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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0011800 |
| Transcript ID | LotjaGi4g1v0011800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G11950.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7L3Y3|K7L3Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0011800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1480037..1486179) extracted from Lotus japonicus Gifu genome v1.2.
GAAACGAATAATAAAAAAAATCAAAATAAAATAGTCCCTGTCTTTCGAGGTAAGCAAAGCAAAACAAACGCAGCTGAAGA CTCTTTTTCAATTCCCCAACACAACACAACAAAACACACACAGTGAGTGAACCAACGAGAACGAGTTACATGTTCTTTCT CCAGTTTCTGAATTTTGATTCTGATTTCATATTTATTTAATTCACCAATTTCGGATTCATTCAGATATCTTTATTTAATC ACCACCGCATTACATTGAAATTGAAATTGAATGCACGCCGATTCTTGAAACTTGATCACCGCCGCGTGCGTTTTCAATTT CATCATCAGGTTCAGGTTTGTTTCTTCCATTGATTTTTTCTCTTCTTTCGTCAATCAATTCTCGAATTTTCTGCTGTCTG TCTGTGTTTTCTTTTTCACATTTATTTATTGCTTTCATTCAAGACACTCTTTACAACGTTGTTGTTAATGTTGATTTTGC ATGAATGTGATTTCAATTCAATTCCCCAGCTTGATTTATCTTTCTTCTTCGCCGTTGTCGGAAAATTTCTTTCATGTTGT TGGGTTGGGTTGGGTTGGGTTGACTCGAGTCAACTCAGTTCGGCATTGACTTGCAACGATTTGTCTTGCTCAGATTCATG ATCCAAAGGGGGTGGGTTTTATGGTTTCAAATTTACATTTCACTGCTTGCATGCCTGAATTATGATCCTTGGTCTGTGAT TGTTTTGTTTTCTTGATTGGTTATGAGGTTTAGCTTTTCTACAATGGTTACATTAATTCATTCCTTGTGTTGTGTGGTTT TGCATCAAATTGCTTTCTAGAGTTTATGCTATGCTATGCATGTGTCTCTTTAGTTCTTCCTTTGCTGTGCTTGTGTCTGG GTGGTTGTAAGCTTATGCTGCTAGTATATATTGGTTTTGGAATTCACAAATTACAGTGTATTATGTTGCTCACACTCAAC CTGTTGTAAAGGGATTGGGATGCTAGTGCTTCAATGAGTCATAGTCTGTATTGTGGTTTTCTTTTTGTTTGTATATATGT TTGTAATTACTATTTGATTGTGTTTTACTGTTTGTCCTGCAGTGAGAATGGAGGTTGCAGTTTCAAGACAAGAACATTCG AACTCGAATCAACGTGCTGAGGATGATAAGATGCAGTTCTCGAGATGCTCGAAACCTTTTGGAGCTGCATCAAGTAGGAA GGCTAAGGGGATTGGTGAATATGGTAGTAATAAGAGGCTAAAACTAGAAGGGGAAGGAGGAAGTGTGGTGTACTCAAAGA AGGTTACTGCAGTAAGAATGGATGCTACAGTTGCGAAGCGAGAACAGTCAAGTCAGCATATTGGAATTTCAAACAGGAGA AAGGGTCGAGAAATTCAGAAAGGGAAAGAAGGCATTCTGACATGTTCAAAGGTGACCCCCAGACTTCCATCTAAGAAAAG AGATGAGTCCAAGAAGCGTACTACCTCAAGCAAGAAAAGGAAATTTTATGAAGATTATGAAGAAGATGATGAAGAAGGTG AAGTTGAAGATGAAGATGACGATGAAGTAGATGGAGAAGCACTTTTTCTTTCAAGGACAAATGCCAGGAGGAGAGCTAGT ACAACGGATAACATGGTGGTGATTAGCTTTCTTAGTGCATATTTCTTACACTTCAAAATTGAAAAACATTGATTTGATTT GACAGGTTTTAATATGTGGAATATTATGTTATACTTTAATTGTACTTAACTAATTGTTTTAAACAGGGCACTCAACAAAA ACCTCGGATATGTCACCAGTGCATGAAAAAGGAGAGAACAGCTTTTGTGCCTTGTACTAAATGTCCGAAAATGTACTGCA TGCGGTGCCTCCATCAATGGTATGTCACGTTACATATAATCAATCAATTCTGGCAAAGGTGTTTATGTGTTTTTCCCGTG TAGTTTATGAAAGGCCCTTACAAAATATAACTGTTTCTAATTGTTGCACACAGGTATCCTGATATGTCAATAGAAGAAGT TGCTGGAAGTTGCCCATTTTGCCGTAAAAATTGCAATTGCAATGCTTGTTTGCATTCAAAAGGGGTGATTAAGGTTTGAT TTAATCTGATGTCGACCCTTAAGTTAATTTCTGTGATGAAATAAAAATGTCATATAACAATTATATCTATTCCATTAACT CTTTTCAAATTCTTTTTATGTATACTAACAGACATCTGACAATGACATCGCCAACTCCGATAGAGCTCAGTATCTGCACT ATATGATTAACCTACTCCTTCCATATCTGAAACAAATTTGCCATGAACAAACACAAGAGAAAGAGATTGAAGCTAAAATA CAAGGTGTTAATTAATCTTCACGTTTAAGTTTTTTCTTGTTACATTGAAGAAATAGCTAACAATAAACTCTTCTGTCAGG AATATCTTCTTGTGAGATTGACATACAACAAAGTTTGTGTGTTGACGGTGAACGTGTATATTGGTAAGTTTCCTTTTCCC TAAGATACTAGCATGATTCTGTCCATATTCTATAATAACACTATTTTAATTTTTTTGTTCTTGGAGCAGTGACCATTGTG CTACTTCAATTGTTGATCTTCATCGAAGCTGCCCCAAGTGTTCGTTTGAACTATGCCTTAGTTGTTGCCGAGAAATACGT GATGGAAGCATTACACCCCGGGCTGATATGAAGTTCCAATATGTGAATAGGGGTTATGATTATATGCACGGTGGTGACCC TCTACCAGTGTCTTGTCATTTAGAGGCTTCAGATGACCATATTGAGCTATCTTCTCAGTGGAATGCCAAGATTGATGGAA GTGTCAGTTGTGCACCAAAGGAGATGGGGGGTTGTGGTAGCTCTGTGTTGGAGCTTAGGCGCATTCTCCCACAAGGGTGG ATGTCAGACTTGGAGGCCAAAGCTTGCAGTATGCTGCCAATATCAGAAATTGAACAAACAACTCTTCATCAGAAAGAAGC GGTATCGAGCTCCAACTATGTGAGAAAAGCAGCCTTTAGAGATGGCACAAATGGCAATAGCATACACTGTCCAGAGTCAG GAGACATTTCCAAAGAAGGGCTATTGCTTTTCCAAAAACATTGGGCTAGTGGTGAACCCATCATAGTTCGAGATGTTCTT AAACAGGGGACTGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGTATTGTGTGAAAATAAAGTTGCAGAAATCAGTTC AAAAATGTCAGAAGTGAAGGCCATTGATTGCCTGGCTAACTGTGAGGTTTGGCCCTGCTGTTCCCTTTTTTGAACATTTT GGTCAAATTAGAGCATAATGTGTGTACATTTGAAGTGTTTTCTTCTTTCTAATTGTGAGTTGTTTGTGAATTTCCAGTAT TTCAAGTTACCACAAGAATGCTACCTACATTTCCTCTACTAATACCATTAGAAAAAAGAAAACTAAATTTAGTTATGTAA AGGCGTGTCATATTGACCATGATACTCTAACGCAATTCATGTATTGTCATCCATGTCTTTATTCTTAGATTCTACATATT TTAGAGCTCCGATTGCAATCTCAGGTGTTCTATCTCTTATGTGTAACCTTCATAGCTTTATTTCCTACAGCATGCTAGAA TTCTGACCGACAGCCCTGCTAAAATCCTTTGCAGGTAGAAATTAATACTCATAAGTTCTTTAAAGGTTATATAGAGGGAA GAACGTATGAAAACCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCC CGCCACTGCGACGAGTTTATTCGCTCCTTGCCATTTCAAGAATATACTGATCCTCGGGCTGGAATTCTTAATCTTGCTGT GAAGTTGCCAGCAAATGTCCTAAAACCTGACATGGGGCCAAAAACATATATTGCTTATGGGTTTAAAAAAGAACTTGGTA GAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTATGTTTCAAGCTTCAGTTAGCTGTAATTTGGTTG CAGTGCTTGGCCGATCCTCCATTGAATATTTTCTATGTATGAAAGCATATTGACTTTTATTCTTACTTTCTGTTTAATAA TTGTCATAGGTAAATATTTTGACCCATACAGCTGAGGTGATATTAACCGACGAGCAGCTTTCCACTATTTCAAAGTTGAA AGAAGCACACAAGGCACAAGATGATAGAGAACTCCTAAATGGTCAATCTTGCAAGGACAGCAGAGAATATATAGAAAAGA AGGAAGTCTTAGACTCCAAAGGTATGGAGAAGCACCCTATTGAAGTTAATGGAAAGCATGTTTACCAATACCAATAATGT GTCTGAGTGTGTTACTTTTCCTTGTATTCATACAGAAAATGAATCAATAGAAACAGGTTGTGCATTATGGGACATATTTC GGAGAGAGGATACTGAAAAGTTAGAAACGTATCTAAGAAAGCACTCAACTGAATTTAGACATGCTTATTGTTCTCCAGTT GAACAGGTATTGTAATTGCAATGATTCACGTTTCTGAGTATCCTTATTCCATATGCTTGATGCTCAAATCAAAAAATTTG CTGGTTAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTGGGAGCACAAGAAGAAGCTAAAGGAGGAGTTT GGTTAGTGCATAGAATTGCAGATCATTTTATCATTGTTTGCTCAGTTCCTGTGATAGTTATTTATGCGAATCCTTGGCTT TCAGGTGTAGAACCCTGGACTTTCAAACAGAATCTTGGGGAAGCAGTATTTATTCCTGCTGGATGCCCACACCAAGTGAG GAATCTCAAGGTAAAATATCTATTGACATATATTCTATTACCTCACTTTCAACACATTTGCTATTATCTCTAGTTCTAGT CACCTTATGCCAAACCTTGCACAGTCATGCACAAAAGTTGCTGCAGACTTCGTGTCCCCAGAAAATGTCCATGAGTGTCT GCGTTTAACTAATGAGTTCCGTCAGCTTCCCAAGAACCACAAAGCTAGAGAAGATAAACTTGAGGTGATTTGCTTTTAAT TACGGTTCCTTTTGCCTCCTTCTCTATAAATGGTGATAAGGTGATGATGTTTTATTTCTGATTGAACAGATAAAGAAGAT GATAGTTTATGCCGTGGATCAAGCTATCAAGGACTTAACAGATTTATTGAACCTTTCTTGATTGGATGAATGCTGCTTGA AGAAAGCTAATTCATTTTGCCATGATCGGAGATCCTCTACTTTGCTGTGAATGTTAAGAGTGGTCCATATAGAAACATTG TGAAGTCAGAATGTTTTACTAGTTTTTTTCAGTTAATTTAATTGGAGGGTTTTAATGGCTCTCACAGTAGAGTAATTAGT CCCTTGCTTTGATAATGATAGAGTGATTCCTTTTGTTAATGTAACATTTTATATAACAGTTTCAGAGTTTTGTTACCAAA TAAAAGTAATACTAGCCTTAGAACAGTGTTGTCAAATGGCGATCATGGAGGCACCTTGGTGGTATGGTGTGGTGGCCGGT TTCTCATGGGGGCCACCATTTTCATGGTGGATAGCGTTGTCATGACACCGATGGCAGAAGACTCTACCCTTTTTCTTTCA CATTCAAATGTTGCTACTATCCTGCAGTTCCCCCTCCCCCTCCAATGAAATTCCGACAGACTAGTTCAGCGAATTATTGC TATCGACCTCTAGTCAGCCCCCCTCTAGTGAGATCTTTGCTCTTTTGTTTTTGGAACAATTTTTCTGATTTTTCTCCTTG AACCCCTCCACTTCTTTGTTCATGAGTTCGAGCCCTGTTTTTATTGTTCTCCTCAGTTTTTATTCACTTGCCAGCTCTTC TCTCCTCTTCTGATTTACATGGCAAGTGATGAAGCTTCATCACAAGCTTCTTCAAGGAATAAAGAAGAATAATATAGCTG ATATGAGGTGGATGTACAATCATCCTTTGAAAGAAGATGATACTAATAATGATGTCTGCATGTATTGTGGAAAAACTATG AAGGGAGGGATTAATAGAGCTATGCAGCATTTAGTCGGAAAAGCGAGTAATGTTACATGTTGCCTTGCAGAAGACAAAAA GAAGCAAGGCAGTATTGAAATTTCATATGTGAAGGGATGCTTATTATCTTGATTGATACTAAG
CDS sequence (LotjaGi4g1v0011800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTGCAGTTTCAAGACAAGAACATTCGAACTCGAATCAACGTGCTGAGGATGATAAGATGCAGTTCTCGAGATG CTCGAAACCTTTTGGAGCTGCATCAAGTAGGAAGGCTAAGGGGATTGGTGAATATGGTAGTAATAAGAGGCTAAAACTAG AAGGGGAAGGAGGAAGTGTGGTGTACTCAAAGAAGGTTACTGCAGTAAGAATGGATGCTACAGTTGCGAAGCGAGAACAG TCAAGTCAGCATATTGGAATTTCAAACAGGAGAAAGGGTCGAGAAATTCAGAAAGGGAAAGAAGGCATTCTGACATGTTC AAAGGTGACCCCCAGACTTCCATCTAAGAAAAGAGATGAGTCCAAGAAGCGTACTACCTCAAGCAAGAAAAGGAAATTTT ATGAAGATTATGAAGAAGATGATGAAGAAGGTGAAGTTGAAGATGAAGATGACGATGAAGTAGATGGAGAAGCACTTTTT CTTTCAAGGACAAATGCCAGGAGGAGAGCTAGTACAACGGATAACATGGGCACTCAACAAAAACCTCGGATATGTCACCA GTGCATGAAAAAGGAGAGAACAGCTTTTGTGCCTTGTACTAAATGTCCGAAAATGTACTGCATGCGGTGCCTCCATCAAT GGTATCCTGATATGTCAATAGAAGAAGTTGCTGGAAGTTGCCCATTTTGCCGTAAAAATTGCAATTGCAATGCTTGTTTG CATTCAAAAGGGGTGATTAAGACATCTGACAATGACATCGCCAACTCCGATAGAGCTCAGTATCTGCACTATATGATTAA CCTACTCCTTCCATATCTGAAACAAATTTGCCATGAACAAACACAAGAGAAAGAGATTGAAGCTAAAATACAAGGAATAT CTTCTTGTGAGATTGACATACAACAAAGTTTGTGTGTTGACGGTGAACGTGTATATTGTGACCATTGTGCTACTTCAATT GTTGATCTTCATCGAAGCTGCCCCAAGTGTTCGTTTGAACTATGCCTTAGTTGTTGCCGAGAAATACGTGATGGAAGCAT TACACCCCGGGCTGATATGAAGTTCCAATATGTGAATAGGGGTTATGATTATATGCACGGTGGTGACCCTCTACCAGTGT CTTGTCATTTAGAGGCTTCAGATGACCATATTGAGCTATCTTCTCAGTGGAATGCCAAGATTGATGGAAGTGTCAGTTGT GCACCAAAGGAGATGGGGGGTTGTGGTAGCTCTGTGTTGGAGCTTAGGCGCATTCTCCCACAAGGGTGGATGTCAGACTT GGAGGCCAAAGCTTGCAGTATGCTGCCAATATCAGAAATTGAACAAACAACTCTTCATCAGAAAGAAGCGGTATCGAGCT CCAACTATGTGAGAAAAGCAGCCTTTAGAGATGGCACAAATGGCAATAGCATACACTGTCCAGAGTCAGGAGACATTTCC AAAGAAGGGCTATTGCTTTTCCAAAAACATTGGGCTAGTGGTGAACCCATCATAGTTCGAGATGTTCTTAAACAGGGGAC TGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGTATTGTGTGAAAATAAAGTTGCAGAAATCAGTTCAAAAATGTCAG AAGTGAAGGCCATTGATTGCCTGGCTAACTGTGAGGTAGAAATTAATACTCATAAGTTCTTTAAAGGTTATATAGAGGGA AGAACGTATGAAAACCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCC CCGCCACTGCGACGAGTTTATTCGCTCCTTGCCATTTCAAGAATATACTGATCCTCGGGCTGGAATTCTTAATCTTGCTG TGAAGTTGCCAGCAAATGTCCTAAAACCTGACATGGGGCCAAAAACATATATTGCTTATGGGTTTAAAAAAGAACTTGGT AGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTAAATATTTTGACCCATACAGCTGAGGTGATATT AACCGACGAGCAGCTTTCCACTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGATAGAGAACTCCTAAATGGTC AATCTTGCAAGGACAGCAGAGAATATATAGAAAAGAAGGAAGTCTTAGACTCCAAAGAAAATGAATCAATAGAAACAGGT TGTGCATTATGGGACATATTTCGGAGAGAGGATACTGAAAAGTTAGAAACGTATCTAAGAAAGCACTCAACTGAATTTAG ACATGCTTATTGTTCTCCAGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTGGGAGCACAAGA AGAAGCTAAAGGAGGAGTTTGGTGTAGAACCCTGGACTTTCAAACAGAATCTTGGGGAAGCAGTATTTATTCCTGCTGGA TGCCCACACCAAGTGAGGAATCTCAAGTCATGCACAAAAGTTGCTGCAGACTTCGTGTCCCCAGAAAATGTCCATGAGTG TCTGCGTTTAACTAATGAGTTCCGTCAGCTTCCCAAGAACCACAAAGCTAGAGAAGATAAACTTGAGATAAAGAAGATGA TAGTTTATGCCGTGGATCAAGCTATCAAGGACTTAACAGATTTATTGAACCTTTCTTGA
Protein sequence (LotjaGi4g1v0011800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVAVSRQEHSNSNQRAEDDKMQFSRCSKPFGAASSRKAKGIGEYGSNKRLKLEGEGGSVVYSKKVTAVRMDATVAKREQ SSQHIGISNRRKGREIQKGKEGILTCSKVTPRLPSKKRDESKKRTTSSKKRKFYEDYEEDDEEGEVEDEDDDEVDGEALF LSRTNARRRASTTDNMGTQQKPRICHQCMKKERTAFVPCTKCPKMYCMRCLHQWYPDMSIEEVAGSCPFCRKNCNCNACL HSKGVIKTSDNDIANSDRAQYLHYMINLLLPYLKQICHEQTQEKEIEAKIQGISSCEIDIQQSLCVDGERVYCDHCATSI VDLHRSCPKCSFELCLSCCREIRDGSITPRADMKFQYVNRGYDYMHGGDPLPVSCHLEASDDHIELSSQWNAKIDGSVSC APKEMGGCGSSVLELRRILPQGWMSDLEAKACSMLPISEIEQTTLHQKEAVSSSNYVRKAAFRDGTNGNSIHCPESGDIS KEGLLLFQKHWASGEPIIVRDVLKQGTGLSWEPMVMWRVLCENKVAEISSKMSEVKAIDCLANCEVEINTHKFFKGYIEG RTYENLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRAGILNLAVKLPANVLKPDMGPKTYIAYGFKKELG RGDSVTKLHCDMSDAVNILTHTAEVILTDEQLSTISKLKEAHKAQDDRELLNGQSCKDSREYIEKKEVLDSKENESIETG CALWDIFRREDTEKLETYLRKHSTEFRHAYCSPVEQVVHPIHDQCFYLTWEHKKKLKEEFGVEPWTFKQNLGEAVFIPAG CPHQVRNLKSCTKVAADFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAIKDLTDLLNLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 10 | 870 | 861 | 0.0 | – | |
| PANTHER | 10 | 870 | 861 | 0.0 | – | |
| MobiDBLite | 75 | 154 | 80 | - | – | |
| MobiDBLite | 84 | 101 | 18 | - | – | |
| MobiDBLite | 138 | 154 | 17 | - | – | |
| Pfam | 181 | 249 | 69 | 1.8E-6 | ||
| ProSiteProfiles | 185 | 231 | 47 | 9.996 | ||
| Gene3D | 472 | 844 | 373 | 1.8E-159 | – | |
| SUPERFAMILY | 486 | 859 | 374 | 8.1E-38 | – | |
| SMART | 586 | 835 | 250 | 3.4E-71 | ||
| ProSiteProfiles | 605 | 835 | 231 | 26.434 | ||
| Pfam | 719 | 818 | 100 | 1.7E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0011800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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