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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0526100 |
| Transcript ID | LotjaGi3g1v0526100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G09820.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820; TrEMBL-Plants: tr|I1LIV3|I1LIV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0526100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94272140..94275187) extracted from Lotus japonicus Gifu genome v1.2.
ATTGGACACCTTTAACCATCACCTAATAGCCTACATTGTCACCGTCACCATCATTTAGTACACTCCATAACAACCGTCAC CACATTTGCACACTCACAACTACCCAACGCCACCCAATACAAATACGCAACACCCATAACTTAGCCAAAATACCATGAAG CCAGCTTGTTGCACTATTCCAGTCTAGAGTTAAAGCCTTGTAGGGGGATCGATCGCCATCGAGGTCGCATTAGCTCGAAG CCTGCTTTCAATTCTGGGTACGTGGAAACTGCATCTTTGATCTCTGACAATTGTGTTTTTGCCTGTCTCTTCATCCTTTC TCTCGCGCATTTCATCGAACACCTAACAATCAACCAATTGCACAGACCCCACCATCAGCTATGGTAGTCACTGTTTATTA ACCAACATTTGAAGACAAGGATTCTGGGAGCAATGACTATAGATAAACTTGCTCGATCTGTACAAGGTGATAAAGCTCTT TTTGCTTGTAACTTGTAAATTTGCATACAATTCTTGCAATGAAGAGGCTTTTAGGGTGAATTTGGATAAATAGCCTAATT AAGCGCTTATGGCAATATGCTCTTATCGCATAATTGCTTATTCATAAGCTAATTTGTGAAACTTATTGAAATAAGCTGAA AACAGGTTATGGATAAGCATAAGCTCTAATTCACAAGCTAATATGAACAACTTATGAAAATAAGCTCAAAACAGCTTATT GGTGGTCATAAGCTATTTACATAAGCTCTCCCTATAAGATCCAATGAGCTCTTCCAAATGGGGTCTCACTCTTTTTTCAA ATTCCATATGTATGATTGTTATTACATTTTTCAAATTGTTAGCCTCTGTTTGTATCAGTTTTTGGCAATATAATGTCCTT AACTACTCTCGTAACTTTTAATCTCATGTGTCTGTTTTTTACTCCCTGATTAGTTCAATTACAAGCATATTTAAAATCTG GTTTCTCTTAAGTATTTTTATTCTCTTTACCTTCAATCTGTAAAAAGGGAAAATGTTTATTTATTAATTAATGTCCACTG AATTCATGTAAATGCATTCTTTTAGGGATGAAAGATCTATGTCTCATTATCAGCAAATAATTTAGTTATCCTGCTCGTGC TCCAATTTCTGCTTACAGGTCCAATCTCCCAGTTATTGGGCATATCTACAATTTCAGAGCTGTTGAGTAAACGGCACTGG TCAGGGCTCAAAACCCATCTTTGTGCGACCAAACCTGCAATAGTTCTTGACCAATTGCTAAATGCTGGAGTTGATTCAGA ACTTGTTTCTAGGTTCTTTCGATGGTCTCAGAAAGAGTTCAATTTTTCATATGATCTTGAAGCAACTGGCAAAGTTTTGC ATTTTCTGACAAATTCAAAAAGGTACTCTAAAGTCAGGTCATTTTTGGATAACCTTGTTAAGAAGAAGAAACATACAGTT TCTTCTGTTTTTCACTACCTTTTGTTGGGCAGTAATCGATCTTGTGCAAATGCTCTAATAATTGATATGTTGGTCCTAGC TTATGTTAGAAATTTAGAAGTGCACTCTGCTTGTGAAGCATTTAGGCGAGCTCAAGATTATGGATTTAAATTATCATTGA CTTCATGCAATCCGTTGTTGAGTTCTTTGGTGAAGGAGAATAACATTGGTGAAATGGAGTTTGTGTACAAGGAGATGATA AAGAGAAGAATTCAACCTAACTTGACCACATTCAACATTTTCATTAATGGTCTTTGTAAAGCTGGTAAGTTGAATAAGGC AGAGGATGTTATTGAAGACATGAAGGCCTGGGGAATTTCCCCAAATGTAGTTACTTATAATACTCTTGTTGATGGGCATT GCAAGAAAGGTAGTGCTGGAAAAATGTACAAAGCTGATGCTATTTTGAAGGAAATGCTTGCGAATAAAGTTTGTCCAAAT GAGATTACCTTTAACACTCTTATTGATGGGTTTTGTAAGGATGAGAATGTATTGGCTGCGAAGAAGGCTTTTGAAGAGAT GCAAAGGCAGGGACTAAAACCTAATTTAGTTACTTATAACTCACTGATAAATGGTCTATCTAGTAATGGGAAGATAGATG AGGCTATTGCTTTTTGGGACAAGATGGTTGACTTGGGCTTGAAGCCAAATATTGTTACTTATAATGCTCTTATTAATGGG TTTTGCAAGAAGAAAATGATGAAGGAAGCAACAAAACTCTTTGATGATATAACTAAGCAAGATTTGGTTCCCAATGCAAT AACATTCAATACCTTGATTGATGCGTACTGCAAGGACGGGATGATGGAGGAAGGACTGGCGCTATTTAGATCAATGCCAG ATGAAGGGATTTCTCCTAATGTTTCTACATATAACTGCTTAATTGCAGGCTGGTGCAGAAGCCAGAACACAAGAGCTGCC AATGAGCTTCTCAGTGAAATGGAGAACAAGGGCTTGAAAGGTGATGTTGTAACTTACAACATCTTAGTAGATGGATGGTG CAAAAATGGTGAATCAAGAAAGGCAGAAAAACTACTTAATGAAATGCTCAATGTGGGTGTGAAACCTAATCATGTGACAT ATAATACTTTGATGGATGGCTATTGTGAGCAGGGAAATCTCAAGGCGGCGTTGAATGTGAGGGAACGGATGGAGAAAGAT AGGAAGAGGGCAAATGTTGTGACATATAATGTGTTGATTAAAGGATTTTGTAAAACAGGGAAGCTAGAGGCCGCAAATGG CCTTCTTAATGAGATGTTGGAAAAGGGTTTGAATCCAAATCGTACTACCTATGATATTGTAAGACTGGAAATGTTGGAGA AGGGTTTTATTCCAGACATTGAAGGGCACTTGTATAATATCTCTAGCATGTCTTAACATGAACTTGATGTGCTAGATGGA ATTTTTGGTATCAATGTAATTATTTGTTGTTTAGAGTTCGATCCGGCTCCTTACTAGACCTCTCGCATCGCGGGAGCTTT ACTACCATTTTGTAGAGTTGTTTATTGTTGGCATTACTATCACCTGAGTAAAATGTAAATTATTTGCATATGCTGTTCTT AAGTTGAG
CDS sequence (LotjaGi3g1v0526100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTATAGATAAACTTGCTCGATCTGTACAAGGTCCAATCTCCCAGTTATTGGGCATATCTACAATTTCAGAGCTGTT GAGTAAACGGCACTGGTCAGGGCTCAAAACCCATCTTTGTGCGACCAAACCTGCAATAGTTCTTGACCAATTGCTAAATG CTGGAGTTGATTCAGAACTTGTTTCTAGGTTCTTTCGATGGTCTCAGAAAGAGTTCAATTTTTCATATGATCTTGAAGCA ACTGGCAAAGTTTTGCATTTTCTGACAAATTCAAAAAGGTACTCTAAAGTCAGGTCATTTTTGGATAACCTTGTTAAGAA GAAGAAACATACAGTTTCTTCTGTTTTTCACTACCTTTTGTTGGGCAGTAATCGATCTTGTGCAAATGCTCTAATAATTG ATATGTTGGTCCTAGCTTATGTTAGAAATTTAGAAGTGCACTCTGCTTGTGAAGCATTTAGGCGAGCTCAAGATTATGGA TTTAAATTATCATTGACTTCATGCAATCCGTTGTTGAGTTCTTTGGTGAAGGAGAATAACATTGGTGAAATGGAGTTTGT GTACAAGGAGATGATAAAGAGAAGAATTCAACCTAACTTGACCACATTCAACATTTTCATTAATGGTCTTTGTAAAGCTG GTAAGTTGAATAAGGCAGAGGATGTTATTGAAGACATGAAGGCCTGGGGAATTTCCCCAAATGTAGTTACTTATAATACT CTTGTTGATGGGCATTGCAAGAAAGGTAGTGCTGGAAAAATGTACAAAGCTGATGCTATTTTGAAGGAAATGCTTGCGAA TAAAGTTTGTCCAAATGAGATTACCTTTAACACTCTTATTGATGGGTTTTGTAAGGATGAGAATGTATTGGCTGCGAAGA AGGCTTTTGAAGAGATGCAAAGGCAGGGACTAAAACCTAATTTAGTTACTTATAACTCACTGATAAATGGTCTATCTAGT AATGGGAAGATAGATGAGGCTATTGCTTTTTGGGACAAGATGGTTGACTTGGGCTTGAAGCCAAATATTGTTACTTATAA TGCTCTTATTAATGGGTTTTGCAAGAAGAAAATGATGAAGGAAGCAACAAAACTCTTTGATGATATAACTAAGCAAGATT TGGTTCCCAATGCAATAACATTCAATACCTTGATTGATGCGTACTGCAAGGACGGGATGATGGAGGAAGGACTGGCGCTA TTTAGATCAATGCCAGATGAAGGGATTTCTCCTAATGTTTCTACATATAACTGCTTAATTGCAGGCTGGTGCAGAAGCCA GAACACAAGAGCTGCCAATGAGCTTCTCAGTGAAATGGAGAACAAGGGCTTGAAAGGTGATGTTGTAACTTACAACATCT TAGTAGATGGATGGTGCAAAAATGGTGAATCAAGAAAGGCAGAAAAACTACTTAATGAAATGCTCAATGTGGGTGTGAAA CCTAATCATGTGACATATAATACTTTGATGGATGGCTATTGTGAGCAGGGAAATCTCAAGGCGGCGTTGAATGTGAGGGA ACGGATGGAGAAAGATAGGAAGAGGGCAAATGTTGTGACATATAATGTGTTGATTAAAGGATTTTGTAAAACAGGGAAGC TAGAGGCCGCAAATGGCCTTCTTAATGAGATGTTGGAAAAGGGTTTGAATCCAAATCGTACTACCTATGATATTGTAAGA CTGGAAATGTTGGAGAAGGGTTTTATTCCAGACATTGAAGGGCACTTGTATAATATCTCTAGCATGTCTTAA
Protein sequence (LotjaGi3g1v0526100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTIDKLARSVQGPISQLLGISTISELLSKRHWSGLKTHLCATKPAIVLDQLLNAGVDSELVSRFFRWSQKEFNFSYDLEA TGKVLHFLTNSKRYSKVRSFLDNLVKKKKHTVSSVFHYLLLGSNRSCANALIIDMLVLAYVRNLEVHSACEAFRRAQDYG FKLSLTSCNPLLSSLVKENNIGEMEFVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDMKAWGISPNVVTYNT LVDGHCKKGSAGKMYKADAILKEMLANKVCPNEITFNTLIDGFCKDENVLAAKKAFEEMQRQGLKPNLVTYNSLINGLSS NGKIDEAIAFWDKMVDLGLKPNIVTYNALINGFCKKKMMKEATKLFDDITKQDLVPNAITFNTLIDAYCKDGMMEEGLAL FRSMPDEGISPNVSTYNCLIAGWCRSQNTRAANELLSEMENKGLKGDVVTYNILVDGWCKNGESRKAEKLLNEMLNVGVK PNHVTYNTLMDGYCEQGNLKAALNVRERMEKDRKRANVVTYNVLIKGFCKTGKLEAANGLLNEMLEKGLNPNRTTYDIVR LEMLEKGFIPDIEGHLYNISSMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 92 | 334 | 243 | 1.3E-144 | – | |
| PANTHER | 92 | 334 | 243 | 1.3E-144 | – | |
| Gene3D | 122 | 250 | 129 | 3.4E-31 | ||
| ProSiteProfiles | 129 | 163 | 35 | 6.456 | ||
| ProSiteProfiles | 164 | 198 | 35 | 9.482 | ||
| Pfam | 167 | 196 | 30 | 0.051 | ||
| TIGRFAM | 167 | 199 | 33 | 3.5E-6 | ||
| ProSiteProfiles | 199 | 233 | 35 | 13.066 | ||
| Pfam | 200 | 247 | 48 | 2.5E-17 | ||
| TIGRFAM | 202 | 235 | 34 | 1.1E-10 | ||
| ProSiteProfiles | 234 | 271 | 38 | 10.26 | ||
| TIGRFAM | 236 | 273 | 38 | 3.6E-5 | ||
| Gene3D | 251 | 370 | 120 | 1.2E-39 | ||
| PANTHER | 267 | 412 | 146 | 1.3E-144 | – | |
| PANTHER | 267 | 412 | 146 | 1.3E-144 | – | |
| Pfam | 271 | 319 | 49 | 1.0E-17 | ||
| ProSiteProfiles | 272 | 306 | 35 | 12.693 | ||
| TIGRFAM | 274 | 307 | 34 | 1.3E-9 | ||
| ProSiteProfiles | 307 | 341 | 35 | 13.746 | ||
| TIGRFAM | 309 | 343 | 35 | 2.4E-10 | ||
| SUPERFAMILY | 312 | 550 | 239 | 5.23E-7 | – | |
| Pfam | 338 | 368 | 31 | 3.8E-13 | ||
| PANTHER | 339 | 515 | 177 | 1.3E-144 | – | |
| PANTHER | 339 | 515 | 177 | 1.3E-144 | – | |
| ProSiteProfiles | 342 | 376 | 35 | 12.682 | ||
| TIGRFAM | 344 | 378 | 35 | 2.6E-9 | ||
| Gene3D | 371 | 440 | 70 | 2.6E-22 | ||
| Pfam | 376 | 425 | 50 | 6.2E-17 | ||
| ProSiteProfiles | 377 | 411 | 35 | 14.085 | ||
| TIGRFAM | 379 | 413 | 35 | 1.5E-11 | ||
| PANTHER | 395 | 567 | 173 | 1.3E-144 | – | |
| PANTHER | 395 | 567 | 173 | 1.3E-144 | – | |
| ProSiteProfiles | 412 | 446 | 35 | 11.104 | ||
| TIGRFAM | 415 | 447 | 33 | 4.5E-6 | ||
| Gene3D | 441 | 512 | 72 | 8.4E-24 | ||
| ProSiteProfiles | 447 | 481 | 35 | 13.669 | ||
| Pfam | 447 | 492 | 46 | 3.4E-16 | ||
| TIGRFAM | 449 | 482 | 34 | 1.0E-9 | ||
| ProSiteProfiles | 482 | 516 | 35 | 11.235 | ||
| TIGRFAM | 484 | 512 | 29 | 2.6E-7 | ||
| Gene3D | 513 | 569 | 57 | 8.2E-12 | ||
| Pfam | 517 | 559 | 43 | 9.1E-15 | ||
| ProSiteProfiles | 517 | 551 | 35 | 14.009 | ||
| TIGRFAM | 519 | 552 | 34 | 9.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0526100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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