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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0544700 |
| Transcript ID | LotjaGi3g1v0544700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A072UAB3|A0A072UAB3_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi3g1v0544700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96073273..96080357) extracted from Lotus japonicus Gifu genome v1.2.
GCCCACGAAAAAATAATCAATCTTGTATAAATAAATAAATAAATAAATAGTTTGTAGATGTGGAAAGTTTGAGAACATTA AGATTAGGTTTGGTATTTGGGAACAACCAAGCCAAGCCACCAACCTTGTTCGTTCCTCTTTGATTGATTGATGGAAATCG TAACCGATGTTTTCCCTTCCGAACTCGTAATAGAAATCTTGTCATGGCTTCCTGTGTTGAGCTTGATACGATTCAAGTGC GTTTGCAAGTCATGGAAATCCCTCATCTCTCACAACAAAGCATTCGCCAAACTGCAATTGGAGAGAACATCGCTCAAAAT CAACCACGTAATCCTCACCTCCTCTGACTCCTCCTTCATTCCGTGCTCTCTGCCTCGCTTGCTCGAGGAGCCTTCGTCGA TTATGGACCAGGACCAGGACAGGTGCCTCCGTTTGGACAAGTTCGAGTACAACGAGGTCATTGGATCATGTAACGGTTTG ATCTGTTTGCACGCCGATTATTGTGCTCCTGGCTTCTGTTTCCGGCCCTGTAACCCTTCCACGCGCTTGAGGTTCGACAA GTCACCACCCTTAGCCTCAATGGGTTCCAGTCTCAATTTTGGGTTCGGTTATGATGTTTCATGTGACACTTACAAGGTCA GTTCAAATTTCAATATCAATTTAATTAATAACTTTGATTCACTCATGTTATCATTTATTATATTATTCTCTCTTTGCTAG GTTGTGGTGGTGGTGTCTCAGCTTCGTCTTCGGGGTCTAAGACTGTGCAAAACAATGCTTCATTCCATCGGTGATACTTG TTGGAGAGAGATTTTGAGCGTCCCTGACGTCCCAATTGAGTTTCGTCAAATCAATGGACTGTTTGTAGGTGGCTGTGTTA ATTGGTTAGCAAACAAATTCGAGCCATTTGAGCAGTTGGTGATTGTTTCCCTTGACATGCGTCAAGAGGCATACCGGTTA TTGTCACTACCTCAGGGTACTTCTGAGCTGCCTTCTGCTGAGATACAGGTTTTGGGGAATTGCCTTTGCCTTTTTTATGA CTTTAAGAGAACCCATTTTGTTGCCTGGAAAATGAGTGAGTATGGAGTTCCAGAGTCTTGGACTCCTTTGCTGACTATCA GTTACGAACATCTTCGATGGGATCATCGTTTTTATCTTAATCAATGGCTCATATGCTTGTGTGGAGATGGACACATCTTT ATGCTCGCCAAAAAACAGAAATTGGTTATCATATATAATCTAAGTGATAATAGTGTGAAATATGTTGAACTTGCCAGCAA CAAACTTTGGTTGGATGCCAATGATTATGTAGAGAGTCTGGTTTCACCATGTTAAGATTAAGCTCATCCGTGACAGTTTG TTTTTCCCAATTTATCTTTAATTATTATGTTATGTAAGAGGTGATTACTGTTATTTAACTTTAATAAATTTACTAATTCG TCACTGACTTTATTGGCTGTTGTTAAGCTTCTTTGGTGCTTCAAAAGGTCGCAGATTAAGATGCTAGTTATTATAATTTG GACATATGCTTAGATAAAAGTGATTACTTTTAGAACATAATTTGTTGATTTTTTTTTATAAGCACATAATTTGTTGATAA TTCCATATAGTTAGTTATTTTGTGTTTATCTAAACTGAAAACTTATTTGTTTGCATAAGCGGATTATTTTAGCTAAAATA TATTAAAACCATTCAAATTGTAAGGTGTGATTGATAGTACAAAATAATTTATCTACCCTACTTAAATGCAGAAAAAGGCT AAACAACAGTGACAATTAAGAAAAGTAGCAGAGCAGATAATCATAACAGATCAGTTCAAAAGGATTAGGACACGAGCGAT TTTCATAGTAAAAGCTTGCCTTAATCTAATGCAATTGCAGATTTCATCCGAGTATTCAATTGTCATTTTTCTTATCTGCA TAGCTAGACAGCACAAGCCTTTGCAGGAGAAGGTCTTTAGTATTTATTACAACATATATATTTGCAAACAACATTTGATA AATTGTATCCAACCCCAGATTTATTTCTGAGTTGAAACTGATATAGTCAGGGAACAAGTAGTACGAGTGGTCACTGGCAG CCACCAGCTGCAAATCCAATCTTGGAATTGGCAACATCATAAGCCACCTTATATGTCTATTGGTGATAATTCCCTATAAT GGCAATGGGGTTATTTTCAGCTTCCAGCAATGGCCAAACAAGTAACTCCCTTGTCAAGTGCTATAAGGGTACTATAAGCC TTAAGTGGAAGATCAGCACCCCCACCAGATATCATTTGAATCTCAGGCATTAACACTATCCTTCAAACAAGAATCCAATA TTGAAATTCCTGGTGCTTGTGTATACTTTTTGGACATCATCATCACAAAAGAGTTGTTCTTCAGTGAGATATAAACTGGC ATAGGTAGCCTTGTAATTACTGTACCAGAGTCTATGATAGTAGGCACCTTGTAACTTGATGCTGCTACTCCCAATGGCTT TCCTCCCACAGTAATATCTGTCAACTCCAGACAATATAAGCTGGGAAGCGTTGGGTTCTTAACCAAAGGAGTGAACTCGT ATGATGATGATGATGATGATGTTGATGTCAATGACGACGTTCCAATGGACAAGAAACCTTCATCGGAAGAGTTAGGAGCA GCAAAAGATGTGGGAAGCCTTCTCGGGGAAGGCAATAGGAGAAGGCATGACCAGATTGATTTTCTGGACACTTGTGCAAA CATGGAGAGCTTGATTGTCCTGTCCACACCCAAATACACAACTTGATTATGTCTCATATGAGTCAAGGTTAGCATATCTT TGACTGAAATAACCAATTGAGAAACAAGTGTTACCAGATGCACTTAAACAACTTGGGGCATTGAGTATGGAGCCCTTGAG AGAGGAGCACTGAGAGGATGAACATGAAAAGGTTTTATGGGTCTTGGAAGTGGAAGAATTGAAGACGGGGCCAACCTGCA CATGGTATAGTATGTAACACAAGGCTGGCACTGGAGCTGGAGCCAGGAGAGAGAGCTGCCAGTGTCTACAAGCATGGTAA AATACTTAGCAGGGGTCCCAATTCCTATTTTTACATAGTAATTTCCTGAGCCTATTGACAAACCTGATTTCAATTGTGTG TTCACAAGCTTTGAATGGTTAACTAATCTAGAAGAGGCGGTAGTATCTGAATGGTTAACTAATCTGGAAAAGAGACCTGA CACGCTCCTCATCTTTTATGAACATGCCAGAGAATGAAAATGGTAATATGGATTTTAGAGAGGAGTCAAGACCTGTAACA TGATACAAATTGAGCTACATGCCAGCTTGCTTGTGCCTCAAATCACTATCTGCAAAATGGATGGTTTGCAAGTTTAGACC TCATAATTACAAGCACAAATTCAGAATTTCATTCTAATATTGAAAAAACTCTAAACATTGCTGTCTTAAATTTGGTATCA AAGGTAACATTCTTGTAAATTAAAGAAAATTAAAAACTGCTAGACAACAAAGGACACTAGAAGTTAATTATGGTGCGGCA TATTAGCATAGTACAATCTCACAATGATTTTTTTTGCTTTTCAATCAAGTTCTGAAATAGCTAGCAAGGTGTTGAGGTGC ATATGCCTTCAAATTCCTTCACTAGAGAAGATGCTATTGCAAGATGTGCCGAGAAAACAAGAAACCAGAAGAGGCTCATC CTATTTTGCTGGCTCTGCAAAATTGATTATGAGCTAGTTTCTTACTCTTCCCTCAGCAGATACATGGTACACTAGAGCAA CCAGAAACTTTTCCCTACCAATGAGGCAACTGAAAAATGTACAAAAATATTAGTTTATAGCATGGGGCCAAAGTTAAACT AGTGTCTTTAATTTGCAGCATTAGAGGATTGAATGCTTTAAATACCCTCCAACCTGTTCGATATAATTCAGTTCGTTATA TTTAATTATCTTTTATTATCTTCTGTTTTAGATAATTACTTATAGATATTGGTTTTAGATATTACTTATATTAGTAGGTT ACTTGCTAATCAAGTAACCAGATAAGATTATATTTGTTTTGTTAATTAAGGTCATATAATAGGACCAGACCGTATGTATT GTATTTTTTACGGATTTCAACAATAAAACAGGTTTTCTCCTATCTTTGTCTATCTCCCAGATTTTGTGTGTTAGTGCACT GTGAAACACTCGGACTAGATTATGTGACATGAGGTGAGGATCGCATATGCAAGAATTGGGTTATTGGGTGCAAGGATTCA GGTGCTTTCCGTGGCTTGCAGTGAGTTTCTTCCTCAAGGATGGTCTCAATGTGGCACCTTCCACTCTCCAGCTTCTTCAG AATTCCGCCAATCTTCCCATGGTTGGTACACCCCTCTACGCTGTTGTTTCAGATTCTGTCTACATCTCTGGCCAGCATCG TGTTCCTTACATCGCCATTGGAGGTAATTGATAATTTATTGTTATTGTGTGTATGATTATGAAATATGAATAGAAGGGTT TCATTCTTAGGAATAGGGTTTAATTTATTGTTAAAGCATAAAGGAAAAGGGAAGAGTAAAAAGGAGGATTGAGATTCCAG AATTTGGAATGGTTGGGTTTTCTTTGTGTATATAAAGGTATGAATGTCATTGTTGCTTGAGCATAGAGATAGAATAAGTT AACACTTTGTCAGCTTCCTTGGGAAGGAAATGTAGCATATCACAATTCCTTCTAGGAAGTAGTTAACAGATCAATGGTTT TGAATAGATTTCTTTTTTTTCATTTTTAATAGAAGAAGGGGTAGAAAGAGTGGTGATAACTAATAAGGAATCATCCTAAG AAAAACTCTTAAGAAAGCTAGAGGTCAAGCAGAAACTAAGCTAACCCCCCTAGCAAAACTAATTTCAAAATCGATCTCGT ATTCCTCTGTGAATGTGCTGTAACTCTGGGGCAGAGTAGCATTTTGCTTCTTTGAGTCTCTATTTTTTCCTCTTTTATCT GTTATTATTCTTGATTCTGTTACTATAATTAGAGCATACATTTTTCTATAACTCAAGTGTAAATACCAGGAGCTATCAGA TTCCTAGAAGTAAAGTAGTAAACAATGTCCTGAACACTAAAGAGAGGCCAAATCTGCTGTTCTGCACCAGAGTATGACTA AGGAAAAAGAGTAAAAGACCTTCCTTTAAAATCCAAGAATAGAAGTATGGTGATCTCACTGCCAATGAACATTTCCCCTC CTTATACATGGTCACTTGGGAACTGGGATAAGACGTTGTAGTTGGTTGTTGAGTGTTCGTTGATTTGAACATCAACTATT CAAAATAGAGACATTTGAATCAGCATTATCAGCTTTCCCTCTAACCAGTTGTTTTTATTATACAGAAACCAGATACTGTT TTTAAATTTTTTAGTAAAAAAATTCACTGACCTTGGAGCTTGTATTTTATTGTCTTCTATTGTGGACGAAGCAAAACTGA TAATAACATTTATTCAAGCCAATGCTTAGTACAGTTTCCAAGAACACAAGCAAACACCACTTGGAATTTGGAATGCTGAA AGTACTCTCTTCATTCTGAATTTGTTTATTTCAAGTGCTATTTTACTGTAGCAATTGCTAACTGGAGTCTCACTGTTAGT TTAGTTCCGATACATCCGTTCTACAGAAATATGTGTATTAGGATCGTGAACTTATACTTTATACTTTTTATCTAAAAACT TGAGTCTGCTAGTTGGTTTTACCATTGTAAATAATGAGTTTTGTTGTTTCCGTCACTCTTAGGTTTTGTGATTTCATGCG TATTATAGCTATGTTACTCCAGATTGAATGGATTTATGTGACTAAGTAGATTTCAATTCGAGTTTTCCCCAATTTCGATT CGATTTCTTGAACTAGATTAGAATTTTCAGTGATTGTTGCTAATTATTACCTTTGATTTGCCTAAATGAAGAAAAAATTA GTAAATAGATGTGTGATTTTGATGGATAATCATGTTTTACTTACTATAATCTTTCATGTAGTAATTGATTTTGATCTGTG TTGGTTACTCTGAACTCAATGGTGGTGATTTCAGTGATGTTTGATCTTGCATGGTTTGTGTAATTGCAGATGTGTATGAT CCATTTTCTCCAACTAGGAGCTTGTTCCAGGTTCTGAACACGGTGGATCAGCTCATGAACAGCCCCTTCATCACTCCTCC AACCAGGAGTCTGAGCCAGGTTTTGAACACGGTGGATCAGCTCAAGAACAACCCTCGTGGAGCTCGAAACGGCTGGGATG CGCGAGAGACAGAGGATGCTCTGCTTCTGCGTGTGAACATGCCTGGGCTGGGAAAAGAGGATGTGAAGATTGCTGTGGAG CAGAACACGCTGACCATCAGGGGTGAAGGTCCAAAGGAAAGTGAGGAGGAGGTTGGTGGTGGTCTTCGCTACACCAGCAG GATTGACTTGCCGGACAAGCTTTACAAGATTGATCAGATCAAAGCTGAGATGAAGAATGGTGTGCTCAAGGTCACTGTGC CTAAGATGAAGGAAGAGGAGAGGAGTGATGTGTTCAATGTCACGGTTGATTAGAATAACTTTTGATGATATATCAAGTGA CTTATAACTTTGTTGAATGAACTTGCTTTTTGAGGGTATTTTGTGAATGGTGTCTGTTCCTCAGTTGTTAACTTTGTTGA AAGTAATGAATTAACTTGTTGGTTAAATCTAATTCTTACCTTATGAATCAGAGGAAAATTCCAGCTCTGCTCTCAAATAT TGTTTCTTTTTTCCCAATTATAGCTGTTGATATCTGAATAACTTAATGAGTAACTCAATCCGTGATTGTCACTCTATTTT GTTGACCCCAAAAGCTCATATTTGGCCATGCCATCCATTCTCATTGTTGACCAAAATCTTAACCTTGTCTTCTTTCAGTG TGGGCCTATCCTTCGATTGACTAAAATGCCCTCTGATTTGAAGGAGTTGCTTACACTTTTGAAGTCAATGGTTAAGATAG TTTTTGAGGATATCATGATAAATACTCTTCTCTAATGAGTAATGAGTATAAATGGTAACGACGCGGTCGTGAACCTAAAT AGGGGTGGAAGCAGGGAATGGCATATAAGTGGCATATAAGTGAAC
CDS sequence (LotjaGi3g1v0544700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATCGTAACCGATGTTTTCCCTTCCGAACTCGTAATAGAAATCTTGTCATGGCTTCCTGTGTTGAGCTTGATACG ATTCAAGTGCGTTTGCAAGTCATGGAAATCCCTCATCTCTCACAACAAAGCATTCGCCAAACTGCAATTGGAGAGAACAT CGCTCAAAATCAACCACGTAATCCTCACCTCCTCTGACTCCTCCTTCATTCCGTGCTCTCTGCCTCGCTTGCTCGAGGAG CCTTCGTCGATTATGGACCAGGACCAGGACAGGTGCCTCCGTTTGGACAAGTTCGAGTACAACGAGGTCATTGGATCATG TAACGGTTTGATCTGTTTGCACGCCGATTATTGTGCTCCTGGCTTCTGTTTCCGGCCCTGTAACCCTTCCACGCGCTTGA GGTTCGACAAGTCACCACCCTTAGCCTCAATGGGTTCCAGTCTCAATTTTGGGTTCGGTTATGATGTTTCATGTGACACT TACAAGGTTGTGGTGGTGGTGTCTCAGCTTCGTCTTCGGGGTCTAAGACTGTGCAAAACAATGCTTCATTCCATCGGTGA TACTTGTTGGAGAGAGATTTTGAGCGTCCCTGACGTCCCAATTGAGTTTCGTCAAATCAATGGACTGTTTGTAGGTGGCT GTGTTAATTGGTTAGCAAACAAATTCGAGCCATTTGAGCAGTTGGTGATTGTTTCCCTTGACATGCGTCAAGAGGCATAC CGGTTATTGTCACTACCTCAGGGTACTTCTGAGCTGCCTTCTGCTGAGATACAGGTTTTGGGGAATTGCCTTTGCCTTTT TTATGACTTTAAGAGAACCCATTTTGTTGCCTGGAAAATGAGTGAGTATGGAGTTCCAGAGTCTTGGACTCCTTTGCTGA CTATCAGTTACGAACATCTTCGATGGGATCATCGTTTTTATCTTAATCAATGGCTCATATGCTTGTGTGGAGATGGACAC ATCTTTATGCTCGCCAAAAAACAGAAATTGGTTATCATATATAATCTAAGTGATAATAGTGTGAAATATGTTGAACTTGC CAGCAACAAACTTTGGTTGGATGCCAATGATTATGTAGAGAGTCTGGTTTCACCATGTTAA
Protein sequence (LotjaGi3g1v0544700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIVTDVFPSELVIEILSWLPVLSLIRFKCVCKSWKSLISHNKAFAKLQLERTSLKINHVILTSSDSSFIPCSLPRLLEE PSSIMDQDQDRCLRLDKFEYNEVIGSCNGLICLHADYCAPGFCFRPCNPSTRLRFDKSPPLASMGSSLNFGFGYDVSCDT YKVVVVVSQLRLRGLRLCKTMLHSIGDTCWREILSVPDVPIEFRQINGLFVGGCVNWLANKFEPFEQLVIVSLDMRQEAY RLLSLPQGTSELPSAEIQVLGNCLCLFYDFKRTHFVAWKMSEYGVPESWTPLLTISYEHLRWDHRFYLNQWLICLCGDGH IFMLAKKQKLVIIYNLSDNSVKYVELASNKLWLDANDYVESLVSPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 48 | 47 | 11.511 | ||
| Gene3D | 3 | 45 | 43 | 1.4E-9 | – | |
| SUPERFAMILY | 6 | 55 | 50 | 8.24E-13 | ||
| SMART | 8 | 48 | 41 | 3.1E-7 | ||
| Pfam | 9 | 43 | 35 | 1.8E-8 | ||
| PANTHER | 13 | 336 | 324 | 1.2E-41 | – | |
| PANTHER | 13 | 336 | 324 | 1.2E-41 | – | |
| TIGRFAM | 105 | 338 | 234 | 1.2E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0544700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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