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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0526100 |
| Transcript ID | LotjaGi3g1v0526100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G09820.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820; TrEMBL-Plants: tr|I1LIV3|I1LIV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0526100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94272332..94274083) extracted from Lotus japonicus Gifu genome v1.2.
GTTATCCTGCTCGTGCTCCAATTTCTGCTTACAGGTCCAATCTCCCAGTTATTGGGCATATCTACAATTTCAGAGCTGTT GAGTAAACGGCACTGGTCAGGGCTCAAAACCCATCTTTGTGCGACCAAACCTGCAATAGTTCTTGACCAATTGCTAAATG CTGGAGTTGATTCAGAACTTGTTTCTAGGTTCTTTCGATGGTCTCAGAAAGAGTTCAATTTTTCATATGATCTTGAAGCA ACTGGCAAAGTTTTGCATTTTCTGACAAATTCAAAAAGGTACTCTAAAGTCAGGTCATTTTTGGATAACCTTGTTAAGAA GAAGAAACATACAGTTTCTTCTGTTTTTCACTACCTTTTGTTGGGCAGTAATCGATCTTGTGCAAATGCTCTAATAATTG ATATGTTGGTCCTAGCTTATGTTAGAAATTTAGAAGTGCACTCTGCTTGTGAAGCATTTAGGCGAGCTCAAGATTATGGA TTTAAATTATCATTGACTTCATGCAATCCGTTGTTGAGTTCTTTGGTGAAGGAGAATAACATTGGTGAAATGGAGTTTGT GTACAAGGAGATGATAAAGAGAAGAATTCAACCTAACTTGACCACATTCAACATTTTCATTAATGGTCTTTGTAAAGCTG GTAAGTTGAATAAGGCAGAGGATGTTATTGAAGACATGAAGGCCTGGGGAATTTCCCCAAATGTAGTTACTTATAATACT CTTGTTGATGGGCATTGCAAGAAAGGTAGTGCTGGAAAAATGTACAAAGCTGATGCTATTTTGAAGGAAATGCTTGCGAA TAAAGTTTGTCCAAATGAGATTACCTTTAACACTCTTATTGATGGGTTTTGTAAGGATGAGAATGTATTGGCTGCGAAGA AGGCTTTTGAAGAGATGCAAAGGCAGGGACTAAAACCTAATTTAGTTACTTATAACTCACTGATAAATGGTCTATCTAGT AATGGGAAGATAGATGAGGCTATTGCTTTTTGGGACAAGATGGTTGACTTGGGCTTGAAGCCAAATATTGTTACTTATAA TGCTCTTATTAATGGGTTTTGCAAGAAGAAAATGATGAAGGAAGCAACAAAACTCTTTGATGATATAACTAAGCAAGATT TGGTTCCCAATGCAATAACATTCAATACCTTGATTGATGCGTACTGCAAGGACGGGATGATGGAGGAAGGACTGGCGCTA TTTAGATCAATGCCAGATGAAGGGATTTCTCCTAATGTTTCTACATATAACTGCTTAATTGCAGGCTGGTGCAGAAGCCA GAACACAAGAGCTGCCAATGAGCTTCTCAGTGAAATGGAGAACAAGGGCTTGAAAGGTGATGTTGTAACTTACAACATCT TAGTAGATGGATGGTGCAAAAATGGTGAATCAAGAAAGGCAGAAAAACTACTTAATGAAATGCTCAATGTGGGTGTGAAA CCTAATCATGTGACATATAATACTTTGATGGATGGCTATTGTGAGCAGGGAAATCTCAAGGCGGCGTTGAATGTGAGGGA ACGGATGGAGAAAGATAGGAAGAGGGCAAATGTTGTGACATATAATGTGTTGATTAAAGGATTTTGTAAAACAGGGAAGC TAGAGGCCGCAAATGGCCTTCTTAATGAGATGTTGGAAAAGGGTTTGAATCCAAATCGTACTACCTATGATATTGTAAGA CTGGAAATGTTGGAGAAGGGTTTTATTCCAGACATTGAAGGGCACTTGTATAATATCTCTAGCATGTCTTAA
CDS sequence (LotjaGi3g1v0526100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGTCCTAGCTTATGTTAGAAATTTAGAAGTGCACTCTGCTTGTGAAGCATTTAGGCGAGCTCAAGATTATGGATT TAAATTATCATTGACTTCATGCAATCCGTTGTTGAGTTCTTTGGTGAAGGAGAATAACATTGGTGAAATGGAGTTTGTGT ACAAGGAGATGATAAAGAGAAGAATTCAACCTAACTTGACCACATTCAACATTTTCATTAATGGTCTTTGTAAAGCTGGT AAGTTGAATAAGGCAGAGGATGTTATTGAAGACATGAAGGCCTGGGGAATTTCCCCAAATGTAGTTACTTATAATACTCT TGTTGATGGGCATTGCAAGAAAGGTAGTGCTGGAAAAATGTACAAAGCTGATGCTATTTTGAAGGAAATGCTTGCGAATA AAGTTTGTCCAAATGAGATTACCTTTAACACTCTTATTGATGGGTTTTGTAAGGATGAGAATGTATTGGCTGCGAAGAAG GCTTTTGAAGAGATGCAAAGGCAGGGACTAAAACCTAATTTAGTTACTTATAACTCACTGATAAATGGTCTATCTAGTAA TGGGAAGATAGATGAGGCTATTGCTTTTTGGGACAAGATGGTTGACTTGGGCTTGAAGCCAAATATTGTTACTTATAATG CTCTTATTAATGGGTTTTGCAAGAAGAAAATGATGAAGGAAGCAACAAAACTCTTTGATGATATAACTAAGCAAGATTTG GTTCCCAATGCAATAACATTCAATACCTTGATTGATGCGTACTGCAAGGACGGGATGATGGAGGAAGGACTGGCGCTATT TAGATCAATGCCAGATGAAGGGATTTCTCCTAATGTTTCTACATATAACTGCTTAATTGCAGGCTGGTGCAGAAGCCAGA ACACAAGAGCTGCCAATGAGCTTCTCAGTGAAATGGAGAACAAGGGCTTGAAAGGTGATGTTGTAACTTACAACATCTTA GTAGATGGATGGTGCAAAAATGGTGAATCAAGAAAGGCAGAAAAACTACTTAATGAAATGCTCAATGTGGGTGTGAAACC TAATCATGTGACATATAATACTTTGATGGATGGCTATTGTGAGCAGGGAAATCTCAAGGCGGCGTTGAATGTGAGGGAAC GGATGGAGAAAGATAGGAAGAGGGCAAATGTTGTGACATATAATGTGTTGATTAAAGGATTTTGTAAAACAGGGAAGCTA GAGGCCGCAAATGGCCTTCTTAATGAGATGTTGGAAAAGGGTTTGAATCCAAATCGTACTACCTATGATATTGTAAGACT GGAAATGTTGGAGAAGGGTTTTATTCCAGACATTGAAGGGCACTTGTATAATATCTCTAGCATGTCTTAA
Protein sequence (LotjaGi3g1v0526100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVLAYVRNLEVHSACEAFRRAQDYGFKLSLTSCNPLLSSLVKENNIGEMEFVYKEMIKRRIQPNLTTFNIFINGLCKAG KLNKAEDVIEDMKAWGISPNVVTYNTLVDGHCKKGSAGKMYKADAILKEMLANKVCPNEITFNTLIDGFCKDENVLAAKK AFEEMQRQGLKPNLVTYNSLINGLSSNGKIDEAIAFWDKMVDLGLKPNIVTYNALINGFCKKKMMKEATKLFDDITKQDL VPNAITFNTLIDAYCKDGMMEEGLALFRSMPDEGISPNVSTYNCLIAGWCRSQNTRAANELLSEMENKGLKGDVVTYNIL VDGWCKNGESRKAEKLLNEMLNVGVKPNHVTYNTLMDGYCEQGNLKAALNVRERMEKDRKRANVVTYNVLIKGFCKTGKL EAANGLLNEMLEKGLNPNRTTYDIVRLEMLEKGFIPDIEGHLYNISSMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 116 | 116 | 3.7E-31 | ||
| ProSiteProfiles | 1 | 29 | 29 | 5.985 | ||
| PANTHER | 2 | 122 | 121 | 5.3E-135 | – | |
| PANTHER | 2 | 122 | 121 | 5.3E-135 | – | |
| ProSiteProfiles | 30 | 64 | 35 | 9.482 | ||
| TIGRFAM | 33 | 65 | 33 | 2.5E-6 | ||
| Pfam | 33 | 62 | 30 | 0.037 | ||
| ProSiteProfiles | 65 | 99 | 35 | 13.066 | ||
| Pfam | 66 | 113 | 48 | 1.7E-17 | ||
| TIGRFAM | 68 | 101 | 34 | 7.8E-11 | ||
| ProSiteProfiles | 100 | 137 | 38 | 10.26 | ||
| TIGRFAM | 102 | 139 | 38 | 2.6E-5 | ||
| Gene3D | 117 | 236 | 120 | 2.0E-39 | ||
| PANTHER | 127 | 309 | 183 | 5.3E-135 | – | |
| PANTHER | 127 | 309 | 183 | 5.3E-135 | – | |
| Pfam | 137 | 185 | 49 | 7.3E-18 | ||
| ProSiteProfiles | 138 | 172 | 35 | 12.693 | ||
| TIGRFAM | 140 | 173 | 34 | 9.6E-10 | ||
| ProSiteProfiles | 173 | 207 | 35 | 13.746 | ||
| TIGRFAM | 175 | 209 | 35 | 1.7E-10 | ||
| Pfam | 204 | 234 | 31 | 2.8E-13 | ||
| PANTHER | 205 | 380 | 176 | 5.3E-135 | – | |
| PANTHER | 205 | 380 | 176 | 5.3E-135 | – | |
| ProSiteProfiles | 208 | 242 | 35 | 12.682 | ||
| TIGRFAM | 210 | 244 | 35 | 1.9E-9 | ||
| Gene3D | 237 | 328 | 92 | 1.6E-32 | ||
| Pfam | 242 | 291 | 50 | 4.3E-17 | ||
| ProSiteProfiles | 243 | 277 | 35 | 14.085 | ||
| TIGRFAM | 245 | 279 | 35 | 1.1E-11 | ||
| PANTHER | 262 | 433 | 172 | 5.3E-135 | – | |
| PANTHER | 262 | 433 | 172 | 5.3E-135 | – | |
| ProSiteProfiles | 278 | 312 | 35 | 11.104 | ||
| TIGRFAM | 281 | 313 | 33 | 3.2E-6 | ||
| ProSiteProfiles | 313 | 347 | 35 | 13.669 | ||
| Pfam | 313 | 360 | 48 | 2.3E-18 | ||
| TIGRFAM | 315 | 348 | 34 | 7.5E-10 | ||
| Gene3D | 329 | 439 | 111 | 8.2E-31 | ||
| ProSiteProfiles | 348 | 382 | 35 | 11.235 | ||
| TIGRFAM | 350 | 378 | 29 | 1.9E-7 | ||
| ProSiteProfiles | 383 | 417 | 35 | 14.009 | ||
| Pfam | 383 | 425 | 43 | 6.5E-15 | ||
| TIGRFAM | 385 | 418 | 34 | 7.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0526100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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