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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0548700 |
| Transcript ID | LotjaGi3g1v0548700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methionine--tRNA ligase; TAIR: AT3G59980.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein 1; TrEMBL-Plants: tr|I3SGE2|I3SGE2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0548700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96528412..96533130) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTCTCTCTCTCTCTCTCTCATCATCTCATCTCATCTCATCACACAATACTCATTAAAAATGGCAAATGCTTTGAAG GGCAATGTGATGCTCTCATCCCTTGTCTCCTTACGAAGAACCACAACAACCCATTGCTCCCTTCTTCCCAAAGCCACCCG TTTCGGTTCCAAGTTCCCTTTTTTCTCACTCTCATCATCTTCATCCGCAAAAACTCCATCTGGGTTTCCTTCATTCTGCA CACTTTCTTCTTCCTCCACAGAGGAGGCAGTGACGGAGGTCACACCAGCTGGCGGCAATGGTGAAACCGAGAAGAGTGTC AGTGTTAAGGATTCGGCGGCGCTGCTTGACATAAGGGTTGGTCAAATTCTGAGAGCATGGAAACACGAAGAGGCTGATTC TCTTTATGTGGAAGAGGTTGATATTGGTGAGCCTGAACCCAGAATCATATGCAGTGGCCTTGTCAACTACATCCCTCTTG AACATCTTCAGGTTAATTCAGATTTTAATTCATTTTCAAATTTCAATATGTGAGTGAGTTTCTTCATTTTCAACTATGCA TTGGTAATGAAATATGGATTTTGGTGATAGAGGATTATTTCATTGGAAATGTTTCAACTTGGATTCCATATGTAGTAATT GTTGTGATTCACTGTATTGTATTGTTGTTCAATATGGTCTTTCTGATAAATTATAATGGTGATTACTAAGGTGTTATGCT TTGGCTATTTGGTGTCTATTCGCTAAGTGATATCTTATCTTTGTGCATTGAAGTGGTTATTTTGAATCACTGTATAACAT TTTAAGGTGCCACCCATCATAGAGGAATTAGTTCATGTTATTCTCTCTTGATACATTTGTCTATAGTTTAATATTCAAAC TTATATTCATTTGGATAGTTCTTAGTGTTAGCCGTGGATGAAATGTATCATCACTTTTATGACTGCACCTTTTCGTACCT AAGCTTCAATTTCTGAATTTAAAACTCACAATCAACATGCTATTTACTAGAAATGCACTCTCTTTATCTTCTACTTTTAC TACAAGTATACCCCAACACTGCATCAAATCAAATTAGTTTTGACATCGTTTGATTACAAACAGCCTTTTTAATTTTTATA TACTAATTTCATCATTTTTAGTACAGAACACATAGTAAGGATAAAACTTAGCCCATCAGGATTGGTGAAGAAGGCGAATT AATTGATTTAATTTATGGGAATTAGAAAGTAACTTAACAGGAGATGAGAGTATGGATAGTCATTGTGGTCAAGTTAATTA GCTTCTATAATGTCAATTGTTATTCAAGGAGAACGAAATTAGGTAGAGCTAAGTATTAAAGAGATAGATGTGATATGAAC GAAAACTGAAAGACAATTCATGACCGAGAGGAGTTAGAAATACAATGGATATGATGAGAGTGGTGAGATTCTGCTGACAT GGCGTCCAACCGCTACTGCGGTTTTCTTGATCTATCTGATTGGTCAAGGAATTAGTTATTGACTTTCTCCGACCCTTACT GTCCAACCTGAGAAGGGGGATATGACTTGGAAGCTGGCTTTTCTTGTCAGCCCAATGAACAGACAAACAGGTATCAAAAA AAGAAGGCTTAAATACTCTAGGGGTCCCTGAAATTGTACCCCGTATCAAAATAAGTCCCTGAAATTTTTTTTTCCGATTC CGGATCCCTGGAATTGTTTTTTTAATCAGAATAAGTCCCTACGCCGGAGAAGACGGTGGTTGACGACGGCGGTCATGGCG GCGCTACGACCAGGGTGTTGGGCCGGCTTCGTCTCGTCCTCAGGAACTCAGTGGTGGTGGTCTCGTGGGCTGGGTCGTCA CAGTTGAAGAGAAAAGGCCAGTCGCAAGTTGATTTCTTCTCGCCGGAATTTATGGAGCTTCTCGGTTTCTTCGTTTTAGC TTTGTTTCTTGCGATTTCTTCGCCCATATCAGATATATGAAGGTCTAGGAGTGTTTTAAACATGTTATTTCATGGTTTGT GGAAACAATGAGGAGGCAACCACTGTCTTCTCCGGCGTAGGGACTTATTTTGATCAAACAAATTTTTCTAGGGACCCGGA ATCGGAAAAAAAAATTTCAGGGACTTATTTTGATACGGGGTACAATTTCAGGGACCTACAGAGTATTTAAGCCAAAAAAG AAAGAAGAACTCATCTTTCTTTTATCACTTAGGAGCAGCCCGGCAGGATAGGAAGGCAAGTCTGTAACGGTATCTATAAA ATACCGTCTCAATTCATATGGTTGTAGCACAAGGTTAGAATTCTAGCTCTTCTAGGGTGGTATCTCACAGGAGATGATTG AATCAAAATAATTCCCTTTCAAGTTCTACTTTTGACATGGGAACTCCTCCGTCTATGATTCAACTTTTATATGGATATTC TGCCTTATGGTTGATTCTTTAATGTATGCTTACAGGGTCTATATAATTTTTGCAATGTTAATAAGAATAAAATAGAAAGA ACTGATAAAGCATGTGTTTAAGGCCAACCTTATGGGTGCTACAGACTCATTTGCGCGTTTGAAATTGTTTTGCAAAAGAA AATTATAAGATGATTGTGTCTTGTTCCAGGTGAATTTGTCATGTGGAATTTATAAATGTCGGGGACATAAACAAATTTTG CATAACTTAACTGCTCTACGTATATCACTTGATGCTGATTAAAATTTGAATTATGTCAGCAAGACACCTTGTGTGGTGCA AATAATGTATACGATGATGGGTTAGATGGACATAAATGTACATAGTTGAATTTGTGTAATTGTCTGTGTTTATCTCAACT TCGCAGAAATGGATTTGTTGATGTTTCATATTGGCATCATTTTTTTGTTCTTCTGTACAATTTAACAAATAGAAGGCAAA ATATGCAGGGCAAAAAGGTCATTGTTCTTTCCAATCTGAAGGCAAGGAATATGCGTGGTGTAAAGTCTAGTGGAATGTTG ATGGCCGCTTCTGATGCAAAGCATGAGAATGTTGAACTTCTATTCCCTCCTGAGGAAGCAACCCCTGGTGAAAGAATATG GTTTGGGTCAGAAGATGAAAAGGATAATCAACCTGCTGCTGCTGCTCCGAATCAGGCAATTCCTCTTCTTGAATAGTAAT TTATATGATTGCCTAGTTGAATATTGAAGTTCTAGAATTTAGATAACTTATCATTTCATAAATAAAGCTAATTATCTGAT AGTTTCTTGTGATAAAGCCAAATTTAGTGAAAGGAGCAAGACACATCCTTTTTTTGGTTTTGAGCGAACAAACAAGCACT TAGTCATGTTTCAAAATCGTCATGAGAATAAGTCCTCTTATGTTAGATTTGTACATACCTTGTCATGTGAAAATTGTGTG ACTTCATAGATATTAAATAAGCGAGGTCTTACGGAAATTTGTTTTTGTGTTTGAAGAGAGAAACATACATAAAATGTTCA TGTGACAAAGTAATGTGAAATCCAACATGAGAGGAATGAATCCCATTTTAGACAGTTTGATGAGATGTCCTATAGTTTAT GTGGTTCAATAGTAGTTTTTAATAGTAGATGCCTTCAATTACAGCTAGTGATTACAAAGATCTTAGACCGGGACATTGGG TTGCATTTTTCTTGAAACTGAAAAAGATAAGTGTTAGCAGCACACTATTTTAAACACACTTTTCCACTCACTCCCTAAAT TGACCTATGTTCAAAAGAGTATTACTAGCTTCTCTCTGACAAATTTACGGGGTGCATATTTATGTTTCTAATCAAGACTC TAGAAACTAAATCCTCAAGTCTATAGATCAATGAGTTTCCTTGAATGGGTGTTGTATGTAAGTCTTGTACACTGTACTTT ATGAATGGGCGTCATTACCATTTATAGAGCACAGTAATACTAGAATAACAATAAAAGTCTTAGGTCAGCTATATGGATCA CTTGATCCATATTAAAGATACACGCAGTTTTACGCTGATTGCAACAAGCCTATCACAACTTTGCTCACTTAACCGGGCTG AGGACCAGCCATGACACAACTCAATAATACTACAAGAATAGTTATAATTGTTTTTTCTCATATGTGGGTAATTTCAGAAC AAAAAGTCTAATTGTTCTGTTATATTATGCAGATACAAAAGAAAAAGATATGGGAATTGGTGCAGCCTCATCTGAAGACA GATGCTTCTTGTACTGCATTGCTAGGAGGGGTGCATGTCATGCGTACATCTCTAGGTTCAGTGGCATGCCAGTCATTGCA GAATGCAAATATCTCCTGATGAACAACCAGAGCACATGTTTGGAATTCCTTGTAGATTGATTCTAAAGCCAGAATCAATT CTAGGGAGAAGCTTCAGCGAGTAGCTTCTAGGTGCCAGAATTGATTCTAGGGAAATAGAATTTGATCCGAAAATGCTATG AATTTCTTGCTCTACATAGCCATACTGGCACTGTCTATCCATATGCTATTTTTTCTTCTTCATAATGTAATTTTTGGTAG TGTGTGAAAAATTGTTTTACATGTAGTCAATTTTGTTTAATGGTCTTAATTTATATTTAAGTGGTCTTTTTTTTTTTGGT GGAAAAGTGGTCTTCATAACAAAATGATTAACATGAAATATGGGCTCTCTTCATTTCTGATCCCATGTTTTACGCCAAAA GTCCATTAGGATTACTTGGGCTATGGGCTTTTTGTCCCAATCTTTCATTTTTATCTTAATAAAATTAAGTAAATTGGTG
CDS sequence (LotjaGi3g1v0548700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAATGCTTTGAAGGGCAATGTGATGCTCTCATCCCTTGTCTCCTTACGAAGAACCACAACAACCCATTGCTCCCT TCTTCCCAAAGCCACCCGTTTCGGTTCCAAGTTCCCTTTTTTCTCACTCTCATCATCTTCATCCGCAAAAACTCCATCTG GGTTTCCTTCATTCTGCACACTTTCTTCTTCCTCCACAGAGGAGGCAGTGACGGAGGTCACACCAGCTGGCGGCAATGGT GAAACCGAGAAGAGTGTCAGTGTTAAGGATTCGGCGGCGCTGCTTGACATAAGGGTTGGTCAAATTCTGAGAGCATGGAA ACACGAAGAGGCTGATTCTCTTTATGTGGAAGAGGTTGATATTGGTGAGCCTGAACCCAGAATCATATGCAGTGGCCTTG TCAACTACATCCCTCTTGAACATCTTCAGGGCAAAAAGGTCATTGTTCTTTCCAATCTGAAGGCAAGGAATATGCGTGGT GTAAAGTCTAGTGGAATGTTGATGGCCGCTTCTGATGCAAAGCATGAGAATGTTGAACTTCTATTCCCTCCTGAGGAAGC AACCCCTGGTGAAAGAATATGGTTTGGGTCAGAAGATGAAAAGGATAATCAACCTGCTGCTGCTGCTCCGAATCAGATAC AAAAGAAAAAGATATGGGAATTGGTGCAGCCTCATCTGAAGACAGATGCTTCTTGTACTGCATTGCTAGGAGGGGTGCAT GTCATGCGTACATCTCTAGGTTCAGTGGCATGCCAGTCATTGCAGAATGCAAATATCTCCTGA
Protein sequence (LotjaGi3g1v0548700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANALKGNVMLSSLVSLRRTTTTHCSLLPKATRFGSKFPFFSLSSSSSAKTPSGFPSFCTLSSSSTEEAVTEVTPAGGNG ETEKSVSVKDSAALLDIRVGQILRAWKHEEADSLYVEEVDIGEPEPRIICSGLVNYIPLEHLQGKKVIVLSNLKARNMRG VKSSGMLMAASDAKHENVELLFPPEEATPGERIWFGSEDEKDNQPAAAAPNQIQKKKIWELVQPHLKTDASCTALLGGVH VMRTSLGSVACQSLQNANIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 46 | 260 | 215 | 1.4E-92 | – | |
| PANTHER | 46 | 260 | 215 | 1.4E-92 | – | |
| Gene3D | 89 | 260 | 172 | 3.0E-58 | – | |
| CDD | 90 | 194 | 105 | 1.81066E-58 | – | |
| ProSiteProfiles | 91 | 194 | 104 | 32.238 | ||
| SUPERFAMILY | 91 | 252 | 162 | 2.94E-40 | ||
| Pfam | 97 | 192 | 96 | 3.5E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | TRNA binding | Interacting selectively and non-covalently with transfer RNA. |
Expression pattern of LotjaGi3g1v0548700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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