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GO:0008380

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description RNA splicing
Full defintion The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
Subterm of

Relationships

The relationship of GO:0008380 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0008380, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCmah

Associated Lotus transcripts 19

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0090899.1
– Small nuclear ribonucleoprotein-like protein [Medicago truncatula] gi|357521399|ref|XP_003630988.1|
GO terms
2
Lj3g3v0577110.1
– PREDICTED: protein mago nashi homolog [Cicer arietinum] gi|502132054|ref|XP_004501210.1|
GO terms
2
Lj3g3v3712340.1
– PREDICTED: protein mago nashi homolog [Cicer arietinum] gi|502132054|ref|XP_004501210.1|
GO terms
2
Lj3g3v3714370.1
– PREDICTED: protein mago nashi homolog [Cicer arietinum] gi|502132054|ref|XP_004501210.1|
GO terms
2
Lj4g3v2120380.1
– PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cicer arietinum] gi|502150256|ref|XP_004507865.1|
GO terms
1
Lj4g3v2731560.1
– PREDICTED: pre-mRNA-splicing factor 18-like [Glycine max] gi|356504933|ref|XP_003521247.1|
GO terms
2
Lj4g3v3113400.1
– PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] gi|449457536|ref|XP_004146504.1|
GO terms
2
LotjaGi1g1v0497500_LC.1
– Pre-mRNA-splicing factor 18; TAIR: AT1G54590.1 pre-mRNA-splicing factor-like protein; Swiss-Prot: sp|Q2HJ41|PRP18_BOVIN Pre-mRNA-splicing factor 18; TrEMBL-Plants: tr|I1N9I5|I1N9I5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0497500_LC
GO terms
2
LotjaGi3g1v0068100.1
– Protein mago nashi like; TAIR: AT1G02140.1 mago nashi family protein; Swiss-Prot: sp|O65806|MGN_EUPLA Protein mago nashi homolog; TrEMBL-Plants: tr|I3RZM3|I3RZM3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0068100
GO terms
2
LotjaGi3g1v0068100.2
– Protein mago nashi like; TAIR: AT1G02140.1 mago nashi family protein; Swiss-Prot: sp|O23676|MGN_ARATH Protein mago nashi homolog; TrEMBL-Plants: tr|I3RZM3|I3RZM3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0068100
GO terms
2
LotjaGi3g1v0068100.3
– Protein mago nashi like; TAIR: AT1G02140.1 mago nashi family protein; Swiss-Prot: sp|O23676|MGN_ARATH Protein mago nashi homolog; TrEMBL-Plants: tr|I1JMP2|I1JMP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0068100
GO terms
2
LotjaGi3g1v0551700.1
– Protein mago nashi like; TAIR: AT1G02140.1 mago nashi family protein; Swiss-Prot: sp|O65806|MGN_EUPLA Protein mago nashi homolog; TrEMBL-Plants: tr|I3T8H3|I3T8H3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0551700
GO terms
2
LotjaGi4g1v0302200_LC.1
– U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein; TAIR: AT5G57370.1 U4/U6.U5 small nuclear ribonucleoprotein; Swiss-Prot: sp|Q6GLZ8|SNR27_XENLA U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein; TrEMBL-Plants: tr|A0A0L9TEY8|A0A0L9TEY8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302200_LC
GO terms
1
LotjaGi4g1v0349000.1
– Small nuclear ribonucleoprotein; TAIR: AT2G47640.2 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|G7LBH6|G7LBH6_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0349000
GO terms
2
LotjaGi4g1v0349000.2
– Small nuclear ribonucleoprotein; TAIR: AT2G47640.2 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|G7LBH6|G7LBH6_MEDTR Small nuclear ribonucleoprotein; Found in the gene: LotjaGi4g1v0349000
GO terms
2
LotjaGi4g1v0393300.1
– Pre-mRNA-splicing factor 18; TAIR: AT1G03140.1 splicing factor Prp18 family protein; Swiss-Prot: sp|Q99633|PRP18_HUMAN Pre-mRNA-splicing factor 18; TrEMBL-Plants: tr|I1JNV3|I1JNV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393300
GO terms
2
LotjaGi4g1v0393500.1
– Pre-mRNA-splicing factor 18; TAIR: AT1G03140.1 splicing factor Prp18 family protein; Swiss-Prot: sp|Q8BM39|PRP18_MOUSE Pre-mRNA-splicing factor 18; TrEMBL-Plants: tr|I1JNV3|I1JNV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393500
GO terms
2
LotjaGi4g1v0458800.1
– Small nuclear ribonucleoprotein family protein; TAIR: AT2G47640.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|A0A0A0KUK4|A0A0A0KUK4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458800
GO terms
2
LotjaGi4g1v0458800.2
– Small nuclear ribonucleoprotein family protein; TAIR: AT2G47640.1 Small nuclear ribonucleoprotein family protein; Swiss-Prot: sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2; TrEMBL-Plants: tr|A0A0A0KUK4|A0A0A0KUK4_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458800
GO terms
2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0030532
Cellular component Small nuclear ribonucleoprotein complex 1 5.26