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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0005200 |
| Transcript ID | LotjaGi4g1v0005200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT2G33730.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21; TrEMBL-Plants: tr|A0A1J7GI12|A0A1J7GI12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0005200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:847826..850799) extracted from Lotus japonicus Gifu genome v1.2.
AAACGAGAATTTTCTCAAATCCTGGTGGATTCCAGTTTTCTGTTACTTAGGGTTTTGTGTTTGCAAACCCTTGTGTGTTC CGTTGTGTGAGATAGAATAGAAGAGTCTGGAACTTGTCATCTGATCTGAGTTCTCTCCTCTTCCTCTACCCTTCCCCTCC TGCAATTAACCAAGCGATCTCTCTCTTTTGTTTTCTCTAGTTAACAGCAGCAACTACTAGTTAGTTCATTCCAAAATCAA ACACCATGAAACGCCCAACCGATGACGTGGCCGCAACCCTACCCAAGCCAAAGTTCCTCACTAAAGCTGAGCGCGAGGAA TTGGCCCTAAAACGCCGTCAGGATCAAATCGCCGACCAGAGGCGCCGCCATCAACAGATCCTCTCCGATTCCAATCCCCC CTCCGCCGACCCCAACCGCCGCGACCGCGATAGGGATAGGGATAGGGACCGTGACCGTGACCGTGAAAGGGACCGCGAGA GGGACAGGGACAGAGACCGCGAACGGCGAAACCGAGAGAGGGAGCGCGACGAGGAGAACAAGGCCAGGGAGCGTGCTCGC TTGGAGAAACTGGCGGAGCGGGAGCGTGAGAAGGAGCTGGATGCGATCAAGGAGCAGTACCTCGGGTCGAAGAAGCCTAA GAAGCGTGTTATCAAGCCCAGTGAGAAGTTCCGCTTCTCCTTCGATTGGGAGAACACGGAGGACACCTCGCGTGACATGA ATGCCCTCTACCAGAACCCTCACGAGGCTCAGCTTCTCTTCGGCCGTGGCTTCCGCGCCGGGATGGACCGCCGCGAGCAG AAGAAGCTTGCTGCCAAGAATGAGAAGGATATGCGGGATCAAATCCGGAAGAAGGACGGCATTGAGGAGAAGCCGGAGGA GGCGGACGCTCAGCGCCGGAAGGAGGAGGCTGCTGATATGTATGACACGTTTGACATGAGGGTGGACCGCCACTGGAGTG AGAAGAAGCTGGAGGAGATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAG ATCCCTCGCCCTATGCGGAGCTGGGATGAGAGTAGGTTGAGCCAGGAGCTCTTGAAGTCTGTTGAGAAGGCTGGTTACAA GACCCCTTCTCCTATTCAGATGGCTGCTATTCCACTTGGTCTTCAGCAGCGTGATGTCATTGGAGTTGCCGAAACCGGTT CTGGGAAAACCGCCGCTTTCGTTCTTCCCATGTTGAGTTACATCACCAGGCTTCCACCCATTAGTGAGGAGAATGAAGCT GAGGGTCCGTATGCTGTTGTCATGGCACCTACTCGTGAGCTTGCTCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCA GTATCTCGGCATCAAAGTGGTGTCTATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAGGGCTGTG AGATTGTGATTGCAACCCCTGGTCGTTTGATTGATTGCTTGGAGCGGCGCTATGCTGTTCTGAATCAATGTAATTATGTT GTCCTTGATGAGGCTGACCGCATGATTGATATGGGGTTTGAGCCCCAGGTTATGGGGGTGCTGGATGCCATGCCTTCCAG TAATCTGAAACCTGAGAATGAAGATGAGGAGCTTGACGAGAAGAAGATTTACAGGACCACTTACATGTTTAGCGCCACCA TGCCGCCTGCAGTGGAGAGGCTTGCCAGGAAGTATTTGAGGAACCCTGTTGTGGTGACCATAGGCACTGCTGGAAAAGCA ACCGAGTTGATCAGCCAGTATGTGATGATGGTGAAGGAACCTGAGAAGTTTCATAAGCTCCAGAGGTTGCTTGATGAGCT CAATGACAAGACAGCAATTGTTTTTGTCAACACCAAGAAGAATGCTGATACGGTTGCCAAGAATTTGGATAAGGACGGAT ACCGTGTGACCACTTTACATGGAGGGAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAGGGATTTAGAACCAAGAGATAC AATGTTCTTGTTGCCACTGATGTTGCTGGACGTGGTATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCC TGGGAATATTGAAATGTACACCCATCGTATTGGGCGTACTGGCCGTGCAGGGAAGACGGGTGTCGCCACTACATTCCTGA CTCTTCATGACACTGATGTTTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCA AGGCATGAAGCTTCAAAATTCAAGCCGGGAAGTATTCCCGATAGACCACCTAGGCGAAATGATACTGTATTTGCGCATTA GCTATCTTCTTTGGAGGTAGACACTTACTTTGAGGGTAATATCCAGTTTTCTGGGGTAGAACATCTTGCCTGTGATGATG CTTAGCAGCGATTTACTTTTTGCGGTTATATTTTTAGTCTTGTATAAAGCTCAATTAAAACACTTTCCTGGCATCATTGT AGTTGCTTTTGCTCTGCTTATTTGGAGCAACTATCCTGCATAATATTTCCAACAGGAATTGATAGGTTTTTTATGAGAAT ATTTTGACATTTGGCTATAATATTTGTTGTCATCTTGTGCTACAATGGTGGTTGTCTTTTCTGATTATGCTTATTGCTTT CTCCCTAACCTGTTACCAATTGTTGAGTTTGATTATGTTTGGGTTTTCCTTAAGAATTAAAACTAGTTTCTAAAAATTTG CTGATGTCTAATCAAATGCTGGATGGGATATATTTTATGTGCATCATATAGATGAACTAATAACTTATTTGTGTCTTATA TGGCTTCAGTTTTGGTTGATATCTGGTCTATCATGGGTGCCATGTCTGCAGTTATGTATTATCATCGTGGTATTCTACTG GCGCGCCTTGTATATGATAACTCGTACCATTTTTTTTTTTGTTAACACATGAAAAATTCCTTTGCAAATGCCAATTTACA TTAGCTATTTGCAC
CDS sequence (LotjaGi4g1v0005200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACGCCCAACCGATGACGTGGCCGCAACCCTACCCAAGCCAAAGTTCCTCACTAAAGCTGAGCGCGAGGAATTGGC CCTAAAACGCCGTCAGGATCAAATCGCCGACCAGAGGCGCCGCCATCAACAGATCCTCTCCGATTCCAATCCCCCCTCCG CCGACCCCAACCGCCGCGACCGCGATAGGGATAGGGATAGGGACCGTGACCGTGACCGTGAAAGGGACCGCGAGAGGGAC AGGGACAGAGACCGCGAACGGCGAAACCGAGAGAGGGAGCGCGACGAGGAGAACAAGGCCAGGGAGCGTGCTCGCTTGGA GAAACTGGCGGAGCGGGAGCGTGAGAAGGAGCTGGATGCGATCAAGGAGCAGTACCTCGGGTCGAAGAAGCCTAAGAAGC GTGTTATCAAGCCCAGTGAGAAGTTCCGCTTCTCCTTCGATTGGGAGAACACGGAGGACACCTCGCGTGACATGAATGCC CTCTACCAGAACCCTCACGAGGCTCAGCTTCTCTTCGGCCGTGGCTTCCGCGCCGGGATGGACCGCCGCGAGCAGAAGAA GCTTGCTGCCAAGAATGAGAAGGATATGCGGGATCAAATCCGGAAGAAGGACGGCATTGAGGAGAAGCCGGAGGAGGCGG ACGCTCAGCGCCGGAAGGAGGAGGCTGCTGATATGTATGACACGTTTGACATGAGGGTGGACCGCCACTGGAGTGAGAAG AAGCTGGAGGAGATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAGATCCC TCGCCCTATGCGGAGCTGGGATGAGAGTAGGTTGAGCCAGGAGCTCTTGAAGTCTGTTGAGAAGGCTGGTTACAAGACCC CTTCTCCTATTCAGATGGCTGCTATTCCACTTGGTCTTCAGCAGCGTGATGTCATTGGAGTTGCCGAAACCGGTTCTGGG AAAACCGCCGCTTTCGTTCTTCCCATGTTGAGTTACATCACCAGGCTTCCACCCATTAGTGAGGAGAATGAAGCTGAGGG TCCGTATGCTGTTGTCATGGCACCTACTCGTGAGCTTGCTCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATC TCGGCATCAAAGTGGTGTCTATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAGGGCTGTGAGATT GTGATTGCAACCCCTGGTCGTTTGATTGATTGCTTGGAGCGGCGCTATGCTGTTCTGAATCAATGTAATTATGTTGTCCT TGATGAGGCTGACCGCATGATTGATATGGGGTTTGAGCCCCAGGTTATGGGGGTGCTGGATGCCATGCCTTCCAGTAATC TGAAACCTGAGAATGAAGATGAGGAGCTTGACGAGAAGAAGATTTACAGGACCACTTACATGTTTAGCGCCACCATGCCG CCTGCAGTGGAGAGGCTTGCCAGGAAGTATTTGAGGAACCCTGTTGTGGTGACCATAGGCACTGCTGGAAAAGCAACCGA GTTGATCAGCCAGTATGTGATGATGGTGAAGGAACCTGAGAAGTTTCATAAGCTCCAGAGGTTGCTTGATGAGCTCAATG ACAAGACAGCAATTGTTTTTGTCAACACCAAGAAGAATGCTGATACGGTTGCCAAGAATTTGGATAAGGACGGATACCGT GTGACCACTTTACATGGAGGGAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAGGGATTTAGAACCAAGAGATACAATGT TCTTGTTGCCACTGATGTTGCTGGACGTGGTATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGA ATATTGAAATGTACACCCATCGTATTGGGCGTACTGGCCGTGCAGGGAAGACGGGTGTCGCCACTACATTCCTGACTCTT CATGACACTGATGTTTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCA TGAAGCTTCAAAATTCAAGCCGGGAAGTATTCCCGATAGACCACCTAGGCGAAATGATACTGTATTTGCGCATTAG
Protein sequence (LotjaGi4g1v0005200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRPTDDVAATLPKPKFLTKAEREELALKRRQDQIADQRRRHQQILSDSNPPSADPNRRDRDRDRDRDRDRDRERDRERD RDRDRERRNRERERDEENKARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNA LYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDMRDQIRKKDGIEEKPEEADAQRRKEEAADMYDTFDMRVDRHWSEK KLEEMTERDWRIFREDFNISYKGSKIPRPMRSWDESRLSQELLKSVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSG KTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEI VIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMP PAVERLARKYLRNPVVVTIGTAGKATELISQYVMMVKEPEKFHKLQRLLDELNDKTAIVFVNTKKNADTVAKNLDKDGYR VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTL HDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 114 | 114 | - | – | |
| MobiDBLite | 17 | 44 | 28 | - | – | |
| Coils | 21 | 41 | 21 | - | – | |
| MobiDBLite | 54 | 114 | 61 | - | – | |
| Coils | 83 | 119 | 37 | - | – | |
| PANTHER | 98 | 664 | 567 | 5.8E-201 | – | |
| PANTHER | 98 | 664 | 567 | 5.8E-201 | – | |
| MobiDBLite | 182 | 220 | 39 | - | – | |
| Gene3D | 232 | 501 | 270 | 5.2E-91 | – | |
| ProSiteProfiles | 271 | 299 | 29 | 11.049 | ||
| CDD | 282 | 498 | 217 | 4.63725E-145 | – | |
| SMART | 290 | 512 | 223 | 4.0E-62 | ||
| Pfam | 296 | 486 | 191 | 7.9E-50 | ||
| ProSiteProfiles | 302 | 497 | 196 | 30.767 | ||
| SUPERFAMILY | 347 | 650 | 304 | 2.54E-77 | ||
| ProSitePatterns | 426 | 434 | 9 | - | ||
| Gene3D | 502 | 690 | 189 | 1.9E-57 | – | |
| CDD | 509 | 638 | 130 | 1.51976E-63 | – | |
| Pfam | 521 | 629 | 109 | 4.8E-33 | ||
| ProSiteProfiles | 524 | 668 | 145 | 24.8 | ||
| SMART | 548 | 629 | 82 | 2.1E-36 | ||
| MobiDBLite | 659 | 691 | 33 | - | – | |
| MobiDBLite | 666 | 691 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0005200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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