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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0544200 |
| Transcript ID | LotjaGi3g1v0544200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA topoisomerase 1; TAIR: AT5G55310.1 DNA topoisomerase 1 beta; Swiss-Prot: sp|Q9FJ79|TOP1B_ARATH DNA topoisomerase 1 beta; TrEMBL-Plants: tr|A0A1J7GEG9|A0A1J7GEG9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0544200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96028051..96033380) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCTTCAAATTTATTTTGTAGGTTGCTACAATGTATGCGGTCATGCGAGATACAGATTACATGCTGAAAGATAAGTT CAAGGAAAATTTCTGGAACGACTGGCGAAAGTTGCTAGGAAAAAATCATGTAATTCAGAACTTAAAGGATTGTGACTTTA CCCCGATCTATGACTGGTGCCAAACTGAAAAGGAAAAGAAGAAACAAATGACTACAGAAGTAAGTCGATAACTTGGTATA CATAATTTCATTTCATAATAGTAGAGGTTGATATTTCTGAGCATGATTTGCTTTTTTAAGTTCGTATAGGTTTGCAGAGA TTTATTGAAATGAGATAGGACAATAGAATTCCCACTACAGGAAAAATAGAATTCATACATGGCAAAATGAAGGCAGAACA GAATTCTGTTAATAAGAACTGAAAGAAAGGAGTGGGGTGTGAAGGAGGTAGATAGAAATTTAGTAGGAAGTTTTGGGAGG TTTCTAGACTCTTAGAGGTGCAGCATTTTTTCGTTCTCTGTATTTCTTTCTTACCTTTCAGTTTTTGGGATAGTTATCTC TAGTTTTCCCTTCCAGTATTTAGAGAGTTTTTTTTTATGTAATTAGTTCTCCCAGGGCTGATGGTGATCATGTTATTACT CAAGGAAAGTAGAGTGTTTTACTAAAATTGAATATTATATACCTAGTCTGATTTCTATTTCTTGTCAGTATGGATGTCAA ATGTGCCAAATATGTACCTAGTTAACCTTAGTGCTCGTAATTCATGTCTTATACTATTATTTCAAGTATTGACCCTTTTG TGTCTTCTCTTTATTCAGGAGAAGAAGGCTCTGAAGGAAGAGAAAACAAAGCAAGAGGAGAAATACACGTGGGCTATTGT GGATGGTGTTAAAGAGAAGGTTTAATCTTGCCTTTCACTCTTTCAAATTCATAATGGGAGTTGTTATGCACTGATGAAGT TGCACTTGTATCTCCTATATAATTGTGACATTTCTCTGTTGAAATTTAATCTTTAGATATATCTTCATGACGCCAGCTGT TATTTTGAATTTAACCATTAAGAAACACTTTAACTGATGACTAACTTTTATTAAATCTTCATTTTAGGTTGGAAATTTTA GAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGAGAGCATCCCAAGGTTGTTATGATAGATGTTACTACCGGAACTAAG ATACATGCGCATTTTTCAGATATAATGATTTCATAAATACTATCTTCATTCTCAGAGTTTTGTCTGGCTTCTACAGTTAA TACCGTTTACTTATTTCTGCAATTTATGTTATTAGATGGGAAAATTGAAAAGACGCATTCGTCCTAGTGATATCGTAATT AATATTGGAAAGGATGCACCAATTCCTGAATGTCCTATTCCTGGTGAAAGGTATTACTCTTCCAAATCTATTTGGAGAAT TTTTTTGAAGAGCAAATTGATATTGTATATTCTGCCAAGTTCAGAACCTTTTATTTGTTTGAATCACTGAGCTGTGTAAC CATTGCAGGTGGAAGGAGATAAGACATGACAATACAGTTACATGGTTAGCCTTCTGGAATGATCCGATCAATCCAAAGTT GTTCAAGTATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGCCAAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGT TGAAGGTGCTTTTATGCTTTGTTTGTTAGCTTGTTACAAATTCCATATTTTTCCCATGATATTTTTGGATTGCAGTTAAA AGAACCATTTTAATTACCGTAGTTCTTGACATCTGGGTGCAGGATTATATAGGGAACATTAGAGCGGCATACACGAAAGA TTTTACAAGTAAAGATATTACGAAGCAGCAAATAGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCA ATGAGAAGGTATTACGTCTGTGTATGTACTTTCTTACTCTCATTTGCGGTATCCTCTTCCCTAAAAGATGGACACATACA CGAGGTCAAGACACACACAAATGTACACATTGTTAGAAAAATGTATTATATCTTTTAAGTAAATTTGACTGGTAAGGACT TGGTGCATGTTTGGATACATGGTAGATTGTCTCGTTGGAACTTTGAATGGGAATTGATTCTGGGAGAAGCTACTTTTAGT AGCTTTTGTGGGAGCAGAATTGATTATAGAAGAATTAAATGTGAATCCAAACACACTATAACTAGGTTGCAGAGATTAAT AAGTTTTAAAGAGAAACTAATCATTTGCTACTTTCTCCTTTATATTTTGCTTTTGCGATCATAGTTTAAAGAACTATATA AGATGTTTCCAAGACAATGGAAAACAGCCTGAACTAGGTTGTAGTCGTAGATGACATCATCATGACTTATGATTAGAATT TCCTGAAGGAACTATTTGCTGGTATTGATTCCTTTTTAGTGAATGTCCTGGAGATATTGTTTATTTCTTGCTGCAACTAC TTTATGTGAAAATTTGTTTTAAAAGTATTTATGGATGATCAAACTGTGTTAATAATATATAACACTTTCAATGGTTGAGC CTATCGAATCATTCAATAAAAGTATAGCATTCTTTGAGTTTATTATAAGCTTTCCTAACATGCTTGAATGTCTTTTATCT TCAGACAATTACTTTGATTTTTAATGATTAAATTTAGTCATTTCTCAATGGCATTTGCTTAGGATGATGATGAAGCTGAT ACTGTTGGTTGCTGCACATTAAAAGTGGAGAATGTGACAAGAGAAGCCCCCAACAAGTTGAAGGTATTGGTGTTTCTAAT TATTTTCACTAATTTTTTTGGTTGGGTTGATTGGTTTTAGGTCTTAGTTTAATAAGTCCTCTCTTATATTGTTCCAACAA TAGCTGTCTAGTTGCTCCTGTACCATTTATACTTATTAGTGAACTTGTTTCCTTTCTGTTACAATGCAGTTTAACTTCCT TGGTAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTCGAGCTTCCTGTTTACAATGCAATATTGAAGTTCCAAAAAG GTGGGAAACCTTTTATTTTGATCTTCAATTGTTTTTATGTTTCTCGTCTGCAGCGTGTAAGTGTTTTCCTCCCTTAATTT TCAGATAAAAAGGGTGGTGATGATCTTTTTGACATGTTGGATACAAGTAAATTAAATGCACATCTGAAGGAACTCATGCC TGGTCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCTATCACATTGGATGATATGGTAAAAATAGATTTAGCTTAAA CAATCCTGAAATTCACATTCCTTGGAAAAGAAAAAAGAAAAGGATTATTTCCTAGGTCTTTTTCTTTTGTTCTTTTATAT ACTGTCAGTGTAAACTGTTAATGCTTTGTATGTTGAATGTGGTTGACATGGCAACACCAAATTTAAGAAAGTGTACCTTA GTTAGATTTGAAATATTCAATATCATCAAATTTAGGATTGGAGTCATATATAGTGTTCATACCCATGATTCAACTGTTCT ATTAGAATTAAATATTCCAAATGCACATTTGTTTGTGCAACATTAGATCTACCTTTGTATCTGTGTAGGGTTATTTAAAA CTTTTGTACACATATCCATGTACAATATAATGACAGCACAAATGCAATATTGTTACTTGCCTCTATATTGTTATGCTCCC CTGAAACGCTTTGATAAATCCTTTATTTTATCGGGTCATATATTATATAGACTTGTATATTTATTTTTCCTGGACTTGTG TAATAACAGTTGAATAAGGACACTAAAGATGGAGATGTTGGGGAAAAGATTGTTGTTTATCAGCATGCAAATAAACAGGT AATTGGCTTTAATTATTGCTTTATTATACCTACCATATTGCATTCTGGCATTTTAATTGTTTGTGTTCAAGTTGTAACAA CTTGCCTTTTCCATAACAGGTTGCAATCATTTGTAATCATCAACGTAGCGTTTCAAAATCTCACGATACACAAATGACAA GGTTAAATGAAAAGCTTGATGAACTTCAGGTAACGAGAATATCTGAAAATTGTTAACCTTGGGTTGGATGATTGAATTTA GAGTTGATTTGGTTTTTAAGACCTTTTAACATATTATTGGAGGTGGCTTAATCTTTTGGTTGTAGGCTGTTCTGAAGGAG CTAAGAACGGATTTGGACAGGGCTAGGAAAGGAAAGCCCCCTTCAAAGAGTCCAGATGGAAAGAAGAAGAAGAACTTGTC TTCCGAAGCGTAACTTATCTTTCTTAACTTCCTTTTACCATTTCATGTTTAAAGGTGATGTATGATTGTGGTTTATGCAA TATACAGGCTAGAGAAAAAGATATCTCAAACCAATGCAAAGATTGAGAAAATGCAGCGTGATATGAAGACAAAAGAAGAT CTCAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGATCCCAGGATTACAGTCGCCTGGTGCAAGAGACACGA GGTTCCTATTGAAAAGGTGTTGGCTTCTTCACTTTTTAGATTAAAGTGATTGGTATTCTGTGAAGTTACAATCTTTTTTT GGATTATGTCTGCTTATCTTGAACCGAGAAAAACAAACAAATAAAAGTATCAAGGATTGGAGAGCATGAGGTCCAGGACT CTCTGTGTACTTCCTTACTGATGGGTGTGCATTTGGGTAGATAGCTTAGTGGCAGTAAGCACCTATCACCTAAGTATTAT TCATAAGCTCAAAACATCTTATAGGTAGATATAGGGTGTGTTTGGGTTACAGGTTAATTAAACCTTATTGCATAAGCACT TATTCATAAGCTAATTTGATAAGCTTATAGAAATAAGCTCAAATAAGTTATACGTAGGTATAAGAGCTTGTTCAAAACAT CTTATACATACGTCATAAGCTATTTACATAAGTTCTCCAAAATACTTGCATAAGCACTTATGCTATGAGATTAGTTATAA CAAGCTCTTCCGAACGGACACATAAGCACTTATTCATAAAAATAACCTCAAAACAGCTTATAGGTATGCCATAAGCTATT TTCATAAGCTTATCCAAACATTTGCTTAAGATTAGCTCAAATAAGCTCTTCCAGCCTAAGTATATGTGCCTGGAGCAGTA ACTTCATAGGATTGGGCTGGATACTGCATATTCATTCTTGCTCTCATGTGTGGTCAAACTGACATAGCTTTGATCTGATG CTTGATTAGCTGCATCTCTTTTTGTTACTAATCTGTTGCACTTAATTACCTGGGATTTCAGATTTTCAACAAGTCTCTGC TGGCAAAGTTCACTTGGGCTATGGATGTGGACCCTGACTTCAGATTCTGA
CDS sequence (LotjaGi3g1v0544200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGCGGTCATGCGAGATACAGATTACATGCTGAAAGATAAGTTCAAGGAAAATTTCTGGAACGACTGGCGAAAGTT GCTAGGAAAAAATCATGTAATTCAGAACTTAAAGGATTGTGACTTTACCCCGATCTATGACTGGTGCCAAACTGAAAAGG AAAAGAAGAAACAAATGACTACAGAAGAGAAGAAGGCTCTGAAGGAAGAGAAAACAAAGCAAGAGGAGAAATACACGTGG GCTATTGTGGATGGTGTTAAAGAGAAGGTTGGAAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGTGGAGAGCA TCCCAAGATGGGAAAATTGAAAAGACGCATTCGTCCTAGTGATATCGTAATTAATATTGGAAAGGATGCACCAATTCCTG AATGTCCTATTCCTGGTGAAAGGTGGAAGGAGATAAGACATGACAATACAGTTACATGGTTAGCCTTCTGGAATGATCCG ATCAATCCAAAGTTGTTCAAGTATGTGTTTCTGGCAGCTAGTAGTTCCTTGAAGGGCCAAAGTGACAAGGAAAAGTATGA GAAAGCTAGGATGTTGAAGGATTATATAGGGAACATTAGAGCGGCATACACGAAAGATTTTACAAGTAAAGATATTACGA AGCAGCAAATAGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCT GATACTGTTGGTTGCTGCACATTAAAAGTGGAGAATGTGACAAGAGAAGCCCCCAACAAGTTGAAGTTTAACTTCCTTGG TAAAGATTCAATCAAGTATGAAAATACAGTTGAGGTCGAGCTTCCTGTTTACAATGCAATATTGAAGTTCCAAAAAGATA AAAAGGGTGGTGATGATCTTTTTGACATGTTGGATACAAGTAAATTAAATGCACATCTGAAGGAACTCATGCCTGGTCTA ACAGCAAAAGTCTTCCGTACATTCAATGCATCTATCACATTGGATGATATGTTGAATAAGGACACTAAAGATGGAGATGT TGGGGAAAAGATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCAATCATTTGTAATCATCAACGTAGCGTTTCAAAAT CTCACGATACACAAATGACAAGGTTAAATGAAAAGCTTGATGAACTTCAGGCTGTTCTGAAGGAGCTAAGAACGGATTTG GACAGGGCTAGGAAAGGAAAGCCCCCTTCAAAGAGTCCAGATGGAAAGAAGAAGAAGAACTTGTCTTCCGAAGCGCTAGA GAAAAAGATATCTCAAACCAATGCAAAGATTGAGAAAATGCAGCGTGATATGAAGACAAAAGAAGATCTCAAAACTGTGG CATTAGGCACATCCAAGATAAACTACCTTGATCCCAGGATTACAGTCGCCTGGTGCAAGAGACACGAGGTTCCTATTGAA AAGATTTTCAACAAGTCTCTGCTGGCAAAGTTCACTTGGGCTATGGATGTGGACCCTGACTTCAGATTCTGA
Protein sequence (LotjaGi3g1v0544200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYAVMRDTDYMLKDKFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYDWCQTEKEKKKQMTTEEKKALKEEKTKQEEKYTW AIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPECPIPGERWKEIRHDNTVTWLAFWNDP INPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEA DTVGCCTLKVENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAHLKELMPGL TAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDTQMTRLNEKLDELQAVLKELRTDL DRARKGKPPSKSPDGKKKKNLSSEALEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIE KIFNKSLLAKFTWAMDVDPDFRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 173 | 173 | 7.46E-77 | ||
| Gene3D | 1 | 59 | 59 | 3.9E-73 | ||
| Pfam | 1 | 171 | 171 | 1.8E-73 | ||
| PANTHER | 1 | 503 | 503 | 0.0 | – | |
| PANTHER | 1 | 503 | 503 | 0.0 | – | |
| Coils | 50 | 77 | 28 | - | – | |
| Gene3D | 60 | 171 | 112 | 3.9E-73 | ||
| PRINTS | 100 | 109 | 10 | 9.8E-48 | ||
| SMART | 100 | 476 | 377 | 1.9E-265 | ||
| SUPERFAMILY | 174 | 500 | 327 | 7.77E-87 | ||
| Gene3D | 174 | 322 | 149 | 9.4E-59 | ||
| Pfam | 174 | 398 | 225 | 3.3E-91 | ||
| CDD | 180 | 373 | 194 | 3.32811E-79 | ||
| PRINTS | 216 | 235 | 20 | 9.8E-48 | ||
| PRINTS | 239 | 253 | 15 | 9.8E-48 | ||
| PRINTS | 261 | 277 | 17 | 9.8E-48 | ||
| PRINTS | 319 | 333 | 15 | 9.8E-48 | ||
| Gene3D | 323 | 503 | 181 | 2.4E-70 | ||
| Coils | 372 | 406 | 35 | - | – | |
| MobiDBLite | 398 | 424 | 27 | - | – | |
| Coils | 423 | 450 | 28 | - | – | |
| Pfam | 435 | 503 | 69 | 5.1E-36 | ||
| ProSitePatterns | 449 | 467 | 19 | - | ||
| PRINTS | 456 | 467 | 12 | 9.8E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA topoisomerase type I activity | Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle. | ||
| Cellular component | Chromosome | A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information. | ||
| Biological process | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
Expression pattern of LotjaGi3g1v0544200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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