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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0525700 |
| Transcript ID | LotjaGi3g1v0525700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein, putative; TAIR: AT5G48655.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9QZS2|RNF4_MOUSE E3 ubiquitin-protein ligase RNF4; TrEMBL-Plants: tr|I1LIV9|I1LIV9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0525700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94241069..94245751) extracted from Lotus japonicus Gifu genome v1.2.
TGTCCTTTTCTTCTATCTCTGTCTCCTCTAGCTCACTTCGTTCTTCCCTTCCCTCTCACCGGCTAACCGGCTAACACCTT TCTCTCTCTCATAATCTTCCCTTTTCCGTTCCCAACCAACACCAAACCAAACCCTTTTAACTTAACTTATCATCACAATT CACAACCCCTCTCTCTCTCGCTCGCTCGCTCATCGTTCTTCTCCACCAACAACGGTTCGTTCCCTTTTCTCTCTTAGGGT TTCCATCTCTCTCTCTTGATTCATTCATTCATTGATTCTTCTGTGTTTCGCTTCATCATCCTTTGATCATAACCCGATCA TCCCTCTCTTCTCAATCTCTTCCTCAAGCAGTTCCGTTCTGCTTTGATCCTTTTTTTTTTGCTGATTTTAGTTTCATCAA CTTTGAATTTGTGCTGTTTGAATATAATCTGAATTCAATACATCGATTGATGATTTTTAGGGTTTTATAATTTCTAGCAC TGTTTTTACTTTTGTTAGTAGCTTAGTCTTCAATTCTGTTATCACTGTAGGGTTGTGCAAATTCAAATGCTGGCATTGTG CTTTTGATTTTTTTGATTTTCTGAGGTTTTCGATTTATCGTTTTCGTGCTTGTGTTCTTCTGGCCTCGAATTTTACTGTA CTGTGATTATTATGCAGTGTAGACTTGTGTCGTTCCGTTTGCTGTGAGGATTGAAATTTTTACACTGGGCTTTTCAGGTT GTGACTTGGTTGGATAAGGGGAATTTGAACCAAGATGAGCTCTCGGGCTGGCAAGGGGCCTGCTGTGAAAAGCTACCGAC GGAAGAAGTGTTTAATTGATCTCAACCTTGCTCCTGCGGTTACTGAGAATCGCGAGCAGGAAGGACCTTCCAGTCAGGTG GTGACTCAAGAAGTTCAAGGTGATCAGCAACCACCGGTTGCACAACCGCCACAGGATGCACTGCCACCAGAGGTTGCACA GCCACCAGAGGTTGCACAGCAGCCACAGGTTGCGCAGCCTCCACTGATTGATGTTGAGGCCATTGATGATGATGATGTTA TTGAATCTAGCCCAAGGGCTTTTGCTGAGGTGAGGTTTATCTTCCCTCTTTGTGTAGTCTTTTTTTCTGTTATGGTTTCA GTCTACTAGTTTTGCTTGTTGGAAATTAGTCTCATCTGCTCGTTTGTGGTTCATCCCAGGCTAAAAACAATTCAAGAAGA AATCGTGCAAGGGCTGTAGTTGATTTGGAGTCAGGTAAAATTTATTATTCCTTTCCTCTACTTTGGTAACACTAGTAAAC TCAGCTATTTCCCAACTACCTATTCCAGATTTTTAAATTGAAGCCCTATGATCCAAATTTTAGTGTAAGGTTGGGTAAGT GACTGGCATACATGTAATCCATTCTTCATGTGGCTCGAAATAAAGCCAGGGTTTAGAATTTGCTCAAGCAATGAATGGTG AATTTGAACTCTGTATTATACCATCTCTTATTTTAAAAAAAAGTTGCAAGTATGTGATATTGTACTGAGTATAATGTTCA TTCTGCTTTTATCGTTTGTTTGATGCTAGTTTACTGGCACTATACATTTGGTATAGGGACTTTATGTTCTGCTTTACATG TCAATTGAAGTTGTCTTTTTCTGATATCATCTTTACTCTTTTATTATTGATTATAAATCTAATATGGTTTCCAACTTCTC TGTCATTCATGATTATTGCAGATGATCAGACCAGGGTGACCAACAATAATCGCAACAAACGCAGAAGAGAAACCTCTAAC CAGACAATCATTAATTGCGATCTCTTCATAAATTTGGAAGGCACTAGCAATTCAATGGTAAAAGAATCCTCTGCTGCACT GCTTATGTTAATAAATTAGCTGCCAGATCTGTTGTAATTACATTTTCATCCTTCTCATAAATAATTTGATTTTACCTCTA TCATTTGTTTTTTACTGAATGCAAATTTTTAAATATCAGTTACAAGAATTTATGAAGTTCCTAAATTGCATTTTTTTAAT CTTTTGCTAGTAATATTGGAATTGGTGCAAACTCTGCTGCTTAATATTGCTGTGTGTTGGTGTTGGTGGAGCAGTTCTTT ATTTCAAGCATCACTTGATTTCCTTCATCCATATTTTGTAATGTGCAACAAGATACTTGCCACCAGAGAATCAATATTTG TCAATGCTTTTGACAAAATGCTAGTTTTTTGTGCCTATTTTAATTCTCCTCCTGTTTGCTCACTTTGCTGTACTGCAGAA GTCCTTGTAGTTATTTTGTTGTAGGCCCTATATTATTAAGTTTTTTACCCATTGTCATTTGATTGCTGCACCTATCAAAT AACGACATCATCATTGATGACCATGAAGGATTAATGGACTTCAAATTTCTGACTTGATTTGGATATCCCTTTTGCAGAGG GAAACTGTTAAAAAGCCACCTGAACCTCCGAAGGAGCCTGTCTTTAGCTGCCCAATATGTATGGGTCCTTTGGTAGAAGA AATGTCAACAAGGTGCGGTCATATTTTTTGCAAGGCTTGCATCAAGGCTGCTATAAGTGCCCAGAATAAATGTCCTACTT GTAGAAAAAAGGTTACTGTGAAAGAGCTTATAAGAGTGTTTCTCCCATCTACTAACTAAAGGTATGGCCAAAACCACTTA TGATTGTTGATGTTGGCTGAAGTGTTCTCTTTTTGTCACATTGATGTAATTAGTAGTAGGTCTAGAAAGTGTCGCCATTG CTTGCATTTGTGAACTTCTTTTGTGTGTTTCAATTAATATTGCTTTGCCTTTATTGTTATCAAGATTAAAATATGGTCCC AAATACTTGTGTATATAAAATTAAGGTGTAGCAAGTAGAGAGGAAATGAGATATCTGACAGTTAGTGTGCTGGAGATTTC AATCAGCATAGGAAACGCAAGTAAAGAACATGTGATAATACGTGGATGTATGCATTTTATGCTATGATGTACAAGTACTT CTAAACGTTTGCTGTACCTATTGTAGTCATTAATCTGGTTCCTGTACTTGTTTGAACATATGGTGCCCTATGCTCATGTA TCTCTCGAGTACAAGTTGTATGTATAAAACAAGCTGTTACTAAGTCGTTTAGTTTGCTGCTAAATGAAACAACCTGCTTA ATTTAGTTGATATTGTGTGAGATTATATCTATCTCATAGTTCATTTCTTTTTTATATATATCTATAATTCTATATGATAT ATCCTGCTGCACCTTTGTACAACTTAAGTCAAGGCCTTAGTATCAAAATTCTTGCATTCCTTCCATTGTTAGAAAGTCAC ACACAGAAATAGAAGAAACTGTTTTCATTAGTCTTCCGTTATAAATCATCTGTAAATCTTTTTACTGAAGGGTACTCTTT TGCCATGCTGCAGGTTCCCATGTAAGCTGTGTTGAGGAGGATGGAGAACGGAAGAAACATTGTACTCTGGCATTTTGGTT TCTCTGATTCTCTTATTTAATTTATCATATCCAAAGATACTTGGTAGATAGATATAAATAACTTGCTCAGTATTTTCCCC TTTCATGCATGAACCATCAGTCCTTTTTTTAGTGATAGTACCGGCCAGAGCGGCCAGTCATGACTCATTCTTGATTCTGG GGATTAATGTATGCATATTTATCCCTCATGAGTTTATTGATAGGGTTCCTTCCCTTCCACCCTTAGGGAAGCTAGATACC ATTTAGTTTTATGAAAAAATTGTTGCAAATTGTTCTGCTGTACTCATGTTTAGTTTCATTTACTTGCTGATAATGTTTGT TAGTCAGTGGATGAATCTTTGTAGATACTGAAGTAGTCTCGCGATTATTTTGAAAACTTATTAAATTTTGAAGTCTGATT CTGTTTTTTTTTTTTAAGTAGTTTGTGGGGGAAATTAAAATAATAAAAAATTTAACAATTGTAACCAAATTAAAATTATA GTTACTGTACATGTATTTTCATATGAAAAGTCATTTCTTCAAAGCTAGCAAATGAGTCGTGAAATAACAGGTCTTGTTTT TTTTTTTTTTTTTTTTTTTTGCATCGATCTGCCGCTAGTGCAAATTTTTACTAATATATATTTTTTTAAAACATCGTTCA TGGGATTGCCTTATAACTTGAATAGAATTGAGGCTATTGACAGATGATAAGGTGGTTGTGAGTTGTGACGGATGTGGATG CTCAGATTTTGGAGGTCTGTAGCATTCTAGAGGTAACGAAAGTGATTTCCATGTTAATAGTGCATTATTGAGAATTAGGC CAAAGGGATCTAGACATAATTTAGCTCATTTCTCAGAGATCAATCATGTTGTCTTTCGTTTTTTTTTGGTCAAATCATGT TGTCTTTCGTTTAGGTGCTCTTAAATTGCTTGGGCCTAATGGTCTTGAGCCCATTTCTTTCATACGCATTGTGATACTAT TGGATGGTGAGTCGCTAGTGATACTATCTAGTCTACGTGAGCGCAGTGTCATTTTTCTAGTTTCGGAGAATCTCGTTCAT GTTTGGTTGGGATAACATTAAAATTTTCTTTTTAACCTTGATAGCTTAGTTGTCATGTACGCGTCCCCGTGGAATAGCTC AAGTGGTAGGAGCTGAGAGACATATGGATTGTGTAGGGGAGGTCTCAGAATCGATTCCTGGTGGGTGCAATTTATTTTTC CAATGTATAAAAATAAATTGCATGTACGCTAAATCCATCATTT
CDS sequence (LotjaGi3g1v0525700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTCTCGGGCTGGCAAGGGGCCTGCTGTGAAAAGCTACCGACGGAAGAAGTGTTTAATTGATCTCAACCTTGCTCC TGCGGTTACTGAGAATCGCGAGCAGGAAGGACCTTCCAGTCAGGTGGTGACTCAAGAAGTTCAAGGTGATCAGCAACCAC CGGTTGCACAACCGCCACAGGATGCACTGCCACCAGAGGTTGCACAGCCACCAGAGGTTGCACAGCAGCCACAGGTTGCG CAGCCTCCACTGATTGATGTTGAGGCCATTGATGATGATGATGTTATTGAATCTAGCCCAAGGGCTTTTGCTGAGGCTAA AAACAATTCAAGAAGAAATCGTGCAAGGGCTGTAGTTGATTTGGAGTCAGATGATCAGACCAGGGTGACCAACAATAATC GCAACAAACGCAGAAGAGAAACCTCTAACCAGACAATCATTAATTGCGATCTCTTCATAAATTTGGAAGGCACTAGCAAT TCAATGAGGGAAACTGTTAAAAAGCCACCTGAACCTCCGAAGGAGCCTGTCTTTAGCTGCCCAATATGTATGGGTCCTTT GGTAGAAGAAATGTCAACAAGGTGCGGTCATATTTTTTGCAAGGCTTGCATCAAGGCTGCTATAAGTGCCCAGAATAAAT GTCCTACTTGTAGAAAAAAGGTTACTGTGAAAGAGCTTATAAGAGTGTTTCTCCCATCTACTAACTAA
Protein sequence (LotjaGi3g1v0525700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSRAGKGPAVKSYRRKKCLIDLNLAPAVTENREQEGPSSQVVTQEVQGDQQPPVAQPPQDALPPEVAQPPEVAQQPQVA QPPLIDVEAIDDDDVIESSPRAFAEAKNNSRRNRARAVVDLESDDQTRVTNNNRNKRRRETSNQTIINCDLFINLEGTSN SMRETVKKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQNKCPTCRKKVTVKELIRVFLPSTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 234 | 224 | 1.7E-70 | – | |
| PANTHER | 11 | 234 | 224 | 1.7E-70 | – | |
| MobiDBLite | 28 | 82 | 55 | - | – | |
| MobiDBLite | 33 | 55 | 23 | - | – | |
| Gene3D | 153 | 233 | 81 | 8.7E-17 | ||
| SUPERFAMILY | 179 | 224 | 46 | 7.95E-17 | – | |
| Pfam | 180 | 217 | 38 | 4.3E-10 | – | |
| ProSiteProfiles | 180 | 218 | 39 | 12.755 | ||
| SMART | 180 | 217 | 38 | 1.2E-5 | ||
| ProSitePatterns | 195 | 204 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0525700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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