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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0556200 |
| Transcript ID | LotjaGi3g1v0556200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatidylinositol transfer protein; TAIR: AT4G09160.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; Swiss-Prot: sp|Q9M0R2|PATL5_ARATH Patellin-5; TrEMBL-Plants: tr|I1KWA0|I1KWA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97407047..97412321) extracted from Lotus japonicus Gifu genome v1.2.
AATGGACGTTTTTCGACTACGTGCCACATCAGATTTTTAGGCCAATGCCCATGACTGCACCACTCTTTCAAATTCAGTGC ATGCATGCCACATTAACCAGCCATGATTGCTATTTACTTGTGATGTAGTGCCTTCGTTAGACTTGATGGGAATTAAATAG TAAAGTAATCGTTTTACGTGGACCCCAAAATTTATCCATTCACTGTGAAAAAACTTTTAAATCTGTGACTTTCCCTCTTC AAACCTGACACCTATAAATAGTTGTGGACCTTCTCACTTCATCTTCTTCACGCTTTCAGCTTCCATTTCCGTCGTGTGAG CTTTTGACACTAAGAACCCTAAACGTTCTTGGAACAATCTGCCACTCACTTCCTTTCAGCTCCTTTGTTGCCATGGCTTC TTCTTCATCCAATGATCCTGCATTTGCTACGTCTGGCAACCAGACATTCCTCTTGTTGTTGATCTGACTGAGCTCCTAAA AGAGGGTCGTCGTGCGTATGTCCCGGAGCCGCCCAATGATGACGAAAAACGTGTCATTTAATTTGGAAATCCCAGGTACT TATCCCTCTCCAAGTTGGTGACTCTTTACATGCTTTCTTAGGTCTGTCTAAGCCTTCAAACACCAAAAACCCTATTCCTA AGAATTATGAGGATTTCCACCCTAGTGAGAAGGGCGATGAGCTTATCTTAGCCTTTAAGGATAGCTACAACATGTCATTT TTTGTTGATCCCCTTCGAGCTTATAGGTCTGCCCCTCCTAGCCCATTTTAAGACAATAGTGCATATCTCAATTGGGTCAA TAGGGTTCAGGCCGAAAAAGGGGATTTTTGGAAGGACCAAGGGATTTTCGACTTAATCCAACTGTCGAAATCTAAGGTTT CTTATAACCCTGCTATGCTTTTGAGTACTCTATTTTTCTAGGAGTGAGCCTCCAATTGTTTTCATGTTCCCTTTGGTATG ATCACTCCCACACTCCTCGACGTGGCTGCTATTACTGGTCTTCGCCCTACTGGCATTCTTTATCAAGCAAATCTCGAACC CAGAACCCCGGTTTCGCTTCTAGCTAAGTCGAGTGATGACTATAGCTTTACCAATTTCGTTAGCCTTCATAACCTTGGGT TGGTCCTGTGACTGACCAAGAAGAAGTCGAATTTCTTTTTATCTGGCTTTTAGCCCATGTTTTTTTCGCACCAAATCCCT TAAGGTTCAAATTAAATTCCTTTCTTTGGCTACCTTGATTCATGAAGGGGTCCTCATCTACCTTGGTAAGATGGTTCTTG GCAAACTCTACGAATCTTTGAGTGAAGCTGTTCAAGAGCCTTCGTGCTTCTCAGCTTGGGGGGGGGGGGGGGGGCATTTC AGAAACCACTTACTGAAACTCCTTTGAAAAAGAAATGAGATATGAGTGATATGATTTGTTATTTTGATAAAAAATGCAGA AAGAGATATAAAAAAAAGTGTGTGAAAATGAGGTGTGAATATATCATTAATTTAGAAAGTACACTCCGAGTCCGACAAGG AGATGAAGATGGTTGAACCTATAAATTCAAGTATAAAAGTGAAATAATATTTTGAATCAAAATAAATATGGTGAGTCAGT CTGTCAAATATATGAAACCTAGGATAAAAAAAAGTAGAAATTGATGATATGGATAAAGATGTGAGGGGCAGGGATGGAAT ATAAAAAGAGAATCAAGAGATAGGGGTTGGAAGAGGGCCCACAAAGTGGTGTATCTTCTGGCATACAGACTGGTTCTTCT TCTTTCTTTGTTTCCCACATCATCATCATCATTCATAAGACAAGCTAGCCCCCTTGCATCCAACCGGACCCAATCATTTT CTCTCTCTCTCTCTCAAATTTCAGCTAATCAATCACTCTCCATTTCAACTTTCTTTCTACATCCATCCATGGCTGAGGAA ACCCAAAAACCAGCTGAAGAAGTCATCGCAGCTGCCCCCTTGGACACCACGTCCAAGGACGCACCACCTGCACAAGTAGA AGAAGTCACGGAGCCAGCTGCAGCAGCAGTTGAAGAGGTGGCGGAGGAAGCAGAGAAACCAGCAGCAGCAGCAGCTGAAG ATGCTGCGGCCGAGGAGAAGAAGATATCTCAATCGGTGTCTTTCAAGGAGGAGAGCAACGTGGTCGCTGACCTCCCCGAA CCTCAGAAGAAGGCACTCGATGACCTCAAACAACTTATTCAAGATGCCCTCAACAAGCACGAGCTCTCTGCTCCCCCACC CCCCAAGGCCCCGTCACCATCCACTGAGGCCAAGAAGGACGAAGTTGCAGCTGCAGCTACAGAAGAAAAAGTAGAAGAAG AAGAAGAGAAGAAAACAGAGGAAGAAAAGAAACCTGATGAAGAAGAGAAGAAGGAAGAGGTAGTTGAAGAAGAAAAGAAA CCTGCTGAAGAAGAGAAGAAGGCCGAAGCTGAGGGTGAGGCCACAACAAGCGGTGAAGAGAAGAACGTGGTCGAAGCAGT GACGGAGGTGGTGGTAGAGGCAGGTGAAAAGACGGTGGAAGCTATTAAGGAAACCATAGTATCTGTGGTTGCTGTAGGTG AAGAAGAAGAAGGAAAGGAAGCTCCTCCTGAAATTCCTTCAGAGCCAGAGGAAGTATCAATTTGGGGAATTCCCCTGCTT GCTGATGAGAGGAGCGATGTGGTCCTCCTCAAATTCCTGAGAGCCAGGGACTTCAAGGTTAAAGATGCCTTCACCATGAT CAAAAACACGGTGCGTTGGCGCAAGGAATTCGGCATCGACGCCCTGGTCGATGAAGATCTGGGAAGTGAGTGGGACAAGG TGGTGTTCACTCAAGGACATGACAAGCTAGGCCACGCTGTTTGCTACAACGTCTTCGGTGAGTTCGAGGACAAGGAGTTG TATCAGAAAACATTCTCTGACGACGAGAAGCGCCAGAAGTTCATCAAGTGGAGGATTCAGGTGTTGGAGAAGAGTGTCAG AAAACTTGACTTCTCTCCTACTCCTACTGCTATCTCTACCATTGTTCAGGTCAATGATCTCAAAAACTCTCCTGGACTTG GCAAGTGGGAGCTCAGGCAAGCTACTAATCAGGCACTTCAACTGCTTCAAGATAACTACCCTGAGTTTGTAGCCAAACAG GTTTGTACCTTGAATTTTTAGATTCAAAGATATAATTTTCTTTTCGAATATGATTGCAATAGAACTTTCTATTCTTCATC ATATCATTGATTGATTGCTATTTTGTGTTTGTGCAGGTGTTTATCAACGTCCCTTGGTGGTACCTTGCCTTTTCTAGGAT GATCAGTCCTTTCCTGACACAGAGGACCAAGAGCAAATTCGTCTTTGCTGGCCCATCCAAATCTGCTGAAACCCTTTTCA AGTAAGCTCAGGCTACTCCTTTTACCTTACCTAGTACTGGTTGGATCATAAATACATACTAATAACGTGTGTGGATAAAC TACTAGTGATAGAAGCTTCTAACCATAATTGATTGACTTTTAGAATCCATTGTAGAAAGATTTCCAAACATAGTTTAAGT GTGTGTGTGTATGTGTGTGTTTGAATATATCATGAGCAAACTCTTATCTCACTGTCCATAAAGTTATGTTCACTTTTTAT AAGTATGCTTTAATTGATATGTATTTGGGCGTGACAGATATATAGCTCCAGAGCTAGTGCCAGTTCAATATGGAGGACTG AGCAGGGAGGGTGAACAGGAATTCACCACTGCTGACCCTGTCACTGAGGTTACAATTAAACCAGCAACAAAGCATGCTGT TGAGTTACCAGTTTCTGAGGTGAGAAATTAAACCAGATCATTCTTCAATCTCTTGTTTTCACATGATTATATTGTTCGTT ATGTAAATGTTGTCTAAATTGTTGATTGAATGTATGTGCAGAAAGGACATCTGGCTTGGGAACTCCGAGTTGTGGGTTGG GATGTGAACTATGGAGCAGAATTTGTGCCTGGTGCTGAAGATGGTTACACTGTGATAGTGCAGAAGAACAGGAAAATTGG TCCAGCTGATGAGACAGTGATCAGTAACAGCTTCAAAGTTGGCGAAGCAGGCAAGGTTGTGCTCACCATTGATAACCAAA CATCCAAGAAGAAGAAGCTCCTCTACAGGTCCAAGACCACTCCCATCTCTGACTGATAAGATAATGGCAAGGTGAAGAAT AATAAGGAAGGTGTTGAATGTGTATTTATTACATTACAAGGATAAGAACATTGTACAAGTTCCGGGCCAGGGGGGCTTAA TTCTTTTATACAGGGTTATTTTGTTCATAAATTGTTTTGTTTCAAGTCTGGGGTTGCCAATTTTATTTACAGTTAGTATC AATCAATGTGCTATTTTGTTCATCAAACATTTGTTGCGGAGATGCATCACCTGGAAGATGGTGGTGGTGGTGGAGAAAAA TGAATGACTCTTCTTGTGGACTGTGGGAGAAAAACTGTTTGCATTGTAATACTTTTTTATGACTGTAAAGTTTGTTTGAA TGTGTTAACGTATTACTTATTGGCGTAATTAATCAAAATTTAGTTCATTGTTTCTGTTATATTTCCTTTGACTTCGTTCG TAATTGAAGGGTCATTCTTGAGAATTTGGTGCTGGTATTTATCTCTATTTGGTGGAACTATCATATCATGTGTGTTTTTG TCCCCGGGACAAGGGTGCTGGCAGTGGATGTTAATGTAGATTTGGGTCATGGGTAGTCCATGATTTGATTGAGAATTCAG GGATGTTATTTTCTGCAAAGGCTTAATTACAACTTTGGTCCCCGATGTTTATCAATGCCACGATTTTGGTCCCCCACCTA ATTTAATTACATGGATGGTCCCCGCCGTTGTAGGCCGTGTGCAACGTTAGTCCTACCGTTTATTTCTTAATGGAGGAGGC TTACGTGGACGTCTAGTTTGAGAGAAAAAGGAGATCTGAGGATAGAGGAAAGCACGTGAGTATCACGTGAACTTTATATG AACCCATTATACCCAAATCTGAAATCCCAGGGATCTAAATCGCGTTACCTTCTTCGTTCCAGGGAGGTCAGGGGTTTGGG TATAATGAGTTCAGATAAGGGTCACGTGATACTCACGTGCTTCCCTCTCTCCTCATACCTCCTTTCTTTCTCCAACTGGA CGTCCACGTAAGCCTCCTCCATTAAGAAATAAACGGTTGGACTAACGTTGCACACGACCTACAACGTTAGGGACCATCCA CGTAATTAAATTAGGTGGGGGACCAAAATCGTGGCATTGGTAAACGTCGAGGACCAAAGTTGCAATTAAGCCTTC
CDS sequence (LotjaGi3g1v0556200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGGAAACCCAAAAACCAGCTGAAGAAGTCATCGCAGCTGCCCCCTTGGACACCACGTCCAAGGACGCACCACC TGCACAAGTAGAAGAAGTCACGGAGCCAGCTGCAGCAGCAGTTGAAGAGGTGGCGGAGGAAGCAGAGAAACCAGCAGCAG CAGCAGCTGAAGATGCTGCGGCCGAGGAGAAGAAGATATCTCAATCGGTGTCTTTCAAGGAGGAGAGCAACGTGGTCGCT GACCTCCCCGAACCTCAGAAGAAGGCACTCGATGACCTCAAACAACTTATTCAAGATGCCCTCAACAAGCACGAGCTCTC TGCTCCCCCACCCCCCAAGGCCCCGTCACCATCCACTGAGGCCAAGAAGGACGAAGTTGCAGCTGCAGCTACAGAAGAAA AAGTAGAAGAAGAAGAAGAGAAGAAAACAGAGGAAGAAAAGAAACCTGATGAAGAAGAGAAGAAGGAAGAGGTAGTTGAA GAAGAAAAGAAACCTGCTGAAGAAGAGAAGAAGGCCGAAGCTGAGGGTGAGGCCACAACAAGCGGTGAAGAGAAGAACGT GGTCGAAGCAGTGACGGAGGTGGTGGTAGAGGCAGGTGAAAAGACGGTGGAAGCTATTAAGGAAACCATAGTATCTGTGG TTGCTGTAGGTGAAGAAGAAGAAGGAAAGGAAGCTCCTCCTGAAATTCCTTCAGAGCCAGAGGAAGTATCAATTTGGGGA ATTCCCCTGCTTGCTGATGAGAGGAGCGATGTGGTCCTCCTCAAATTCCTGAGAGCCAGGGACTTCAAGGTTAAAGATGC CTTCACCATGATCAAAAACACGGTGCGTTGGCGCAAGGAATTCGGCATCGACGCCCTGGTCGATGAAGATCTGGGAAGTG AGTGGGACAAGGTGGTGTTCACTCAAGGACATGACAAGCTAGGCCACGCTGTTTGCTACAACGTCTTCGGTGAGTTCGAG GACAAGGAGTTGTATCAGAAAACATTCTCTGACGACGAGAAGCGCCAGAAGTTCATCAAGTGGAGGATTCAGGTGTTGGA GAAGAGTGTCAGAAAACTTGACTTCTCTCCTACTCCTACTGCTATCTCTACCATTGTTCAGGTCAATGATCTCAAAAACT CTCCTGGACTTGGCAAGTGGGAGCTCAGGCAAGCTACTAATCAGGCACTTCAACTGCTTCAAGATAACTACCCTGAGTTT GTAGCCAAACAGGTGTTTATCAACGTCCCTTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCTTTCCTGACACAGAG GACCAAGAGCAAATTCGTCTTTGCTGGCCCATCCAAATCTGCTGAAACCCTTTTCAAATATATAGCTCCAGAGCTAGTGC CAGTTCAATATGGAGGACTGAGCAGGGAGGGTGAACAGGAATTCACCACTGCTGACCCTGTCACTGAGGTTACAATTAAA CCAGCAACAAAGCATGCTGTTGAGTTACCAGTTTCTGAGAAAGGACATCTGGCTTGGGAACTCCGAGTTGTGGGTTGGGA TGTGAACTATGGAGCAGAATTTGTGCCTGGTGCTGAAGATGGTTACACTGTGATAGTGCAGAAGAACAGGAAAATTGGTC CAGCTGATGAGACAGTGATCAGTAACAGCTTCAAAGTTGGCGAAGCAGGCAAGGTTGTGCTCACCATTGATAACCAAACA TCCAAGAAGAAGAAGCTCCTCTACAGGTCCAAGACCACTCCCATCTCTGACTGA
Protein sequence (LotjaGi3g1v0556200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEETQKPAEEVIAAAPLDTTSKDAPPAQVEEVTEPAAAAVEEVAEEAEKPAAAAAEDAAAEEKKISQSVSFKEESNVVA DLPEPQKKALDDLKQLIQDALNKHELSAPPPPKAPSPSTEAKKDEVAAAATEEKVEEEEEKKTEEEKKPDEEEKKEEVVE EEKKPAEEEKKAEAEGEATTSGEEKNVVEAVTEVVVEAGEKTVEAIKETIVSVVAVGEEEEGKEAPPEIPSEPEEVSIWG IPLLADERSDVVLLKFLRARDFKVKDAFTMIKNTVRWRKEFGIDALVDEDLGSEWDKVVFTQGHDKLGHAVCYNVFGEFE DKELYQKTFSDDEKRQKFIKWRIQVLEKSVRKLDFSPTPTAISTIVQVNDLKNSPGLGKWELRQATNQALQLLQDNYPEF VAKQVFINVPWWYLAFSRMISPFLTQRTKSKFVFAGPSKSAETLFKYIAPELVPVQYGGLSREGEQEFTTADPVTEVTIK PATKHAVELPVSEKGHLAWELRVVGWDVNYGAEFVPGAEDGYTVIVQKNRKIGPADETVISNSFKVGEAGKVVLTIDNQT SKKKKLLYRSKTTPISD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 575 | 575 | 1.7E-259 | – | |
| PANTHER | 1 | 575 | 575 | 1.7E-259 | – | |
| MobiDBLite | 1 | 185 | 185 | - | – | |
| MobiDBLite | 43 | 70 | 28 | - | – | |
| SUPERFAMILY | 75 | 290 | 216 | 3.01E-16 | ||
| MobiDBLite | 85 | 99 | 15 | - | – | |
| Coils | 121 | 161 | 41 | - | – | |
| MobiDBLite | 125 | 182 | 58 | - | – | |
| Pfam | 234 | 273 | 40 | 1.6E-9 | ||
| Gene3D | 236 | 488 | 253 | 2.6E-59 | ||
| SMART | 249 | 274 | 26 | 1.3E-7 | ||
| PRINTS | 252 | 274 | 23 | 7.2E-5 | – | |
| ProSiteProfiles | 288 | 465 | 178 | 18.252 | ||
| SMART | 292 | 462 | 171 | 5.6E-32 | ||
| CDD | 294 | 460 | 167 | 3.11697E-39 | ||
| Pfam | 296 | 459 | 164 | 7.3E-28 | ||
| SUPERFAMILY | 298 | 461 | 164 | 7.59E-35 | ||
| PRINTS | 417 | 436 | 20 | 7.2E-5 | – | |
| ProSiteProfiles | 441 | 572 | 132 | 10.568 | ||
| SUPERFAMILY | 474 | 573 | 100 | 2.09E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0556200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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