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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0545700 |
| Transcript ID | LotjaGi3g1v0545700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT3G51930.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|O48716|JGB_ARATH Protein JINGUBANG; TrEMBL-Plants: tr|A0A0L9V892|A0A0L9V892_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0545700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96181736..96183150) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCAACCGCTCCTCCTCCCCCTCAACCCATTGCCCATCCTTCAATGAATCCAATGAATACCCTCGTTTCAAAATCCAA AATTTTCTCTCCTCCTTCAAGCTATACCACCAGTGGCAGTATCAGCAGCAGCGACAGCGATGAGAGCCCCATCTGCTCTC AACGAATGTCGCTGCTGTCTCTGCCACTGCCATGCAATGCCTGCACTTGCCACCGACAATTGGCCATTCTCTCAGGCCAT GTTGGCTCTGTCTCTTGCCTTGCCCTGTGTGGCGAGTTCATTCTCAGCGCTTCACAGGGCAAGGACATCATAGTGTGGCA GCAACCAGATTTGAGGGTGTTTGCCAAATTTGGTCATGGAGATGGCTCCGTCAAGGCACTTGTAACGGTCGGAAACAAGG TTTTCACGGCTCATCAAGATAGCAGGATCAGGGTTTGGAAGGTGTCAAGGAGCTCAGAGAATGTGTTCAAGCTTGTTGAC ACATTACCCACCACAAAGGACTATTTGGGGAAGTTCATGAAACAGAGCAACTATGTCCAAACCCGGAGGCACCACAAGCG TTTGTGGATTGAGCATGCTGATAGTATCTCTTGTTTAACGGTTTGTAACGGTTTGATTTATTCAGGGTCATGGGACAAGA CCCTTAAAGTGTGGAACCTCTCAGATTTGAAGTGTTTGGAGTCAATTAAAGCTCATGATGATGCAATTAATGGGTTGGTA GCAAGTAAAGGGATTGTGTATTCTGCTTCTGCTGATGGGAAGATTAAAGCTTGGGGGAGGAAGGAAGAGAAGAAGGGATT GCATTGTTTGAAAGGGGTTCTGGAGGGTCATAAAGATGTTTCCTTCAACTCTGTGATTGTTTCTGATGATGGGAAATGGG TCTATGGAGGAGGTTCTGATGGTTTTGTTATAGGTTGGGAAGGGTGTGGGAATTTTGAGAATTGGAAGATGGTTTCTGAG ACTAAGGCACATGAGATGGCTGTGTTGTGTATGTGCCTAATGGGGGATTTTTTGTGCAGTGGCTCTGCTGATAAAAGCAT CGGTATTTGGAAGAGAGAGGCTTTTGGAAAGCTTTGTAAAGTTGGGATCATAAGTGGCCATCAAGGGCCAGTGAAGTGTT TGCAAGCCTCACCCAATAGAATTGGCGGTGGCTTTTTGCTTTACAGTGGGAGCCTTGACAGAAGTGTGAGAGTATGGTGG GTTCCAAGGTATACAGAAGAAGTGGAGGACAACTCTGCGAAGTGCAAACTGAAAGAATCCTTCACCCCCATGTTAGGAAC ATGTTGAAGGCTGAATAATGAAGCGCAGGATCTTATTTTTACAGTGTCTGTGGTGCTTCCTTCTTGATTTGTTTTCTCCT CATTGGAACTTGTTATACTTTGCAGTTACTTGAGACTCAAACAACAACCAAGTGA
CDS sequence (LotjaGi3g1v0545700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCCAATGAATACCCTCGTTTCAAAATCCAAAATTTTCTCTCCTCCTTCAAGCTATACCACCAGTGGCAGTATCAG CAGCAGCGACAGCGATGAGAGCCCCATCTGCTCTCAACGAATGTCGCTGCTGTCTCTGCCACTGCCATGCAATGCCTGCA CTTGCCACCGACAATTGGCCATTCTCTCAGGCCATGTTGGCTCTGTCTCTTGCCTTGCCCTGTGTGGCGAGTTCATTCTC AGCGCTTCACAGGGCAAGGACATCATAGTGTGGCAGCAACCAGATTTGAGGGTGTTTGCCAAATTTGGTCATGGAGATGG CTCCGTCAAGGCACTTGTAACGGTCGGAAACAAGGTTTTCACGGCTCATCAAGATAGCAGGATCAGGGTTTGGAAGGTGT CAAGGAGCTCAGAGAATGTGTTCAAGCTTGTTGACACATTACCCACCACAAAGGACTATTTGGGGAAGTTCATGAAACAG AGCAACTATGTCCAAACCCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCTGATAGTATCTCTTGTTTAACGGTTTG TAACGGTTTGATTTATTCAGGGTCATGGGACAAGACCCTTAAAGTGTGGAACCTCTCAGATTTGAAGTGTTTGGAGTCAA TTAAAGCTCATGATGATGCAATTAATGGGTTGGTAGCAAGTAAAGGGATTGTGTATTCTGCTTCTGCTGATGGGAAGATT AAAGCTTGGGGGAGGAAGGAAGAGAAGAAGGGATTGCATTGTTTGAAAGGGGTTCTGGAGGGTCATAAAGATGTTTCCTT CAACTCTGTGATTGTTTCTGATGATGGGAAATGGGTCTATGGAGGAGGTTCTGATGGTTTTGTTATAGGTTGGGAAGGGT GTGGGAATTTTGAGAATTGGAAGATGGTTTCTGAGACTAAGGCACATGAGATGGCTGTGTTGTGTATGTGCCTAATGGGG GATTTTTTGTGCAGTGGCTCTGCTGATAAAAGCATCGGTATTTGGAAGAGAGAGGCTTTTGGAAAGCTTTGTAAAGTTGG GATCATAAGTGGCCATCAAGGGCCAGTGAAGTGTTTGCAAGCCTCACCCAATAGAATTGGCGGTGGCTTTTTGCTTTACA GTGGGAGCCTTGACAGAAGTGTGAGAGTATGGTGGGTTCCAAGGTATACAGAAGAAGTGGAGGACAACTCTTTACTTGAG ACTCAAACAACAACCAAGTGA
Protein sequence (LotjaGi3g1v0545700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPMNTLVSKSKIFSPPSSYTTSGSISSSDSDESPICSQRMSLLSLPLPCNACTCHRQLAILSGHVGSVSCLALCGEFIL SASQGKDIIVWQQPDLRVFAKFGHGDGSVKALVTVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQ SNYVQTRRHHKRLWIEHADSISCLTVCNGLIYSGSWDKTLKVWNLSDLKCLESIKAHDDAINGLVASKGIVYSASADGKI KAWGRKEEKKGLHCLKGVLEGHKDVSFNSVIVSDDGKWVYGGGSDGFVIGWEGCGNFENWKMVSETKAHEMAVLCMCLMG DFLCSGSADKSIGIWKREAFGKLCKVGIISGHQGPVKCLQASPNRIGGGFLLYSGSLDRSVRVWWVPRYTEEVEDNSLLE TQTTTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 394 | 387 | 6.3E-211 | – | |
| PANTHER | 8 | 394 | 387 | 6.3E-211 | – | |
| Gene3D | 48 | 160 | 113 | 1.7E-11 | ||
| SMART | 55 | 92 | 38 | 0.068 | ||
| SUPERFAMILY | 59 | 389 | 331 | 5.04E-49 | ||
| CDD | 59 | 384 | 326 | 7.21325E-42 | – | |
| ProSiteProfiles | 62 | 394 | 333 | 23.809 | ||
| SMART | 95 | 132 | 38 | 18.0 | ||
| Gene3D | 162 | 256 | 95 | 1.3E-15 | ||
| SMART | 167 | 204 | 38 | 0.014 | ||
| ProSiteProfiles | 174 | 213 | 40 | 9.205 | ||
| Pfam | 176 | 204 | 29 | 0.011 | ||
| PRINTS | 191 | 205 | 15 | 2.6E-5 | ||
| ProSitePatterns | 191 | 205 | 15 | - | ||
| SMART | 207 | 244 | 38 | 0.016 | ||
| SMART | 252 | 292 | 41 | 0.15 | ||
| Pfam | 257 | 289 | 33 | 0.013 | ||
| Gene3D | 257 | 404 | 148 | 5.9E-22 | ||
| ProSitePatterns | 279 | 293 | 15 | - | ||
| SMART | 299 | 336 | 38 | 0.0035 | ||
| PRINTS | 323 | 337 | 15 | 2.6E-5 | ||
| SMART | 342 | 385 | 44 | 5.2E-4 | ||
| Pfam | 346 | 384 | 39 | 0.0037 | ||
| ProSiteProfiles | 349 | 384 | 36 | 11.377 | ||
| PRINTS | 372 | 386 | 15 | 2.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0545700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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