLVRAGYFDESVKG LQIMDCTLGWNSLLGVCRTRGNIDPGREVVEFLIKLQPQSSAAYLLFSSIYAALLKWGLVDNARPIDEIRVRKDQAMSWI EIENKVHAFTVSDGSHPLKETIYSSLGYLSSQMQGKAPLLTLECET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 183 | 183 | - | – | |
| Gene3D | 33 | 153 | 121 | 6.6E-15 | ||
| PANTHER | 43 | 150 | 108 | 1.3E-96 | – | |
| ProSiteProfiles | 90 | 120 | 31 | 6.61 | ||
| Pfam | 95 | 120 | 26 | 0.022 | ||
| ProSiteProfiles | 121 | 155 | 35 | 11.279 | ||
| TIGRFAM | 123 | 154 | 32 | 4.6E-7 | ||
| Pfam | 123 | 153 | 31 | 2.2E-7 | ||
| PANTHER | 132 | 209 | 78 | 1.3E-96 | – | |
| TIGRFAM | 154 | 184 | 31 | 1.6E-5 | ||
| Pfam | 154 | 182 | 29 | 3.4E-5 | ||
| ProSiteProfiles | 156 | 186 | 31 | 6.982 | ||
| Gene3D | 157 | 282 | 126 | 8.9E-22 | ||
| Phobius | 184 | 202 | 19 | - | – | |
| ProSiteProfiles | 187 | 221 | 35 | 5.393 | ||
| PANTHER | 191 | 280 | 90 | 1.3E-96 | – | |
| Phobius | 203 | 213 | 11 | - | – | |
| Phobius | 214 | 234 | 21 | - | – | |
| ProSiteProfiles | 222 | 256 | 35 | 10.052 | ||
| Pfam | 227 | 252 | 26 | 2.8E-5 | ||
| TIGRFAM | 228 | 254 | 27 | 2.2E-5 | ||
| Phobius | 235 | 521 | 287 | - | – | |
| TIGRFAM | 256 | 280 | 25 | 3.0E-4 | ||
| Pfam | 256 | 283 | 28 | 1.3E-4 | ||
| ProSiteProfiles | 257 | 283 | 27 | 5.448 | ||
| Gene3D | 283 | 383 | 101 | 2.3E-20 | ||
| Pfam | 284 | 331 | 48 | 4.7E-10 | ||
| ProSiteProfiles | 284 | 318 | 35 | 12.057 | ||
| PANTHER | 286 | 341 | 56 | 1.3E-96 | – | |
| TIGRFAM | 286 | 319 | 34 | 5.0E-7 | ||
| ProSiteProfiles | 319 | 353 | 35 | 5.404 | ||
| PANTHER | 329 | 544 | 216 | 1.3E-96 | – | |
| ProSiteProfiles | 354 | 384 | 31 | 6.96 | ||
| Gene3D | 384 | 537 | 154 | 2.5E-25 | ||
| Pfam | 386 | 432 | 47 | 4.0E-13 | ||
| ProSiteProfiles | 386 | 420 | 35 | 11.805 | ||
| TIGRFAM | 388 | 421 | 34 | 1.9E-7 | ||
| ProSiteProfiles | 421 | 456 | 36 | 7.991 | ||
| TIGRFAM | 424 | 457 | 34 | 0.0031 | ||
| ProSiteProfiles | 457 | 487 | 31 | 5.327 | ||
| Phobius | 522 | 540 | 19 | - | – | |
| Phobius | 541 | 606 | 66 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0523600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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