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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0548300 |
| Transcript ID | LotjaGi3g1v0548300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G34160.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160; TrEMBL-Plants: tr|V7ACZ2|V7ACZ2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0548300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96502745..96504478) extracted from Lotus japonicus Gifu genome v1.2.
TCTCAGTTTCAGTTTCAGCTGGATTCATTGTTTCAGAGATGTCACTCTCTCATTCACATCAAGCAGCTTCAAGCCCATCT CATCACCACCGGAAAATTCCACTTTCACCCTTCCCGCACCAAGCTTCTCGAACTCTGCGCCATCTCCCCCGCCGCCGACC TCTCCTTCGCCGCCCAAATCTTCCGCCGAATCCAAAATCCCTCCACCAACGACTGGAATGCCGTTCTTCGTGGCCTCGCC ATGAGTCCCCAACCCACGCAGGCCATATCGTGGTACCGCAGCGTGTCACGCAGTCCCCAAAAGGTGGACGCGTTGACATG CTCCTTCGCTCTCAAGGGTTGCGCGCGCGCATTGACTTTCTCCGAGGCCACCCAGATTCATTCTCAGGTTCTGCGTTTCG GGTTTGATGCGGACACTTTGTTGGTCACCACTTTGTTGGATGTGTATGCGAAAACCGGTGATCTTGATGCTGCACAGAAG GTGTTTGATGAAATGCCAAAGCGGGACATTGCTTCCTGGAATGCTATGATTTCTGGGTTGGCGCAAGGGAGCCGACCCAA TGAAGCTATTGCATTGTTTAAAAGGATGAAGGAAGAGGGGTGGAGGCCCAATGATGTAACTGTTCTCGGTGCTCTCTCTG CTTGTTCGCAATTGGGTGCTTTGAAGCAGGGTGAGATTGTTCATGGGTATATAGTGGATGAGAAGCTAGACATGAATGTC ATTGTTTGTAACGCGGTAATTGATATGTATTCAAAGTGTGGGTTTGTTGATAAAGCTTATTCAGTCTTTCAGAACATGAG TTGCACCAAGAGTCTTATCACATGGAATACTATGATCATGGCGTTTGCAATGAATGGTGATGGATATAAGGCACTTGATC TGTTGGATCAAATGGCTCTAGATGGAGTGCATCCTGATGCGGTTTCTTATCTTGCTGCATTGTGTGCATGCAACCATGCT GGCTTGGTGGAAGAAGGGGTTAGATTGTTTGATTTGATGAAGGGATCTGTGGTGAAACCTAATATGAAACATTACGGGAG TGTTGTTGATTTGCTGGGTCGAGCCGGAAGGATCAAGGAAGCATATGATACTATAAACTCCATGCCTATGTTGCCTGATG TAGTACTCTGGCAGAGTTTGCTTGGGGCTAGCAAGACTTATGGGAATGTGGAAATGGCAGAGATGGCATCGAGGAAGCTG GTGGAGATGGGATCTAACAGCTGTGGGGATTTTGTCTTGTTATCGAACGTTTACGCTGCGCGACAGAGGTGGCATGATGT AAAGAGGGTGAGAGAAGCCATGATAACTAAAGATGTGAGGAAAGTGCCTGGATTTAGCTACACTGAAATAGATTGCAAGA TACACAAGTTTATAAATGGTGATCAGAGTCACCCAAATTGGAAAGAGATTTATGCGAAGATGGATGAGATCAAGTTTAGG ATTAAAGCCTACGGATATACAGCTAAGACTGATCTTGTGTTGCATGATATAGGGGAGGAGGACAAGGATAATGCTTTGAA TTATCACAGTGAGAAGTTAGCTGTGGCATATGGTTTAATTAGCACAGTTAATGGGACACCAATTCAAGTCATAAAGAACC TTAGAATATGTGGGGATTGTCATACTGTGATAAAAATTATATCAAATATTTATAATAGGGAGATCATTGTGCGGGATCGA GCGCGATTTCACAGATTTAAAGGGGGAGTGTGTTCTTGTAGAGATTATTGGTAA
CDS sequence (LotjaGi3g1v0548300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCCCCAACCCACGCAGGCCATATCGTGGTACCGCAGCGTGTCACGCAGTCCCCAAAAGGTGGACGCGTTGACATG CTCCTTCGCTCTCAAGGGTTGCGCGCGCGCATTGACTTTCTCCGAGGCCACCCAGATTCATTCTCAGGTTCTGCGTTTCG GGTTTGATGCGGACACTTTGTTGGTCACCACTTTGTTGGATGTGTATGCGAAAACCGGTGATCTTGATGCTGCACAGAAG GTGTTTGATGAAATGCCAAAGCGGGACATTGCTTCCTGGAATGCTATGATTTCTGGGTTGGCGCAAGGGAGCCGACCCAA TGAAGCTATTGCATTGTTTAAAAGGATGAAGGAAGAGGGGTGGAGGCCCAATGATGTAACTGTTCTCGGTGCTCTCTCTG CTTGTTCGCAATTGGGTGCTTTGAAGCAGGGTGAGATTGTTCATGGGTATATAGTGGATGAGAAGCTAGACATGAATGTC ATTGTTTGTAACGCGGTAATTGATATGTATTCAAAGTGTGGGTTTGTTGATAAAGCTTATTCAGTCTTTCAGAACATGAG TTGCACCAAGAGTCTTATCACATGGAATACTATGATCATGGCGTTTGCAATGAATGGTGATGGATATAAGGCACTTGATC TGTTGGATCAAATGGCTCTAGATGGAGTGCATCCTGATGCGGTTTCTTATCTTGCTGCATTGTGTGCATGCAACCATGCT GGCTTGGTGGAAGAAGGGGTTAGATTGTTTGATTTGATGAAGGGATCTGTGGTGAAACCTAATATGAAACATTACGGGAG TGTTGTTGATTTGCTGGGTCGAGCCGGAAGGATCAAGGAAGCATATGATACTATAAACTCCATGCCTATGTTGCCTGATG TAGTACTCTGGCAGAGTTTGCTTGGGGCTAGCAAGACTTATGGGAATGTGGAAATGGCAGAGATGGCATCGAGGAAGCTG GTGGAGATGGGATCTAACAGCTGTGGGGATTTTGTCTTGTTATCGAACGTTTACGCTGCGCGACAGAGGTGGCATGATGT AAAGAGGGTGAGAGAAGCCATGATAACTAAAGATGTGAGGAAAGTGCCTGGATTTAGCTACACTGAAATAGATTGCAAGA TACACAAGTTTATAAATGGTGATCAGAGTCACCCAAATTGGAAAGAGATTTATGCGAAGATGGATGAGATCAAGTTTAGG ATTAAAGCCTACGGATATACAGCTAAGACTGATCTTGTGTTGCATGATATAGGGGAGGAGGACAAGGATAATGCTTTGAA TTATCACAGTGAGAAGTTAGCTGTGGCATATGGTTTAATTAGCACAGTTAATGGGACACCAATTCAAGTCATAAAGAACC TTAGAATATGTGGGGATTGTCATACTGTGATAAAAATTATATCAAATATTTATAATAGGGAGATCATTGTGCGGGATCGA GCGCGATTTCACAGATTTAAAGGGGGAGTGTGTTCTTGTAGAGATTATTGGTAA
Protein sequence (LotjaGi3g1v0548300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPQPTQAISWYRSVSRSPQKVDALTCSFALKGCARALTFSEATQIHSQVLRFGFDADTLLVTTLLDVYAKTGDLDAAQK VFDEMPKRDIASWNAMISGLAQGSRPNEAIALFKRMKEEGWRPNDVTVLGALSACSQLGALKQGEIVHGYIVDEKLDMNV IVCNAVIDMYSKCGFVDKAYSVFQNMSCTKSLITWNTMIMAFAMNGDGYKALDLLDQMALDGVHPDAVSYLAALCACNHA GLVEEGVRLFDLMKGSVVKPNMKHYGSVVDLLGRAGRIKEAYDTINSMPMLPDVVLWQSLLGASKTYGNVEMAEMASRKL VEMGSNSCGDFVLLSNVYAARQRWHDVKRVREAMITKDVRKVPGFSYTEIDCKIHKFINGDQSHPNWKEIYAKMDEIKFR IKAYGYTAKTDLVLHDIGEEDKDNALNYHSEKLAVAYGLISTVNGTPIQVIKNLRICGDCHTVIKIISNIYNREIIVRDR ARFHRFKGGVCSCRDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 153 | 152 | 1.2E-29 | ||
| PANTHER | 21 | 144 | 124 | 1.3E-83 | – | |
| ProSiteProfiles | 23 | 57 | 35 | 7.465 | ||
| SUPERFAMILY | 39 | 354 | 316 | 6.88E-5 | ||
| ProSiteProfiles | 58 | 88 | 31 | 9.372 | ||
| TIGRFAM | 63 | 90 | 28 | 3.4E-4 | ||
| Pfam | 89 | 135 | 47 | 7.6E-10 | ||
| ProSiteProfiles | 89 | 123 | 35 | 13.165 | ||
| TIGRFAM | 92 | 124 | 33 | 1.6E-9 | ||
| PANTHER | 142 | 356 | 215 | 1.3E-83 | – | |
| ProSiteProfiles | 159 | 189 | 31 | 8.747 | ||
| TIGRFAM | 162 | 187 | 26 | 6.9E-5 | ||
| Pfam | 162 | 186 | 25 | 1.5E-4 | ||
| Pfam | 191 | 236 | 46 | 1.5E-7 | ||
| ProSiteProfiles | 191 | 225 | 35 | 10.611 | ||
| TIGRFAM | 193 | 227 | 35 | 1.2E-6 | ||
| Gene3D | 194 | 369 | 176 | 1.2E-29 | ||
| ProSiteProfiles | 226 | 260 | 35 | 9.295 | ||
| TIGRFAM | 228 | 261 | 34 | 6.4E-4 | ||
| ProSiteProfiles | 261 | 291 | 31 | 6.95 | ||
| Pfam | 265 | 288 | 24 | 0.27 | ||
| ProSiteProfiles | 293 | 327 | 35 | 5.996 | ||
| Pfam | 364 | 487 | 124 | 3.3E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0548300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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