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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0543900 |
Transcript ID | LotjaGi3g1v0543900.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Methyltransferase; TAIR: AT1G64970.1 gamma-tocopherol methyltransferase; Swiss-Prot: sp|Q6ZIK0|GTOMC_ORYSJ Probable tocopherol O-methyltransferase, chloroplastic; TrEMBL-Plants: tr|Q4U3Z5|Q4U3Z5_LOTJA Gamma-tocopherol methyltransferase; Found in the gene: LotjaGi3g1v0543900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96002227..96006394) extracted from Lotus japonicus Gifu genome v1.2.
CAGATGACAGTAACCTTCCTTCTCCAGGTGTGTGCTCAACTGGTGGTGTTGTGAGGGCACTGATGACTCTTCTGGTTTGC TTCTCATTTAGGTGATGAAGATGTTTTCCTTACTGAGATAATGGTCATAAAACCGGGCATGTCTTTTCGCTAGTAGAGAG AGTTCAAGAAGGTTTAGTGTGAGTGTGATTGCTCTAAGGTTTGTAGATCTCCTTTCGTCATGGTGGGTTGGGTGCCATTC CGATTTGAAGTGTAGAGATAGCATTGATCCTCAACTATTTCACTTGGATTGGTAGGTGTTGTTGATTCATGCATCTAAAA GTTGCAAGGTAGTAGTAGATAAACAGGTAGAGTTGGCTCATAGACAATGTTCTGAGAGACCCATCCTTCTTCTGTATTTA CTATTATTACTTCTGATAAGATAGAGAGGCTCATCCTTCTGCTTTGTTTATTATTATCAGTGATAAGAGAGAGACTCATC CTTCTGTTGTGTTTACTATTATCACTTCTGATAAGACGGTTAGTCAGAAAACTCTAAATAATCTGAAAAAGTTGGCCTCA TAAACAATGTTGAGTTTGTGTTTTGGGAGACTCATCCTCCTTCTACTGTGGTTACTATTATTACTCATGATAAGAGAGTT AATCAGGAAACTTTTTTCAATTTATTTTGTTTTGCATGTATCTCTTTTGAAGAAAAAAAAAACCTAAATTCCTAGGGTTT CACCAATTTAAGTAAAGCTTAACTCAACACATTAGTTACAATGAAACTCTAGTAAGCTTAGGAAGAGTGTACACATTACT CTTTAAGAAGGGGAGAAGGGGGTAGATAGATACGTATTAGAGTTGAAGTTGTAAGATATAGTCTGGCCCCCAAAATCAAA GTTTTACTAAGTTGAGCAAGAAGTAAATGTGAAATTCCCACCCACCAAACTTGTCACTAAGCACCTATTAAGTATCCTCA ATCAATTGGAATATCCTTTGCTGTTCAATTTTCTTGACTTGGAAAACTGCAACTCCATCCATCGAGATAAGATTTGCTAA ATTAAAGCAGGTACCGTTGAGCTCCTTTAATTTATTATATATATTCCTTTCCTTTTTTTAATAAAATTATCGCTTTGGTG GTGGCCACTTGCTGGCAAAGCATGGCCACGATGATGATGTCAATTTTTCCACCACCACCAAGCGTGGCTTCATTATTTAT ACTATCACACTGCACTCACACAATTCGTGTACAATCAACAACGCAGTTCACAGGTTTTTCTATAAGAACCAGAACACGTG ATTGTAGTAGAATTCTGTTAACAGAAGAACGAGAAATGGCGGTGATGGAGGAGAAGAAGCTTTTGCAGACCGGAATCGCT GAGTTCTACGACGAGTCGTCCGGGTTATGGGAAGACATGTGGGGAGACCACATGCATCACGGGTTTTACGAGCAGGATGT CACCGTCTCTGTTTCAGACCACCGTGTTGCTCAGATCCGAATGATTGAAGAGTCTCTTCGTTTTGCTGCACTTTCTGGTA ATCTTTCTTATGTGTTTGGTTTTCAGTTTAGAAGTTCCTTTGAGATGTTAAAATTCAATATTAAAATTTGAGATCTCACA TTCTATTGCCTTAAATCTGAAAGTAGTTTTGAACCTTCCATCTAATGAAAACACTTTTAAATTGAAAACCAAACATGCAT GCATGTAGTACTAAATCTGATTTGATTTGATTTGATTCCATTAATTAAACATTTGTGATTTGATTTGATTGATGAGATGT ATGTTTATTTTATTTAATGGTTTGAAATGGAGTGAGGGAGTGAAACTGACACGTAGTAATGATCTGAATCTGTTGTTTGT TTCTGAATGTCTGGTTTCAGAGGATCCAGCTAAAAAGCCAGAGAGTATAGTGGATGTTGGGTGCGGCATAGGAGGCAGTT CTAGGTACCTAGCTAAGAAATTTCAGGCAAAGAGCGTTGGTATCACTCTGAGTCCTGTTCAAGCTCAGAGAGCAAATGCT CTTGCTGCTTCTCAAGGCTTAGCTGACAAGGTCATTCACTGCCATTTTTACTTTTTCATCGCTCTAAAATTCTCAAATTC ATTCAGGGACACCTGCACAATGTCACACAATAGACTCTCCAATTAATTACATTATCAGAAATATGATTTTTATGTTACAT TATATTCTGAAAATTAGTTTCTTTAATGTAATTTTTGGAGGGTTTACTGATTATGACACTGTGAGTGCATAGGTGTCCAC TATATGTCTAGCATTCTCTTTATAAAACTATTCATGTAAACTGAACAAATTTGGGCTTCTACAAAAGTGGCTAATTAATG TTGGCATTCATGTTCATGTGATGGCAGGTTTCCTTTCAAGTTGCTGATGCTCTAGAGCAACCATTCCCTGATGGTCAGTT TGATCTGGTGTGGTCCATGGAGAGTGGAGAGCATATGCCTGACAAACCTAAGGTTTCAATATTTCTCTTAAACACCATTA ATTTGTGGTAGAACTGAATATTAATGTTTAAATTGCTTTAACGTAATGCATTTTTGGTGTATATACACCAAAATGAAGAG GATATGAGAAATAAGTGATAAATGTAATATATGAATATGATATATAAGAAAACGGAGAGAAAAACTTGAGTGTTTAGGAA GTGTTGATAATGTTGGCTGAATTGTTCTATAACTTCTGTTTTGTAAGCTGGTAATGTGATCTCACTATCTCAGTTTGTCT GCTTCACACAAAAATTTATAGTTTGTTGGCGAGTTAGCTCGGGTGGCAGCACCAGGTGGGACCATAATAATTGTAACATG GTGCCACCGGGATCTTGGACCAGCTGAAGAATCCCTGCAGCCATGGGAGCAGAATCTCTTGAAGAGGATATGCGATGCAT TTTACCTTCCAGCATGGTGCTCAACTGCTGATTATGTCAAATTGCTGGAATCCCATTCACTTCAGGTACACCAAATCAAA AATCCAAAACTCAACTATTTTCAATACATGTTTGGATATACAATGGAAAATCACGGTAGACATAAACATATTTTCTTAGT TTTTGCGAACTATTCACCATAATTTTGACACCCCCTTTGATTTTTCACAATTTATTCAAACATGCACTTAATAGTATTAC ACACCAAATTGCTTTTAATTAACATGCTGAATATCAATTTCTACTTAGGACATCAAATCAGCAGATTGGTCTCCCTTTGT TGCTCCATTTTGGCCAGCTGTGATACGCTCAGCATTTACATGGAAGGGTCTCACTTCACTGTTGCGCAGTGGTATATATA TAACCTCAACATTCACATATATTGTATTCAATCTCATTTTTATTTAAACATTTAACCAGGAACAATACCCTATATATCCA TCTTATTCTTCTCTCAAATACCCATCTCCTACTATATAGCACAGGTGTTGATTTGTATGTTGTTATATTTCTGGGCAGGA ATGAAAACCATAAAAGGAGCTTTGGCTATGCCATTGATGATAGAAGGATTCAAGAAGGGTGTCATCAAGTTTGCCATTGT TACATGTAGAAAGCCTGAAAATGTGGAGATAGAATAATTTATAGTATTTAATGACTCGAGTTTCCCATTGGTGATTGTTG ATGAATAATATATAGTTCAAATATTAGAGGAAGAATAAGATAGAATAAGTAACAGAGGATGAGAATTGTTGACGATAAAA CAAGATGTTATTGCTTCTACCAAGTCAAAACCTTTTGGGGGTTATTGGGGTGAGTGAAAATCAAGTGATGCAAGTCAGTT CATGTTGGGGAGCCTGCAATTAAACTAATGTAAGGTCCATTTCTTTAAGATGTTATTGCTTTAGCCTTAAGAGGTGGCAA AATACATTCTTTTCGTCAGATTTGGTTTTTGTTTTAAAGAAAGAAAGAATTTGGTTATTTACTAGGAAGTGGTATCATAT GGAATATTGGTTAAATATATAAATAAAATTGGAAAATGATGTAATATAAAGTATATAATAAAATAATAATAATAATAGTA ATAATAAACATCTTGTAACCAAAAAAATATTATAATAATGAACTAAAATAAAAGTTAGAGATGTTGAGTAATATGTTGAA TTAATGTTTAGTGGAAAGCTATGCATTTAGTGATTAGTGGAGTAATTATGCACGCATTAAATAAGTAGTGGTGACTCTTT GATTATTG
CDS sequence (LotjaGi3g1v0543900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACGATGATGATGTCAATTTTTCCACCACCACCAAGCGTGGCTTCATTATTTATACTATCACACTGCACTCACAC AATTCGTGTACAATCAACAACGCAGTTCACAGGTTTTTCTATAAGAACCAGAACACGTGATTGTAGTAGAATTCTGTTAA CAGAAGAACGAGAAATGGCGGTGATGGAGGAGAAGAAGCTTTTGCAGACCGGAATCGCTGAGTTCTACGACGAGTCGTCC GGGTTATGGGAAGACATGTGGGGAGACCACATGCATCACGGGTTTTACGAGCAGGATGTCACCGTCTCTGTTTCAGACCA CCGTGTTGCTCAGATCCGAATGATTGAAGAGTCTCTTCGTTTTGCTGCACTTTCTGAGGATCCAGCTAAAAAGCCAGAGA GTATAGTGGATGTTGGGTGCGGCATAGGAGGCAGTTCTAGGTACCTAGCTAAGAAATTTCAGGCAAAGAGCGTTGGTATC ACTCTGAGTCCTGTTCAAGCTCAGAGAGCAAATGCTCTTGCTGCTTCTCAAGGCTTAGCTGACAAGGTTTCCTTTCAAGT TGCTGATGCTCTAGAGCAACCATTCCCTGATGGTCAGTTTGATCTGGTGTGGTCCATGGAGAGTGGAGAGCATATGCCTG ACAAACCTAAGTTTGTTGGCGAGTTAGCTCGGGTGGCAGCACCAGGTGGGACCATAATAATTGTAACATGGTGCCACCGG GATCTTGGACCAGCTGAAGAATCCCTGCAGCCATGGGAGCAGAATCTCTTGAAGAGGATATGCGATGCATTTTACCTTCC AGCATGGTGCTCAACTGCTGATTATGTCAAATTGCTGGAATCCCATTCACTTCAGGACATCAAATCAGCAGATTGGTCTC CCTTTGTTGCTCCATTTTGGCCAGCTGTGATACGCTCAGCATTTACATGGAAGGGTCTCACTTCACTGTTGCGCAGTGGA ATGAAAACCATAAAAGGAGCTTTGGCTATGCCATTGATGATAGAAGGATTCAAGAAGGGTGTCATCAAGTTTGCCATTGT TACATGTAGAAAGCCTGAAAATGTGGAGATAGAATAA
Protein sequence (LotjaGi3g1v0543900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATMMMSIFPPPPSVASLFILSHCTHTIRVQSTTQFTGFSIRTRTRDCSRILLTEEREMAVMEEKKLLQTGIAEFYDESS GLWEDMWGDHMHHGFYEQDVTVSVSDHRVAQIRMIEESLRFAALSEDPAKKPESIVDVGCGIGGSSRYLAKKFQAKSVGI TLSPVQAQRANALAASQGLADKVSFQVADALEQPFPDGQFDLVWSMESGEHMPDKPKFVGELARVAAPGGTIIIVTWCHR DLGPAEESLQPWEQNLLKRICDAFYLPAWCSTADYVKLLESHSLQDIKSADWSPFVAPFWPAVIRSAFTWKGLTSLLRSG MKTIKGALAMPLMIEGFKKGVIKFAIVTCRKPENVEIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 27 | 27 | - | – | |
Phobius | 1 | 13 | 13 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 16 | 16 | - | – | |
Phobius | 14 | 22 | 9 | - | – | |
Phobius | 23 | 27 | 5 | - | – | |
Phobius | 28 | 358 | 331 | - | – | |
ProSiteProfiles | 57 | 353 | 297 | 154.561 | ||
PANTHER | 63 | 352 | 290 | 4.5E-140 | – | |
PANTHER | 63 | 352 | 290 | 4.5E-140 | – | |
SUPERFAMILY | 71 | 353 | 283 | 1.84E-58 | ||
Gene3D | 77 | 352 | 276 | 5.5E-57 | – | |
CDD | 135 | 237 | 103 | 6.6558E-16 | – | |
Pfam | 136 | 234 | 99 | 2.5E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. | ||
Biological process | Methylation | The process in which a methyl group is covalently attached to a molecule. |
Expression pattern of LotjaGi3g1v0543900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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