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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0009500 |
| Transcript ID | LotjaGi4g1v0009500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | EH domain-containing protein 1; TAIR: AT3G20290.1 EPS15 homology domain 1; Swiss-Prot: sp|Q94CF0|EHD1_ARATH EH domain-containing protein 1; TrEMBL-Plants: tr|G7K8N7|G7K8N7_MEDTR Calcium-binding EF hand protein; Found in the gene: LotjaGi4g1v0009500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1264748..1269728) extracted from Lotus japonicus Gifu genome v1.2.
GCTAGTGGAAGACCAACGCTCTCGCTTTGTTCTCAATCAATGGAGTTCAAGCCGGTCCTATTTGGTTGGTGCTCCAAAGA GCACCATGCAATCTATCAGGAGTGGTTCAATTATGCTGATTCAGGTAACTTGCCTTTGCTCAATCCAATTCAGTTTCATT TCTGGGAACGACAGAGTCACTCACGGTGCATGCTTTGCTTTTCAGATAGCGATGGCCGCATCACCGCGAGTGATGCCACC ATGTTTTTAGCCATGTCCATTTTGTCTCGCCAAGATCTTAAGCAGGTGAGCCATACTGCTAACTATTTAAAATGACTTTC AAAAACTTAAGCCGTCAGTTAAGGGTCACATGAATGATTTTATATTATATTTGTAACAAAAGCGTTACAGCAAGTGAAAT ATTTTAACTTCTGTGGTAATGTTTGATCTTAGGCTGGTAGTGGATTAAATTTGAACATTTACACTTTTGGTTCATGTTGA AGTTGGCTTTGATTTTGTTTTGTCTCCATCAATTGGAATGGTTTGGGTTGGGTGTTTGATGATTGAGTTGTTGATATAAG TTGTGCTTATCTCCTTTGACTTAGTTCTTCCTTCCTTGTTAACTAAATTGTTTCTATGTTTGCTTCTGTTACCAAAATAA GGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATACCTTGGTTTCCAAGAGTTTATCATTGCTATGCAGGTACAAATGT ATTAGGCTCTATTGAAGTTTAATGCTGATGAATCTCTAGAGTCTTACGCATTTGAAATGTAGCTAGTTTCTTTGGCACAA TCTGGGCACCCAGTAACACATGATCTGCTGACTAGTGATGGTAAGTTATGAATATTTAAGTTTGTCTTCTAATGGTTTGT CAAATAAGCTTCTATAATTGGATTGATCAAATATTTTATGATGCACATTCTTGTGAAGTTCTATTGTCTAGATTTACCTA TTGAAAGCTTAATTTTTATTTCAGTGGATTTGAAAAACCTGAAACCACCCACAATGGGGGGTTTGGATGCATTACTAATT GTAAGTATTTCATTTAAGGTTTATTTATTTACAGTGTTAACATTTCATGTAATGAAAATTCTTATTTCTTGGCTTTGTTT ATCCAGGAGAAAAAGCATAAGCAAAAAGATTGGTTTTCTAGGAAGTTAACCAAAAGGGTAAGTGTTCTTTTACTTCTCCT TTGATATTTCAGTGCATTATCCTTATCTTCTGCTAGAGGACATATGAATTATCCTTATTTTCAACTCATGACATGCTTGA TTTACATTTTTACTGGTTTCATTTGGTGTCATCATGGTCTTGAAGTGTATCCCTGGGATCTTTGGTTTAGTTACTCTGTT TCTTCTCTTATAAGACGAATAGACGGTGATAAGTGTATGTTTAGGCAGTTATTTGGGGCTCGAACCCAACATTATCATTT GACTTGTATGTAAGTGTCTAATTGAAGTAGGCCAATGCTAATAATGTGCCAGATATTCCACAAGTGAATATGAATTTGTC AGGGAGAGTGTTGAAAAGAGAGTGTTGCTAGCATTTTTCATTTGTTAGTTTTGAATTATTTCGAGCTTCATTTTTATACT AACAAAATATGCATTTTGTCTTGTATCTATCTAATTTATTCTTTGATATTACATAAATCAAGTTGGCAGGACCCTTATGT GTCTGTGTGTTACTACTTCTTTGCAATTTCCTGTTCTTAAAAATTGTCCAGTATGTTCTTGTAGGTTTTTCACTTGAGTT TTTGTGCATATTTCCATAGGTGCCCCTTTCCTCTGTGACATCAATAATTGATGGCTTAAAGAAACTCTACATTCAGAAGT TGAGGCCGTTGGAAGTTACTTACCATTTTAATGATTTTGTATCTCCATTACTGGTCAGTAAATGAATCTGTTCAGATATA ACTGGCTACTCTAGATATCGTATTCTTTCTTTCTTAAGTCATGTTGTTGCTAGTTTTTAAATAAGGGAAAGGATACACAA TTGGGGTAAATTTTTTATTGCAACTCTTTACATATTGTAGACTGATAGCGATTTTGATGCCAAACCAATGGTTATGCTTT TGGGTCAGTACTCAACTGGTAAAACAACATTCATCAAGCATCTGCTTAAAAGTAGTTATCCAGGCAAGTAACTACCCTTG CTCTATATCCATGTGTGTGCATGTGTGGCACTGCTCATATGTGTATTATTAAAATTTGTTACTGATGTTAGTTTTCTTAT TTTTTACCATAACTATCAATAGGAGCACATATTGGACCCGAGCCTACAACTGATAGGTTTGTTGTTGTCATGGTGCGTGT CAGCCAAACCATTTCATCGCTAATGACTCTTCAATACCTTCAATAATTCCTCAGTTTTAAATTTAGAAATCGATTACTTC AAATTCCTGGCAAGATTCAACATCTTCATGGAATTTCTAAAAAATTTCCATGCACTCCCGTATCATTAGTGTCAAGTTTT GGCAATTTAAATTATTAAAGTCTTTTTAATACACCTATCAATCTAATCTTGTCATAATCTTGGAAATGAGCTATTGCACT AGCTTTAACTAGCAAATGGTACCACTGTACAGTCTGGACCTGATGAGAGAAGTATTCCTGGAAATACTGTTGCTGTCCAA GAAGACATGCCATTTAGTGGTCTTACAACTTTTGGCTCAGCTTTTTTGTCTAAGTTTGAGTGTTCACAAATGCCTCATCC TGTAAGTTGCTCTAGAGCCATTGAAAATGTTTACAAGATTTTCCTTTTGTAGCATTTGGACTTGACTATATTTCAATTCT CCAAAGCTATTGGAGCACATTACATTTTTGGACAGTCCTGGAGTTCTTTCTGGAGAAAAGCAACGGACACAGAGAGCATA TGATTTTACGGGTGTAATATCTTGGTTTGCTGCTAAGTGTGATTTGATACTCCTTTTCTTTGATCCGCACAAGCTTGATA TCAGTGATGAATTCAGTCGTGTGATAGCTTCATTACGGGGGCATCATGACAAAATTCGGGTGGTATTAAATAAGGCAGAC CAAGTTGGTACTCAACAAGTAAGAGCTTGCAATAGTTGCATACTTAAACTTCTATTTGTTTATTTAGTGAATCTTTTACT ACATGGTCAGAGGAAACATAACCTGTATTTGGCCCTATGTTGCAGCTGATGAGGGTTTATGGAGCGTTAATGTGGTCACT TGGGAAGGTGCTGAATACACCTGAAGTCATTCGTGTGTATGTTGGGTATGTCACTTCATATATGTATATATACTCCTCTG TAAATGATGAATTATTTTGACTTAGAGAACTCGAGTGTGACAACTTTGTTTCCACAAGTTTTATGAGTTCTCTGTATGAA GTATCATGCATCCTTTGTTTTTATGGTGGAAGTCTGGAAGACTTTTTTTTGCATCTTTTACTATGTTTTATGCGAGTTAG ATATGATATAACTGTCTTCCTTTTCCTTGTGGATGAGATTGCCATGTGACTTTCGGTGCTCATTTAACTTTCTTATGACA GCTCCTTCAACAACAAACCTGTAAATGATGCTATCAGTGGTCCAATTGGTAAGGAGTTCTTTGAAAAAGAACAGGAAGAC CTTCTTTCAGATCTTAAAGATATACCAAGAGTGGCTTGTGATCGAAGAGTGAGTTTGTGTGTTTGAATTTATTTTGTTTA TCACAATAATAGTTCACTAAAATGAGAGTACTTATACTTTCACGCTGATGTTAACAAAAAATTATGAAGAGTTGAAGATT TTGATATGATGAAATTACAAAGATTTAAGTATTTCTATTTGATTGTTTTTTCTTGTGGAATTAAAAAAATTAAGGGTATG TCGATTTCAGAAAATATTTTCTATTTTCACTTGTAATTACAAAAGTACAATGGTATTGTCATTTTCTTTCTTGTTTATAA AGATTTAATTTGGATAGGACAGTGAAAACTTTTTATTGGTTTTTTTCTGTTTCTGTTTGGGGAGACGGGAATAAAATGAA AATAAGGTGGTATTTTTGTAATTAAAAGTGAATACAAAAAGTCCAAACAGTCCTAATGTCTGATTTTCTTGGATGATTTT GTCCACACACAAGTCAATATCATAAAATCTCCTTTTGCTGTGGTGTAGGTTTCTAAGATGCAACTTATATATATGCTTTA TCTCATCTCTTGAATTTTAGTATCCATTAATCACTAGTGATATATTTTTCTCATGAAGTTGCTTCTTTGCTTTATTTTAT CCTTTGCACACATTGACTATTGTAGATCAATGAATTTGTAAAACGAGCCCGAGCAGCCAAGATACATGCTTACATTATCA GTCATCTTAAAAAGGAGATGCCTGTTATGATAGGCAAAGCTAAAGCACAACAAAGGCTCATTGATAATTTGTCAGACGAA TTTGGAAAGGTATGAATCCAACCCTTCCCTGGACTCTGCTATTGGCGAGTTTAATTAACATGCTTGGATCAGTTCTCACA TTCAGAAGCTACTCACAAAAACTTCTTCTCATAATTGATTTTAACTTTAGAATCCATTAATGAATGTGACTGTACATCTT TTCGGCTGACCTGCATGTCTGTTTGGATAACACTTAAAATGCATATCTTTGATATTTTGATTGTAAACTTTGAAAAAGGT ACAAAGGGTGCTCCATTTACCTCCTGGTGACTTCCCAAATGTGGAGCATTTCAGAGAGGTCTTGCGTGATAAAAATATTG ACAAGTTTGAGAAATTGAAACCAAAATTGATACAAGCAGTTGATGACATGCTAGCTTTTGACATTCCTAACCTCTTGGAG AATTTTAGGAATCCCTATGATGAAGGACGGAGTCAGAAAAAATGGACAAGGAGGGCAAAACTTTAACACGTTAACGGCTA TCTGTTTATTTGTGTATAAATAAATATAAAAAATGTGGTTCTATTCATTTTGAAAAGAACATTCCACTTTGATTTAATAT TTAATCATCTTTCAACATTAG
CDS sequence (LotjaGi4g1v0009500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTCAAGCCGGTCCTATTTGGTTGGTGCTCCAAAGAGCACCATGCAATCTATCAGGAGTGGTTCAATTATGCTGA TTCAGATAGCGATGGCCGCATCACCGCGAGTGATGCCACCATGTTTTTAGCCATGTCCATTTTGTCTCGCCAAGATCTTA AGCAGGTGTGGGCTATTGCAGATTCAAAGCGACAAGGATACCTTGGTTTCCAAGAGTTTATCATTGCTATGCAGCTAGTT TCTTTGGCACAATCTGGGCACCCAGTAACACATGATCTGCTGACTAGTGATGTGGATTTGAAAAACCTGAAACCACCCAC AATGGGGGGTTTGGATGCATTACTAATTGAGAAAAAGCATAAGCAAAAAGATTGGTTTTCTAGGAAGTTAACCAAAAGGG TGCCCCTTTCCTCTGTGACATCAATAATTGATGGCTTAAAGAAACTCTACATTCAGAAGTTGAGGCCGTTGGAAGTTACT TACCATTTTAATGATTTTGTATCTCCATTACTGACTGATAGCGATTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCA GTACTCAACTGGTAAAACAACATTCATCAAGCATCTGCTTAAAAGTAGTTATCCAGGAGCACATATTGGACCCGAGCCTA CAACTGATAGGTTTGTTGTTGTCATGTCTGGACCTGATGAGAGAAGTATTCCTGGAAATACTGTTGCTGTCCAAGAAGAC ATGCCATTTAGTGGTCTTACAACTTTTGGCTCAGCTTTTTTGTCTAAGTTTGAGTGTTCACAAATGCCTCATCCTCTATT GGAGCACATTACATTTTTGGACAGTCCTGGAGTTCTTTCTGGAGAAAAGCAACGGACACAGAGAGCATATGATTTTACGG GTGTAATATCTTGGTTTGCTGCTAAGTGTGATTTGATACTCCTTTTCTTTGATCCGCACAAGCTTGATATCAGTGATGAA TTCAGTCGTGTGATAGCTTCATTACGGGGGCATCATGACAAAATTCGGGTGGTATTAAATAAGGCAGACCAAGTTGGTAC TCAACAACTGATGAGGGTTTATGGAGCGTTAATGTGGTCACTTGGGAAGGTGCTGAATACACCTGAAGTCATTCGTGTGT ATGTTGGCTCCTTCAACAACAAACCTGTAAATGATGCTATCAGTGGTCCAATTGGTAAGGAGTTCTTTGAAAAAGAACAG GAAGACCTTCTTTCAGATCTTAAAGATATACCAAGAGTGGCTTGTGATCGAAGAATCAATGAATTTGTAAAACGAGCCCG AGCAGCCAAGATACATGCTTACATTATCAGTCATCTTAAAAAGGAGATGCCTGTTATGATAGGCAAAGCTAAAGCACAAC AAAGGCTCATTGATAATTTGTCAGACGAATTTGGAAAGGTACAAAGGGTGCTCCATTTACCTCCTGGTGACTTCCCAAAT GTGGAGCATTTCAGAGAGGTCTTGCGTGATAAAAATATTGACAAGTTTGAGAAATTGAAACCAAAATTGATACAAGCAGT TGATGACATGCTAGCTTTTGACATTCCTAACCTCTTGGAGAATTTTAGGAATCCCTATGATGAAGGACGGAGTCAGAAAA AATGGACAAGGAGGGCAAAACTTTAA
Protein sequence (LotjaGi4g1v0009500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFKPVLFGWCSKEHHAIYQEWFNYADSDSDGRITASDATMFLAMSILSRQDLKQVWAIADSKRQGYLGFQEFIIAMQLV SLAQSGHPVTHDLLTSDVDLKNLKPPTMGGLDALLIEKKHKQKDWFSRKLTKRVPLSSVTSIIDGLKKLYIQKLRPLEVT YHFNDFVSPLLTDSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQED MPFSGLTTFGSAFLSKFECSQMPHPLLEHITFLDSPGVLSGEKQRTQRAYDFTGVISWFAAKCDLILLFFDPHKLDISDE FSRVIASLRGHHDKIRVVLNKADQVGTQQLMRVYGALMWSLGKVLNTPEVIRVYVGSFNNKPVNDAISGPIGKEFFEKEQ EDLLSDLKDIPRVACDRRINEFVKRARAAKIHAYIISHLKKEMPVMIGKAKAQQRLIDNLSDEFGKVQRVLHLPPGDFPN VEHFREVLRDKNIDKFEKLKPKLIQAVDDMLAFDIPNLLENFRNPYDEGRSQKKWTRRAKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 10 | 109 | 100 | 2.1E-8 | ||
| Gene3D | 11 | 108 | 98 | 1.9E-23 | – | |
| SUPERFAMILY | 12 | 97 | 86 | 3.49E-19 | ||
| ProSiteProfiles | 14 | 43 | 30 | 5.001 | ||
| ProSiteProfiles | 15 | 93 | 79 | 13.122 | ||
| SMART | 18 | 46 | 29 | 8.0 | ||
| CDD | 19 | 85 | 67 | 3.45692E-19 | ||
| Pfam | 26 | 80 | 55 | 3.7E-7 | ||
| ProSiteProfiles | 48 | 83 | 36 | 9.994 | ||
| SMART | 52 | 80 | 29 | 1.4 | ||
| PANTHER | 90 | 527 | 438 | 1.1E-268 | – | |
| PANTHER | 90 | 527 | 438 | 1.1E-268 | – | |
| Pfam | 145 | 177 | 33 | 1.5E-15 | ||
| Gene3D | 145 | 511 | 367 | 4.7E-152 | – | |
| SUPERFAMILY | 172 | 446 | 275 | 7.19E-26 | ||
| ProSiteProfiles | 176 | 411 | 236 | 30.395 | ||
| CDD | 181 | 425 | 245 | 7.71597E-140 | – | |
| Gene3D | 182 | 410 | 229 | 4.7E-152 | – | |
| Pfam | 182 | 341 | 160 | 1.8E-9 | ||
| Pfam | 417 | 519 | 103 | 1.6E-36 | ||
| Coils | 532 | 541 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0009500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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