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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0533000 |
| Transcript ID | LotjaGi3g1v0533000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rop guanine nucleotide exchange factor; TAIR: AT4G38430.1 rho guanyl-nucleotide exchange factor 1; Swiss-Prot: sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1; TrEMBL-Plants: tr|A0A0S3SE88|A0A0S3SE88_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0533000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94977567..94980594) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGAGTGTTTCGTCTGAGGAAGGTTCTGACCGATGTGGGAGCTACAGCTTGAGCGCTGACGTCAGCGAATCCGAGAG CTGTAGCAGCTTCCGCCGTTTCGACGCCGAGGGGGCTTCCAGCTCCGCCAACCTCTCTCCGCCTCCGCTTGCCGCCTCTC ACTTCAACTTCCCGCCGCCGCAGGTGATGTTGCCGGTCATCGGTGGCAAGGATGTCGTCGTTTGGGATCACAAGCGTGAC CTTGACTTGTCAGGTACTCTCTCATAGCCTCATTGACTCTTCCTTCTCTTCCGTACAATTGCAGATTCCGAGATTCGCTC TTCAATTCACGCTGAGTGAGGAGCGAGAGTGTTGAATTTGAAGAATGAACAGTTTTTCTGTTTTGTTTTTGTTTTGATTT GTTTTTGCAGAAGTGGAGATGATGAAGGAGAGGTTCGCTAAGCTGCTTCTAGGGGAAGACATGTCTGGTGGGGGAAAAGG GGTCTGCACTGCGCTTGCTATCTCGAATGCAATCACCAACCTCTCTGGTTTGTTCTTTTCCTTGCTTAATTTGGAGTTAA TCATCAAATTAGCACTTACTAAATGTAGATTTTATAAATCAATTTAGTAGTTACATCTAGCATTTTAAGAATTAACAGAA TTCTCATGACTAATTTGTGAAGGTCAAAGAATTTGGTTACCCAAATGGAAATGCGATTTGGTTTAACTACTAATTAACTC TTTACTTGTTAATTTGGGGATGTTGTATAGTTTAATGACTAATTTAACTATTTACTTGTTAATTTGAGTGTAAAAGATGT TAATCTTTGTGTGGGTGGGATTTTAATGGCAGCAACTGTGTTTGGCGAGCTATGGAGGTTGGAGCCACTGGCACCGCAGA AGAAAGCCATGTGGAGAAGGGAAATGGAATGGCTTTTATGTGTAAGTGACTCAATTGTGGAGCTTGTGCCGTCGGTGCAG CAGTTTCCTGGGGGTGGAACCTATGAAGTGATGGCTACGCGTCCTCGTTCTGATTTGTACATCAATCTCCCGGCTTTGAA GAAGCTTGATGGGATGCTGCTTAGCATGCTGGAGGGTTTTCATGATACTCAGTTTTGGTATGTTGATAGGGGGATTATAT TGGGCGATTCCAAGGATTGTGATGAGTATGGTAGACCTTCGGTTCGGCAAGAGGAGAAATGGTGGCTTCCATCTCCTAAG CTTCCACCAAACGGCTTGTGCGAGGATGATAGGAAGAAGTTGCAGCAGTGCAGGGATTGCACCAACCAGATACTGAAGGC TGCCATGGCAATCAATAGTTCTGTTCTTGCTGAAATGGAGATTCCTGGTGCCTATGTAGAATCGTTGCCAAAGGTAATGC TTTGTCGTGCAAACAGGAAATAAAATTAGTTCATTGCCATATTTCTGTATGCACTGGGTTCTTAATTTTGGTTTGGTCAA TAACTTCTAATATATGAATGTCATGCTAAAAGTGGTAGACAGACATCAACTCTAATGCATCTTTGAGTTGCACAAACCTT TAATTTTGTGAGATATTTATGTATAGAAGTGCTGACTACTGACTCGTGGACTTGACACCCCCTGCCTCTGTTTTATCTTT GGTTCAAAAAAATAGATTGAACTAGAATTCTGTTATGGCTTGATATTTGGTAGAATTTCTTGAAAATGGGCTAAAATTTG CTGAAAACTGAAATGCCTTGTTCATTTGTACAACTACAAATGCAGAATGGGAAAGCTTGTCTAGGGGATATAATCTATCG GTACATAAGTGCTGACCAGTTCTCATCAGAATGTCTCCTTGATTGCCTGGATCTTTCATCAGAGCACCACACTCTGGACA TAGTTAATAGAATTGAGGCTGCTGTGAATGTATGGAGACTGAAGGACCATAAGAAACATCTAAGTTCTGTGAAAGCCAGA CGGTCTTGGAGTGGGAAGGTTAAGGGCCTTGTTGCTGATGGGGAAAAGCACCATTTTCTTTCCCAAAGGGCAGAGACACT TCTACAAAGCTTGAAACACCGATTTCCAGGACTCCCTCAAACAGCACTAGATATGGCCAAGATACAATACAATAAGGTGT GTGTTTTTCTTGATCTTTCAGATCTTTAGTTTGAATTGAACTCCCCACTTGTTCTGTTGGACTATTAAGTTTGGTGTCAC TGCTTGTAATAAAAGTTGAAGTAAATTAGCTAATAGTTTGTGTCAAGGCAATATGGGATATCTTAGGTGAATCAGATTGG GGCAATTCTTTTGTTAGTTGCAGTTAGCACTCAATTTTTGGCCAAAAATAAATCCTGGCAATGGTATAACTATAAAGAAC TAATAGTTTCATTCCACCTGTAATTAGTAAAAGAATATAAAGAATTTCCTTACAAATAGATCAGTTGTGATTCCTCAGTT TAATGGTCATTATTGATGATTGGTTGTGGCATGTCAATGAGATCAATTACAGTCTATAGCTTCTGTCTCTAGATGTTACC GACTCTGGGCTTTATAAGTGGTTTATGATTAATAAACAGTTACTGAGGTTTGCCACTGGGAGAAGGGGGCTTAGAATCAA CTGAATAAACTTCATAGAATTTTCTTTTTCTTGCAGGATGTAGGGCAGGCTATTCTTGAAAGTTATTCAAGGGTGATGGA GAGCTTGGCCTTCAACATAATGGCCAGGATTGATGATGTCCTTTATGCAGATGATACTGTAAAACGATGTGCAGCTGCAG ATTCTATCCCTCTGTTCAGCAGGGGCGGTTTTGGGGGTCTTCCCATGCAGAAGCGAATGTCTCCTAGCCCCTTCTCAATT CAACACAGCCCATATGCCTCTCCATTTGCAACCCCATCATTCTGCTCCTCCTCTCCTGTTTCCGGGAGCCCTTGCAGTCC GCGGAGGACACGTGCTGTGAAGAAGAATGCTCAGGCAACGGAATCAAAGACCGAAAAGTTGGCAGCTGCTGATTTTGAGA GGGTATGGTCATATACGGGAAACCTGAGTGCAAGAAGAGCAACTGGTGATGCTCCAGAAAGGGACTGA
CDS sequence (LotjaGi3g1v0533000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGTGTTTCGTCTGAGGAAGGTTCTGACCGATGTGGGAGCTACAGCTTGAGCGCTGACGTCAGCGAATCCGAGAG CTGTAGCAGCTTCCGCCGTTTCGACGCCGAGGGGGCTTCCAGCTCCGCCAACCTCTCTCCGCCTCCGCTTGCCGCCTCTC ACTTCAACTTCCCGCCGCCGCAGGTGATGTTGCCGGTCATCGGTGGCAAGGATGTCGTCGTTTGGGATCACAAGCGTGAC CTTGACTTATTCCGAGATTCGCTCTTCAATTCACAAGTGGAGATGATGAAGGAGAGGTTCGCTAAGCTGCTTCTAGGGGA AGACATGTCTGGTGGGGGAAAAGGGGTCTGCACTGCGCTTGCTATCTCGAATGCAATCACCAACCTCTCTGCAACTGTGT TTGGCGAGCTATGGAGGTTGGAGCCACTGGCACCGCAGAAGAAAGCCATGTGGAGAAGGGAAATGGAATGGCTTTTATGT GTAAGTGACTCAATTGTGGAGCTTGTGCCGTCGGTGCAGCAGTTTCCTGGGGGTGGAACCTATGAAGTGATGGCTACGCG TCCTCGTTCTGATTTGTACATCAATCTCCCGGCTTTGAAGAAGCTTGATGGGATGCTGCTTAGCATGCTGGAGGGTTTTC ATGATACTCAGTTTTGGTATGTTGATAGGGGGATTATATTGGGCGATTCCAAGGATTGTGATGAGTATGGTAGACCTTCG GTTCGGCAAGAGGAGAAATGGTGGCTTCCATCTCCTAAGCTTCCACCAAACGGCTTGTGCGAGGATGATAGGAAGAAGTT GCAGCAGTGCAGGGATTGCACCAACCAGATACTGAAGGCTGCCATGGCAATCAATAGTTCTGTTCTTGCTGAAATGGAGA TTCCTGGTGCCTATGTAGAATCGTTGCCAAAGAATGGGAAAGCTTGTCTAGGGGATATAATCTATCGGTACATAAGTGCT GACCAGTTCTCATCAGAATGTCTCCTTGATTGCCTGGATCTTTCATCAGAGCACCACACTCTGGACATAGTTAATAGAAT TGAGGCTGCTGTGAATGTATGGAGACTGAAGGACCATAAGAAACATCTAAGTTCTGTGAAAGCCAGACGGTCTTGGAGTG GGAAGGTTAAGGGCCTTGTTGCTGATGGGGAAAAGCACCATTTTCTTTCCCAAAGGGCAGAGACACTTCTACAAAGCTTG AAACACCGATTTCCAGGACTCCCTCAAACAGCACTAGATATGGCCAAGATACAATACAATAAGGATGTAGGGCAGGCTAT TCTTGAAAGTTATTCAAGGGTGATGGAGAGCTTGGCCTTCAACATAATGGCCAGGATTGATGATGTCCTTTATGCAGATG ATACTGTAAAACGATGTGCAGCTGCAGATTCTATCCCTCTGTTCAGCAGGGGCGGTTTTGGGGGTCTTCCCATGCAGAAG CGAATGTCTCCTAGCCCCTTCTCAATTCAACACAGCCCATATGCCTCTCCATTTGCAACCCCATCATTCTGCTCCTCCTC TCCTGTTTCCGGGAGCCCTTGCAGTCCGCGGAGGACACGTGCTGTGAAGAAGAATGCTCAGGCAACGGAATCAAAGACCG AAAAGTTGGCAGCTGCTGATTTTGAGAGGGTATGGTCATATACGGGAAACCTGAGTGCAAGAAGAGCAACTGGTGATGCT CCAGAAAGGGACTGA
Protein sequence (LotjaGi3g1v0533000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVSSEEGSDRCGSYSLSADVSESESCSSFRRFDAEGASSSANLSPPPLAASHFNFPPPQVMLPVIGGKDVVVWDHKRD LDLFRDSLFNSQVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLAPQKKAMWRREMEWLLC VSDSIVELVPSVQQFPGGGTYEVMATRPRSDLYINLPALKKLDGMLLSMLEGFHDTQFWYVDRGIILGDSKDCDEYGRPS VRQEEKWWLPSPKLPPNGLCEDDRKKLQQCRDCTNQILKAAMAINSSVLAEMEIPGAYVESLPKNGKACLGDIIYRYISA DQFSSECLLDCLDLSSEHHTLDIVNRIEAAVNVWRLKDHKKHLSSVKARRSWSGKVKGLVADGEKHHFLSQRAETLLQSL KHRFPGLPQTALDMAKIQYNKDVGQAILESYSRVMESLAFNIMARIDDVLYADDTVKRCAAADSIPLFSRGGFGGLPMQK RMSPSPFSIQHSPYASPFATPSFCSSSPVSGSPCSPRRTRAVKKNAQATESKTEKLAAADFERVWSYTGNLSARRATGDA PERD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 564 | 564 | 6.4E-300 | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 564 | 564 | 6.4E-300 | ||
| ProSiteProfiles | 83 | 463 | 381 | 114.838 | ||
| Gene3D | 85 | 235 | 151 | 6.8E-67 | – | |
| Pfam | 92 | 457 | 366 | 1.8E-181 | ||
| Gene3D | 262 | 453 | 192 | 1.4E-63 | – | |
| Gene3D | 293 | 419 | 127 | 1.4E-63 | – | |
| MobiDBLite | 509 | 534 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Rho guanyl-nucleotide exchange factor activity | Stimulates the exchange of guanyl nucleotides associated with a GTPase of the Rho family. Under normal cellular physiological conditions, the concentration of GTP is higher than that of GDP, favoring the replacement of GDP by GTP in association with the GTPase. |
Expression pattern of LotjaGi3g1v0533000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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