Transcript — View — Lotus Base

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LotjaGi3g1v0544900.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0544900
Transcript ID	LotjaGi3g1v0544900.2
Related isoforms 1	LotjaGi3g1v0544900.1
Lotus japonicus genome version	Gifu v1.2
Description	LUC7; TAIR: AT5G51410.1 LUC7 N terminus domain-containing protein; Swiss-Prot: sp\|Q3SX41\|LC7L3_BOVIN Luc7-like protein 3; TrEMBL-Plants: tr\|I3T676\|I3T676_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0544900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:96101118..96103525) extracted from Lotus japonicus Gifu genome v1.2.

ATGGACGCTCAGAGAGCTTTGCTTGACGAACTCATGGGATCAGGTACCTTCTTCACTCCGCGATTCTCAATTGTTACTGG ATTTTGTTTCTTCAATTCACGAAATCGACTACTTCGAATTTGATTTGTTTTTTTGTGGTTAAATTCAGCTCGTAACTTGA CGGAGGAAGAGAGGAAGGGTTTCAAGGAAGTCTCCTGGGACGACAAGGAAGTGTGTGGATTCTACATGGTTCGGTTTTGC CCTCATGATCTCTTCGTCAACACCCGAAGTGATTTGGGTGCGTTTCGTTCTGATTGCAATTGCTTTATGGGAATGCCTGC TTCAATTGATCTATTCCATAACAATTTTTGAAATCACTGTGTTGATCATTGATCAATTCTACTATACTGTGTTGCTTCCT ATATTAGATTGTTAACTTCTGGGAATAGAATAATGTAGAGAACCAATGACTTGATTTTAAAGCATTTTGAATGAGGGTTT GATGAATTCATAGGAAATTTTCAGGGGGAAGGTCCTATAATATATTTGCTGAATTTCCTCTGCAACCACATGGAATTTTG ATATTTTTACTGTGATAACTGTGACTGGACATTTCCTTGTTTTATATTGTTTAAATCTAATGTGCGTTAACTTACTTGAC GCAGGACCTTGCCCGAGAATACATGACCAGAAATTGAAAGAAAGGTGAACAAATAAATTTATTCATGTGAAATTTAGGTT TTGTTGATGACAGCATGGAATTCTGATGGTCGTCTGCTTTAGTCTTATTTAATCTTTTTGCACCTATTCTAAGTAAATTA ATGAGAAAACTATTACGTTTCTGATTTTTAGGCACGTCTGCGTGAAGATGTAATTTTGTTTTGTTTAGACAAAGGCTTTT ATTGAAAAAAGTCCTTAGTAGTCTTCTAATACGTGATTGAGCTAGAATAGTGTTGTGTTGCACTTAGATTTCACCGTAAA GTAGGTCCTAGCATTTATTGTTGTTAACCCTTCTAAAGTTTAATGACCATATTCAATATAAATTATATGTTTCCCGGTGC TATGGTCATTTGTTACCTAAGTTGCTTCTGCGCACATATTTTCTATTCTGTACAGATTTTACTTTGTCAATTATTTACAT GCGATTGCAAGATATATCAATAAATGAAAACACAAATTTCAGTACATTTTTTTTCCATGTTACAATTGTTTAGATGAGTT ATGATTTAATGGGCTTTACTGTGTTGGTGACATCAGTTTTGAAAAATCCCCAAGACATGATGCATTTGTACCCAAATTTG AGGCTGAACTTGCTCAGTTTTGTGAGAAATTGGTAGGTCACCCACCTATTGCTATTCCCCCTCAACACTCAAAGGAGTTT ACTGTTGTTTGATAAATCATTCTTTATATTTTCTATTAATAATCATAGGTGATGGACTTGGATAGAAAAGTAAGACGTGG GCGAGAACGTCTTTCTCAAGAGGTGGAGCCACCACCACCACCACCTCTGACAGCTGAAAAATCTGAACAGCTATCTGTGC TGGAGGAGAAAATAAAGAACCTTCTGGAACAAGTTGAATCTCTTGGTGAAGCTGGGAAAGTTGATGAAGCTGAAGCTCTA ATGAGAAAGGTAGTGAAAATGATGCTAACCCTATCTTCTCTTGAATATACTACTGATGATTTATTAAGTTTCTGTGGACC CAGTCACAAAAATGAACTAATTAAGATTTATCTTTGAGAGATTTGGAAAACCTTCAGTCTGATTCACATGATTTTTTTTT TGGGCGGGGGTTTCTCTTGCAGGTGGATACACTTAATACTGAGAAGACAGCCTTGACACAACCTCAAAATGAGAAGTTAA TGCAAGCGCAGGAGAAGAAAATGGCACTTTGTGAGATCTGTGGTTCCTTTCTTGTGGCAAATGATGCTGCAGAGAGGACT CAGTCTCATGTCACAGGAAAGCAGCATGTTGGTTATGGCATGGTTCGCGACTTCATAAGTGAGTTTCAGGTGAGTTTTGT TTTCCTGAACTATTTTGCGAATGAAAATTTATAAAATCTTTCTTGTTATAAGTTAGCATTGTATTTCAGACTGCTAAGGA GAAAGCTATTGAAGAAGAGAGATTAGCTCGGGAAAGAGAGGCAGAAGAGCGAAGAAAACGGAAGGAGCAGGAGTATGAGA GAAAGAGACGAGGTGATTCAAGTGATAGGGAGAAGCATCGTGATAAGGATCGAGATAGGGAGCGGGATAGGTATAGAGAT AGAGACTCAGACCGTGAAAGGTCTCGGGAGCGTGATGTTAGAGGTTATCGAGATGGTGGAAGGGGGGTGGACTCTAGATT GGGAAATAGAAGAAATGGAGGCAGGGACAGGTACCGTGATCGGAGCAGGTCTCGCTCCCCAGTTAAGAACAGCTACAGAA GGTCTTGA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0544900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACGCTCAGAGAGCTTTGCTTGACGAACTCATGGGATCAGCTCGTAACTTGACGGAGGAAGAGAGGAAGGGTTTCAA GGAAGTCTCCTGGGACGACAAGGAAGTGTGTGGATTCTACATGGTTCGGTTTTGCCCTCATGATCTCTTCGTCAACACCC GAAGTGATTTGGGACCTTGCCCGAGAATACATGACCAGAAATTGAAAGAAAGTTTTGAAAAATCCCCAAGACATGATGCA TTTGTACCCAAATTTGAGGCTGAACTTGCTCAGTTTTGTGAGAAATTGGTGATGGACTTGGATAGAAAAGTAAGACGTGG GCGAGAACGTCTTTCTCAAGAGGTGGAGCCACCACCACCACCACCTCTGACAGCTGAAAAATCTGAACAGCTATCTGTGC TGGAGGAGAAAATAAAGAACCTTCTGGAACAAGTTGAATCTCTTGGTGAAGCTGGGAAAGTTGATGAAGCTGAAGCTCTA ATGAGAAAGGTGGATACACTTAATACTGAGAAGACAGCCTTGACACAACCTCAAAATGAGAAGTTAATGCAAGCGCAGGA GAAGAAAATGGCACTTTGTGAGATCTGTGGTTCCTTTCTTGTGGCAAATGATGCTGCAGAGAGGACTCAGTCTCATGTCA CAGGAAAGCAGCATGTTGGTTATGGCATGGTTCGCGACTTCATAAGTGAGTTTCAGACTGCTAAGGAGAAAGCTATTGAA GAAGAGAGATTAGCTCGGGAAAGAGAGGCAGAAGAGCGAAGAAAACGGAAGGAGCAGGAGTATGAGAGAAAGAGACGAGG TGATTCAAGTGATAGGGAGAAGCATCGTGATAAGGATCGAGATAGGGAGCGGGATAGGTATAGAGATAGAGACTCAGACC GTGAAAGGTCTCGGGAGCGTGATGTTAGAGGTTATCGAGATGGTGGAAGGGGGGTGGACTCTAGATTGGGAAATAGAAGA AATGGAGGCAGGGACAGGTACCGTGATCGGAGCAGGTCTCGCTCCCCAGTTAAGAACAGCTACAGAAGGTCTTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0544900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDAQRALLDELMGSARNLTEEERKGFKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDA FVPKFEAELAQFCEKLVMDLDRKVRRGRERLSQEVEPPPPPPLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEAL MRKVDTLNTEKTALTQPQNEKLMQAQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFISEFQTAKEKAIE EERLAREREAEERRKRKEQEYERKRRGDSSDREKHRDKDRDRERDRYRDRDSDRERSRERDVRGYRDGGRGVDSRLGNRR NGGRDRYRDRSRSRSPVKNSYRRS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12375:SF43 View details on PTHR12375:SF43 Search for proteins/transripts with this domain View external data on PTHR12375:SF43	1	342	342	2.2E-126	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	1	21	21	-	–
PANTHER	PTHR12375 View details on PTHR12375 Search for proteins/transripts with this domain View external data on PTHR12375	1	342	342	2.2E-126	IPR004882 Show description in modal box View details on IPR004882 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03194 View details on PF03194 Search for proteins/transripts with this domain View external data on PF03194	2	248	247	8.9E-85	IPR004882 Show description in modal box View details on IPR004882 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	124	151	28	-	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	234	267	34	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	245	344	100	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	245	336	92	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003729 View details of GO:0003729 AmiGO InterPro QuickGO	Molecular function	MRNA binding	Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.	Subterm of View details of GO:0003723
GO:0005685 View details of GO:0005685 AmiGO InterPro QuickGO	Cellular component	U1 snRNP	A ribonucleoprotein complex that contains small nuclear RNA U1.	Subterm of View details of GO:0097525
GO:0006376 View details of GO:0006376 AmiGO InterPro QuickGO	Biological process	MRNA splice site selection	Selection of a splice site by components of the assembling spliceosome.	Subterm of View details of GO:0022618 Part of View details of GO:0000245

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0544900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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