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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0551700 |
| Transcript ID | LotjaGi3g1v0551700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein mago nashi like; TAIR: AT1G02140.1 mago nashi family protein; Swiss-Prot: sp|O65806|MGN_EUPLA Protein mago nashi homolog; TrEMBL-Plants: tr|I3T8H3|I3T8H3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0551700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96872184..96877253) extracted from Lotus japonicus Gifu genome v1.2.
TTATAAACAAATCTAATTTAGAATTCTCTTTTATTCCAAAGCGTATCCATGAGCTTCATTTTCGCTTGAAGTGAAATATA ACCCTCCCCCGTCAATCCCACAAGCCGTGTTTTAAAACTCGGACTAGTCGACTAGGTCTGGATACTGGGTCATTGGCAAC AAACCCAAAAAACCGGGGTTGGGTCATTGTGTAACCCGGCCCAATCATCGTTCTCCATGTAGTTAATATCACTCCTTCTT CACAGAATCGTTGTTGCTGGTTGTAGCAGTGAAAATCAAGCATCATTCATGGCGACCGAAGAGGAGAACAATGAATTCTA CCTGAGATACTACGTCGGACACAAGGGCAAGTTCGGCCACGAATTCTTGGAGTTCGAGTTCAGACCCGACGGCAAGCTCC GTTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTAACCCCCGCCGTCCTCCGCGAG TGCCGCCGTATCATAGCCGAGAGCGAGGTGAGCTCACCGCCAAACCCTAACTCCGACGACGTCGTATATCCATCCTGTTC TCATTCTCATTGTGTTTGTTTCAGATCATGAAGGAAGATGATAACAACTGGCCCGAACCTGACCGGGTCGGGCGGCAGGA GCTTGAGATTGTGATGGGGAATGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCTCTTGTGGATGTTCAGAGCAGTG CTGATCCTGAAGGGCTTCGTATCTTTTACTATCTTGTTCAGGTGAGCTCATTTTCATTATGGCTTTTGTTTTTTCAACTC TTCTGTCTGAGCTAGAATAAGGAAAATCATAGGATTGTGTCTTGCTCCATTCCCATAATAAATTTGGAGATTATTAGTAG CTAATTTGAGAAGTTTGTTGCAATAAACTCGGAATATGTTATAGATAAGTATAAGGGTGTATGCGTAGCTAAGTGAAAAT AAGTTTATAAATGCTTATGCTACAAGATAAGCTAAAATAAGCTCTTCAAAGCTGCCCTAAATCAGGGTGAAGCTATGACT AAGGGTGTTTTTGGATTCTGGTGTGGATTAGAGTATGTAGAGCTGGCTTAATGCACCTGACTCTAATATGGATAGCGTTT GCTGAACTTGTGTGACATTCCTTCCTGACTCTACTATGTAATCTATGATGATGTTCTTGAAATGAAAGCACCTGGCCCAA CCTCTCACTCTCAGAATGACTACCATTTCTCTATTTATATTGTTGTTATGAATTTAGTTAGCTATGAGGCTGAAACTTCT GTGTAAGAAAACTTCTTTTTGTTGTGAGGAATCAGCAGCAGTGTTCTCCTTGTTCTAACAACAGCCTTGTTCAAAAGGGT ACTGTGCATTACAGTTGGCCGAACAATATTGAGTATGTAGCACACCTTGCAAGATAATCCTAATTCTATCCGTTATTCAA ATTGATTTGTGATCAGCAACTCTAGGCAAAGAAACTAAAGTTTGAATCTATGTCAGGTCTTTATTATGTAAAACCAAGGA TCACAAGTCATTATACTGTCAGGTTATGATTTGTGTATAATTTGCGGATTGTCTAGTATAGTTTGTACCAGTTTGTTGCA TGTATGGTTTGGTGTGGTGTGCATGTTTATATTTGGTTTAGGTGCTTAGGTCGTGTTAACATGTTTAAAATTGGCTGGAG TGATAAGATTTGGTTTAAGGTGTCAGGTTATGATTTGTGTATAATTTGCGGATAAATTTTGGGATTACATTCAGTTCAAG AGTTTAAATTAAACCTACTCAAGCTTTATAGTGGAGCCAAGATGGAACTTGGATCCTGAACTGTTAAAAAAGAAGTAAGA AATATAGATCCTTGAAAGATAAAGACATAAATTTGAATTCCATCTATGAGTAGAAGGTGTTGATGACTGAAGCGCATAGA CCGGTTCCTTAGTTCCCTTGCATTCAAGGGATATGAACCTATTCTTTTGAAGCACAAGTCCTTAGTCAATATTAGTACCT TCCCATTAATTTTCTGATTGCCACATTTGATTTATCTCCACTAATGCGTGTATTTTTTTTCTTATTATAATTACTTTTTG CAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATATAAGATGTTCATATTGTTAT GTGTTCATCCTCTTGTGGAATGTGTACTTGTTTAACAATTATCCTGTTTTGCTAATGGAGTCTGACGTCTGGTAGAGTGA TAGCTTCATAATTGTGAATATCACTTGGTTCTGCACTGGTTATGTGAATTGGAAATTTCTGATTTGAGTAGATGTCCCTT GTACCAAAACGTTGACCGAATTGCTTTTATATGCATGGTTTAGCTATTCTTTCTGAGTTTTGATTCATTCACACTTTCAC TTTCTCTTCCATGTCATTTCCACTCACTTTTACTTCCTATCTCTTATTCAGTTTCTCCTGCATTCAAGTAAGTTGGATTT GGAGTCACGTAATGCTTTAAATAACTACTTGAGTAAAATGTAGTTACAGTGACGATACTGGCAAGGAAAGTTTTGTTGTA CAAAATAAGTGCTCCATTTTTTTTTTCATTCTAAATAATCAGCATTAGGATTCTCACTCTTAAGCAATGAAGAATCTAGT CACAGAAATGACAACAATTTTATGATTTGGATTTTTTTCCCATTCATTTTTCCTCCTTCTCCTCTTTTGGAGTAAATGAA TTACAATGACTATGGGTTTCAAATTTCATCATCCCAAAGCTCTTCAATTGTTCTGTAGGGACTTGTGGTTTCATTAACAT GAAATTCCCCTCTCATGATCTTCAATTCCTCCAATTCCTCGATCTCCCAGATATCTTCATCATCCAATTTCAGATCAAAT GCTCCTATATTCTCCTTCATTCTTTCTTGACTGAAGCTTTTCACAATTACACTTGAGCCCATTGATAGTCCCCAATTCAA TGCAACCTTCAGAAACCACAATTAAAACATACATCAAGATGTACACAAACTACAACTTTTCGTTCTACTAATGACAAGAT TCATATCAATTGCATAATAGTATTGGTTAAATTATGCTTTGGGTTTAGTTTTACCTGTGCTGGAGTTGCTTTGTGTTTGT GGGCAATTGATTTGATGGTTGGATGATCAACCACTGCTGTAGATCCCCAAGCATTCCCTGGTCCACCAAGTGGTGAGTAA GCACTTACATGGATCTTGTGGTCTCCACATGTCTCTCTGAGCTTTCCTTGCCTCCACATTGGATGCATTTCAACCTGACA ACCAAGATTCAGTGAGTTAATATATTGCAAACAAACATACAAACAAACAAAAAGCATTATCTCAATAAGCAAAGTCGATT ATATGGACCACATTAAAGATATCAGTTTTATGTTGGTTCCCCGGAAGCCTAACAAAAGTTTTCTCCTTTATCTTGCATAC ATAGGTTGAGTGAATTACCGTTTTCACTGCTGAAAGATATCGAGTCGGTCAATTTAATCACTAAAAAAAATTACAATTTT TTTGTCTTTGAAACTGAAAAAGATGATGATCAATTCAATCATTTTTAAGGGTTGAAATAAGGTTGTCAAATGACCATATG AATCGTCTTTTTCACCTTTAAGAGATTAAATATGTAATTTCATTCTTTCATGGATTAAAGTGGCCAATCTGATATCTTTG AAAGGACCAAAATTGTGGTTTACTCATTAATAAATAGTTTACAAGTGATCCTTAAGATCAAGTTCTGTCCCGATGTATAA AAAAAATCAAGTTCTAATTACCTGGTTAACAGCTGGAGGTGTAGAAGCAAAATCTAATAGCCACTCAATTTTCTTGCTAG AGAAATTGCTAACCCCAATGCACCTACACAACCCCATTTCTAGGCACTTCTCCATCCCTGCCCATGTGGTCTCAAGGTCC AAACTTTCAAAGTCATCTTCATTAGGCACAGGGTAGTTAACCCATGGCTTCAACTTGACAGGCCAGTGCACTAGATACAT GTCAAGATATTCCATGCCCAGATTCCTGTTTTGCATTGATTCAAGTAAACAAAATGAACAAAATCAATATTAGATTTCCA ACACCGATTTTGATTCCAATCTTCAGAATCAACTTTGATATTAAAAAGATTCTATCACATAAATGTTTCTCGGCCCTATT TACAGGGCATGACATACTTATCCTGGACCACAAGCTTACTTCATTGTTTCAAAAAAAAGTTAAATTGATTTAGTTCATAA AGTATAAAAATTATCATTTTCATCCATGAAAGATAGAAGACATTCATTTTAAGCTTTTCAAGAATTAAAATTAGATTTAT AGAGGCCGTTTAATTGATCTTTAGAAAGTATGAAAAATGAGAAAATAACACTTTCCGAAACACTTACAAATTCTATTTAC TTACTCTAGAGTTCGTTTCAATGCAGAAACAGGATCATGGTGATCACTCCCCCACAGTTTTGATGTCACGAAAATGTCTT CCCTTTCTATTTCTCCCATGTAGATTGTCTCATTTAAGGCTTTCCCCACTGCTGGCTCAGAACCATATATTTTTGCTGTA TCAAAATGCCTATAACCCATCTGCAATACAAGCTAGTGTATCAATAATAAGAAAATTAAGAACAATAGAAAGCATGTCAA ATTAAATCTAGATGCCAGAATTAATTATGAAGAAAAATAAGCTGATCCAAACACGTCATTACTAGTACACAGAAGCTACT CATATCATATGAGCTCCCAGAATTGATTTTGGTTAGTACCTGAAGTGCATTGTGGATGGCATGTTCTGTTGTCCTCTTAT CATTTGGGAAGGAGTAAGTGCCAAATCCAATGAGAGGCATTGTAATGCCACAGTTCAAACGCACATGATTGTTTCTCATT CTCTCTATCCCTTTTCTTGTATGTTTCTAGCTTTCCCCCCTCTGTGTAGTGTGTTTCTAGCTTTTGCCTCTATGCTAATA AGTCTCAAACATTGGACTATTTATAGATTCAAGAAGTTAGTTTATACTAGTTACTTTATAGTTTATTCATGTCCGATTAA TATATTGCATTTTATTTTGGAAGAGATAAC
CDS sequence (LotjaGi3g1v0551700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCGAAGAGGAGAACAATGAATTCTACCTGAGATACTACGTCGGACACAAGGGCAAGTTCGGCCACGAATTCTT GGAGTTCGAGTTCAGACCCGACGGCAAGCTCCGTTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGG AGGTTTACCTAACCCCCGCCGTCCTCCGCGAGTGCCGCCGTATCATAGCCGAGAGCGAGATCATGAAGGAAGATGATAAC AACTGGCCCGAACCTGACCGGGTCGGGCGGCAGGAGCTTGAGATTGTGATGGGGAATGAGCACATCTCCTTCACCACCTC CAAGATTGGCTCTCTTGTGGATGTTCAGAGCAGTGCTGATCCTGAAGGGCTTCGTATCTTTTACTATCTTGTTCAGGATT TGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATATAA
Protein sequence (LotjaGi3g1v0551700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEEENNEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIIAESEIMKEDDN NWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 151 | 149 | 2.7E-98 | – | |
| PANTHER | 3 | 151 | 149 | 2.7E-98 | ||
| Gene3D | 5 | 151 | 147 | 4.2E-84 | ||
| SUPERFAMILY | 8 | 151 | 144 | 6.02E-76 | ||
| CDD | 9 | 151 | 143 | 3.41592E-114 | ||
| Pfam | 10 | 151 | 142 | 3.5E-79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | RNA splicing | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. | ||
| Cellular component | Exon-exon junction complex | A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay. |
Expression pattern of LotjaGi3g1v0551700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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