Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0011800 |
| Transcript ID | LotjaGi4g1v0011800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor jumonji (JmjC) domain protein; TAIR: AT1G11950.1 Transcription factor jumonji (jmjC) domain-containing protein; Swiss-Prot: sp|Q9SSE9|JMJ25_ARATH Lysine-specific demethylase JMJ25; TrEMBL-Plants: tr|K7L3Y3|K7L3Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0011800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1480094..1486043) extracted from Lotus japonicus Gifu genome v1.2.
AGCAAAACAAACGCAGCTGAAGACTCTTTTTCAATTCCCCAACACAACACAACAAAACACACACAGTGAGTGAACCAACG AGAACGAGTTACATGTTCTTTCTCCAGTTTCTGAATTTTGATTCTGATTTCATATTTATTTAATTCACCAATTTCGGATT CATTCAGATATCTTTATTTAATCACCACCGCATTACATTGAAATTGAAATTGAATGCACGCCGATTCTTGAAACTTGATC ACCGCCGCGTGCGTTTTCAATTTCATCATCAGGTTCAGGTTTGTTTCTTCCATTGATTTTTTCTCTTCTTTCGTCAATCA ATTCTCGAATTTTCTGCTGTCTGTCTGTGTTTTCTTTTTCACATTTATTTATTGCTTTCATTCAAGACACTCTTTACAAC GTTGTTGTTAATGTTGATTTTGCATGAATGTGATTTCAATTCAATTCCCCAGCTTGATTTATCTTTCTTCTTCGCCGTTG TCGGAAAATTTCTTTCATGTTGTTGGGTTGGGTTGGGTTGGGTTGACTCGAGTCAACTCAGTTCGGCATTGACTTGCAAC GATTTGTCTTGCTCAGATTCATGATCCAAAGGGGGTGGGTTTTATGGTTTCAAATTTACATTTCACTGCTTGCATGCCTG AATTATGATCCTTGGTCTGTGATTGTTTTGTTTTCTTGATTGGTTATGAGGTTTAGCTTTTCTACAATGGTTACATTAAT TCATTCCTTGTGTTGTGTGGTTTTGCATCAAATTGCTTTCTAGAGTTTATGCTATGCTATGCATGTGTCTCTTTAGTTCT TCCTTTGCTGTGCTTGTGTCTGGGTGGTTGTAAGCTTATGCTGCTAGTATATATTGGTTTTGGAATTCACAAATTACAGT GTATTATGTTGCTCACACTCAACCTGTTGTAAAGGGATTGGGATGCTAGTGCTTCAATGAGTCATAGTCTGTATTGTGGT TTTCTTTTTGTTTGTATATATGTTTGTAATTACTATTTGATTGTGTTTTACTGTTTGTCCTGCAGTGAGAATGGAGGTTG CAGTTTCAAGACAAGAACATTCGAACTCGAATCAACGTGCTGAGGATGATAAGATGCAGTTCTCGAGATGCTCGAAACCT TTTGGAGCTGCATCAAGTAGGAAGGCTAAGGGGATTGGTGAATATGGTAGTAATAAGAGGCTAAAACTAGAAGGGGAAGG AGGAAGTGTGGTGTACTCAAAGAAGGTTACTGCAGTAAGAATGGATGCTACAGTTGCGAAGCGAGAACAGTCAAGTCAGC ATATTGGAATTTCAAACAGGAGAAAGGGTCGAGAAATTCAGAAAGGGAAAGAAGGCATTCTGACATGTTCAAAGGTGACC CCCAGACTTCCATCTAAGAAAAGAGATGAGTCCAAGAAGCGTACTACCTCAAGCAAGAAAAGGAAATTTTATGAAGATTA TGAAGAAGATGATGAAGAAGGTGAAGTTGAAGATGAAGATGACGATGAAGTAGATGGAGAAGCACTTTTTCTTTCAAGGA CAAATGCCAGGAGGAGAGCTAGTACAACGGATAACATGGTGGTGATTAGCTTTCTTAGTGCATATTTCTTACACTTCAAA ATTGAAAAACATTGATTTGATTTGACAGGTTTTAATATGTGGAATATTATGTTATACTTTAATTGTACTTAACTAATTGT TTTAAACAGGGCACTCAACAAAAACCTCGGATATGTCACCAGTGCATGAAAAAGGAGAGAACAGCTTTTGTGCCTTGTAC TAAATGTCCGAAAATGTACTGCATGCGGTGCCTCCATCAATGGTATGTCACGTTACATATAATCAATCAATTCTGGCAAA GGTGTTTATGTGTTTTTCCCGTGTAGTTTATGAAAGGCCCTTACAAAATATAACTGTTTCTAATTGTTGCACACAGGTAT CCTGATATGTCAATAGAAGAAGTTGCTGGAAGTTGCCCATTTTGCCGTAAAAATTGCAATTGCAATGCTTGTTTGCATTC AAAAGGGGTGATTAAGGTTTGATTTAATCTGATGTCGACCCTTAAGTTAATTTCTGTGATGAAATAAAAATGTCATATAA CAATTATATCTATTCCATTAACTCTTTTCAAATTCTTTTTATGTATACTAACAGACATCTGACAATGACATCGCCAACTC CGATAGAGCTCAGTATCTGCACTATATGATTAACCTACTCCTTCCATATCTGAAACAAATTTGCCATGAACAAACACAAG AGAAAGAGATTGAAGCTAAAATACAAGGTGTTAATTAATCTTCACGTTTAAGTTTTTTCTTGTTACATTGAAGAAATAGC TAACAATAAACTCTTCTGTCAGGAATATCTTCTTGTGAGATTGACATACAACAAAGTTTGTGTGTTGACGGTGAACGTGT ATATTGGTAAGTTTCCTTTTCCCTAAGATACTAGCATGATTCTGTCCATATTCTATAATAACACTATTTTAATTTTTTTG TTCTTGGAGCAGTGACCATTGTGCTACTTCAATTGTTGATCTTCATCGAAGCTGCCCCAAGTGTTCGTTTGAACTATGCC TTAGTTGTTGCCGAGAAATACGTGATGGAAGCATTACACCCCGGGCTGATATGAAGTTCCAATATGTGAATAGGGGTTAT GATTATATGCACGGTGGTGACCCTCTACCAGTGTCTTGTCATTTAGAGGCTTCAGATGACCATATTGAGCTATCTTCTCA GTGGAATGCCAAGATTGATGGAAGTGTCAGTTGTGCACCAAAGGAGATGGGGGGTTGTGGTAGCTCTGTGTTGGAGCTTA GGCGCATTCTCCCACAAGGGTGGATGTCAGACTTGGAGGCCAAAGCTTGCAGTATGCTGCCAATATCAGAAATTGAACAA ACAACTCTTCATCAGAAAGAAGCGGTATCGAGCTCCAACTATGTGAGAAAAGCAGCCTTTAGAGATGGCACAAATGGCAA TAGCATACACTGTCCAGAGTCAGGAGACATTTCCAAAGAAGGGCTATTGCTTTTCCAAAAACATTGGGCTAGTGGTGAAC CCATCATAGTTCGAGATGTTCTTAAACAGGGGACTGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGTATTGTGTGAA AATAAAGTTGCAGAAATCAGTTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCCTGGCTAACTGTGAGGTTTGGCCCTG CTGTTCCCTTTTTTGAACATTTTGGTCAAATTAGAGCATAATGTGTGTACATTTGAAGTGTTTTCTTCTTTCTAATTGTG AGTTGTTTGTGAATTTCCAGTATTTCAAGTTACCACAAGAATGCTACCTACATTTCCTCTACTAATACCATTAGAAAAAA GAAAACTAAATTTAGTTATGTAAAGGCGTGTCATATTGACCATGATACTCTAACGCAATTCATGTATTGTCATCCATGTC TTTATTCTTAGATTCTACATATTTTAGAGCTCCGATTGCAATCTCAGGTGTTCTATCTCTTATGTGTAACCTTCATAGCT TTATTTCCTACAGCATGCTAGAATTCTGACCGACAGCCCTGCTAAAATCCTTTGCAGGTAGAAATTAATACTCATAAGTT CTTTAAAGGTTATATAGAGGGAAGAACGTATGAAAACCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTG ATAAATTTGAAGATCTTTTGCCCCGCCACTGCGACGAGTTTATTCGCTCCTTGCCATTTCAAGAATATACTGATCCTCGG GCTGGAATTCTTAATCTTGCTGTGAAGTTGCCAGCAAATGTCCTAAAACCTGACATGGGGCCAAAAACATATATTGCTTA TGGGTTTAAAAAAGAACTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTATGTTTCAAGC TTCAGTTAGCTGTAATTTGGTTGCAGTGCTTGGCCGATCCTCCATTGAATATTTTCTATGTATGAAAGCATATTGACTTT TATTCTTACTTTCTGTTTAATAATTGTCATAGGTAAATATTTTGACCCATACAGCTGAGGTGATATTAACCGACGAGCAG CTTTCCACTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGATAGAGAACTCCTAAATGGTCAATCTTGCAAGGA CAGCAGAGAATATATAGAAAAGAAGGAAGTCTTAGACTCCAAAGGTATGGAGAAGCACCCTATTGAAGTTAATGGAAAGC ATGTTTACCAATACCAATAATGTGTCTGAGTGTGTTACTTTTCCTTGTATTCATACAGAAAATGAATCAATAGAAACAGG TTGTGCATTATGGGACATATTTCGGAGAGAGGATACTGAAAAGTTAGAAACGTATCTAAGAAAGCACTCAACTGAATTTA GACATGCTTATTGTTCTCCAGTTGAACAGGTATTGTAATTGCAATGATTCACGTTTCTGAGTATCCTTATTCCATATGCT TGATGCTCAAATCAAAAAATTTGCTGGTTAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTGGGAGCACA AGAAGAAGCTAAAGGAGGAGTTTGGTTAGTGCATAGAATTGCAGATCATTTTATCATTGTTTGCTCAGTTCCTGTGATAG TTATTTATGCGAATCCTTGGCTTTCAGGTGTAGAACCCTGGACTTTCAAACAGAATCTTGGGGAAGCAGTATTTATTCCT GCTGGATGCCCACACCAAGTGAGGAATCTCAAGGTAAAATATCTATTGACATATATTCTATTACCTCACTTTCAACACAT TTGCTATTATCTCTAGTTCTAGTCACCTTATGCCAAACCTTGCACAGTCATGCACAAAAGTTGCTGCAGACTTCGTGTCC CCAGAAAATGTCCATGAGTGTCTGCGTTTAACTAATGAGTTCCGTCAGCTTCCCAAGAACCACAAAGCTAGAGAAGATAA ACTTGAGGTGATTTGCTTTTAATTACGGTTCCTTTTGCCTCCTTCTCTATAAATGGTGATAAGGTGATGATGTTTTATTT CTGATTGAACAGATAAAGAAGATGATAGTTTATGCCGTGGATCAAGCTATCAAGGACTTAACAGATTTATTGAACCTTTC TTGATTGGATGAATGCTGCTTGAAGAAAGCTAATTCATTTTGCCATGATCGGAGATCCTCTACTTTGCTGTGAATGTTAA GAGTGGTCCATATAGAAACATTGTGAAGTCAGAATGTTTTACTAGTTTTTTTCAGTTAATTTAATTGGAGGGTTTTAATG GCTCTCACAGTAGAGTAATTAGTCCCTTGCTTTGATAATGATAGAGTGATTCCTTTTGTTAATGTAACATTTTATATAAC AGTTTCAGAGTTTTGTTACCAAATAAAAGTAATACTAGCCTTAGAACAGTGTTGTCAAATGGCGATCATGGAGGCACCTT GGTGGTATGGTGTGGTGGCCGGTTTCTCATGGGGGCCACCATTTTCATGGTGGATAGCGTTGTCATGACACCGATGGCAG AAGACTCTACCCTTTTTCTTTCACATTCAAATGTTGCTACTATCCTGCAGTTCCCCCTCCCCCTCCAATGAAATTCCGAC AGACTAGTTCAGCGAATTATTGCTATCGACCTCTAGTCAGCCCCCCTCTAGTGAGATCTTTGCTCTTTTGTTTTTGGAAC AATTTTTCTGATTTTTCTCCTTGAACCCCTCCACTTCTTTGTTCATGAGTTCGAGCCCTGTTTTTATTGTTCTCCTCAGT TTTTATTCACTTGCCAGCTCTTCTCTCCTCTTCTGATTTACATGGCAAGTGATGAAGCTTCATCACAAGCTTCTTCAAGG AATAAAGAAGAATAATATAGCTGATATGAGGTGGATGTACAATCATCCTTTGAAAGAAGATGATACTAATAATGATGTCT GCATGTATTGTGGAAAAACTATGAAGGGAG
CDS sequence (LotjaGi4g1v0011800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTGCAGTTTCAAGACAAGAACATTCGAACTCGAATCAACGTGCTGAGGATGATAAGATGCAGTTCTCGAGATG CTCGAAACCTTTTGGAGCTGCATCAAGTAGGAAGGCTAAGGGGATTGGTGAATATGGTAGTAATAAGAGGCTAAAACTAG AAGGGGAAGGAGGAAGTGTGGTGTACTCAAAGAAGGTTACTGCAGTAAGAATGGATGCTACAGTTGCGAAGCGAGAACAG TCAAGTCAGCATATTGGAATTTCAAACAGGAGAAAGGGTCGAGAAATTCAGAAAGGGAAAGAAGGCATTCTGACATGTTC AAAGGTGACCCCCAGACTTCCATCTAAGAAAAGAGATGAGTCCAAGAAGCGTACTACCTCAAGCAAGAAAAGGAAATTTT ATGAAGATTATGAAGAAGATGATGAAGAAGGTGAAGTTGAAGATGAAGATGACGATGAAGTAGATGGAGAAGCACTTTTT CTTTCAAGGACAAATGCCAGGAGGAGAGCTAGTACAACGGATAACATGGGCACTCAACAAAAACCTCGGATATGTCACCA GTGCATGAAAAAGGAGAGAACAGCTTTTGTGCCTTGTACTAAATGTCCGAAAATGTACTGCATGCGGTGCCTCCATCAAT GGTATCCTGATATGTCAATAGAAGAAGTTGCTGGAAGTTGCCCATTTTGCCGTAAAAATTGCAATTGCAATGCTTGTTTG CATTCAAAAGGGGTGATTAAGACATCTGACAATGACATCGCCAACTCCGATAGAGCTCAGTATCTGCACTATATGATTAA CCTACTCCTTCCATATCTGAAACAAATTTGCCATGAACAAACACAAGAGAAAGAGATTGAAGCTAAAATACAAGGAATAT CTTCTTGTGAGATTGACATACAACAAAGTTTGTGTGTTGACGGTGAACGTGTATATTGTGACCATTGTGCTACTTCAATT GTTGATCTTCATCGAAGCTGCCCCAAGTGTTCGTTTGAACTATGCCTTAGTTGTTGCCGAGAAATACGTGATGGAAGCAT TACACCCCGGGCTGATATGAAGTTCCAATATGTGAATAGGGGTTATGATTATATGCACGGTGGTGACCCTCTACCAGTGT CTTGTCATTTAGAGGCTTCAGATGACCATATTGAGCTATCTTCTCAGTGGAATGCCAAGATTGATGGAAGTGTCAGTTGT GCACCAAAGGAGATGGGGGGTTGTGGTAGCTCTGTGTTGGAGCTTAGGCGCATTCTCCCACAAGGGTGGATGTCAGACTT GGAGGCCAAAGCTTGCAGTATGCTGCCAATATCAGAAATTGAACAAACAACTCTTCATCAGAAAGAAGCGGTATCGAGCT CCAACTATGTGAGAAAAGCAGCCTTTAGAGATGGCACAAATGGCAATAGCATACACTGTCCAGAGTCAGGAGACATTTCC AAAGAAGGGCTATTGCTTTTCCAAAAACATTGGGCTAGTGGTGAACCCATCATAGTTCGAGATGTTCTTAAACAGGGGAC TGGTCTGAGCTGGGAGCCAATGGTCATGTGGCGAGTATTGTGTGAAAATAAAGTTGCAGAAATCAGTTCAAAAATGTCAG AAGTGAAGGCCATTGATTGCCTGGCTAACTGTGAGGTAGAAATTAATACTCATAAGTTCTTTAAAGGTTATATAGAGGGA AGAACGTATGAAAACCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCC CCGCCACTGCGACGAGTTTATTCGCTCCTTGCCATTTCAAGAATATACTGATCCTCGGGCTGGAATTCTTAATCTTGCTG TGAAGTTGCCAGCAAATGTCCTAAAACCTGACATGGGGCCAAAAACATATATTGCTTATGGGTTTAAAAAAGAACTTGGT AGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTAAATATTTTGACCCATACAGCTGAGGTGATATT AACCGACGAGCAGCTTTCCACTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGATAGAGAACTCCTAAATGGTC AATCTTGCAAGGACAGCAGAGAATATATAGAAAAGAAGGAAGTCTTAGACTCCAAAGAAAATGAATCAATAGAAACAGGT TGTGCATTATGGGACATATTTCGGAGAGAGGATACTGAAAAGTTAGAAACGTATCTAAGAAAGCACTCAACTGAATTTAG ACATGCTTATTGTTCTCCAGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTGGGAGCACAAGA AGAAGCTAAAGGAGGAGTTTGGTGTAGAACCCTGGACTTTCAAACAGAATCTTGGGGAAGCAGTATTTATTCCTGCTGGA TGCCCACACCAAGTGAGGAATCTCAAGTCATGCACAAAAGTTGCTGCAGACTTCGTGTCCCCAGAAAATGTCCATGAGTG TCTGCGTTTAACTAATGAGTTCCGTCAGCTTCCCAAGAACCACAAAGCTAGAGAAGATAAACTTGAGATAAAGAAGATGA TAGTTTATGCCGTGGATCAAGCTATCAAGGACTTAACAGATTTATTGAACCTTTCTTGA
Protein sequence (LotjaGi4g1v0011800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVAVSRQEHSNSNQRAEDDKMQFSRCSKPFGAASSRKAKGIGEYGSNKRLKLEGEGGSVVYSKKVTAVRMDATVAKREQ SSQHIGISNRRKGREIQKGKEGILTCSKVTPRLPSKKRDESKKRTTSSKKRKFYEDYEEDDEEGEVEDEDDDEVDGEALF LSRTNARRRASTTDNMGTQQKPRICHQCMKKERTAFVPCTKCPKMYCMRCLHQWYPDMSIEEVAGSCPFCRKNCNCNACL HSKGVIKTSDNDIANSDRAQYLHYMINLLLPYLKQICHEQTQEKEIEAKIQGISSCEIDIQQSLCVDGERVYCDHCATSI VDLHRSCPKCSFELCLSCCREIRDGSITPRADMKFQYVNRGYDYMHGGDPLPVSCHLEASDDHIELSSQWNAKIDGSVSC APKEMGGCGSSVLELRRILPQGWMSDLEAKACSMLPISEIEQTTLHQKEAVSSSNYVRKAAFRDGTNGNSIHCPESGDIS KEGLLLFQKHWASGEPIIVRDVLKQGTGLSWEPMVMWRVLCENKVAEISSKMSEVKAIDCLANCEVEINTHKFFKGYIEG RTYENLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRAGILNLAVKLPANVLKPDMGPKTYIAYGFKKELG RGDSVTKLHCDMSDAVNILTHTAEVILTDEQLSTISKLKEAHKAQDDRELLNGQSCKDSREYIEKKEVLDSKENESIETG CALWDIFRREDTEKLETYLRKHSTEFRHAYCSPVEQVVHPIHDQCFYLTWEHKKKLKEEFGVEPWTFKQNLGEAVFIPAG CPHQVRNLKSCTKVAADFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAIKDLTDLLNLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| PANTHER | 10 | 870 | 861 | 0.0 | – | |
| PANTHER | 10 | 870 | 861 | 0.0 | – | |
| MobiDBLite | 75 | 154 | 80 | - | – | |
| MobiDBLite | 84 | 101 | 18 | - | – | |
| MobiDBLite | 138 | 154 | 17 | - | – | |
| Pfam | 181 | 249 | 69 | 1.8E-6 | ||
| ProSiteProfiles | 185 | 231 | 47 | 9.996 | ||
| Gene3D | 472 | 844 | 373 | 1.8E-159 | – | |
| SUPERFAMILY | 486 | 859 | 374 | 8.1E-38 | – | |
| SMART | 586 | 835 | 250 | 3.4E-71 | ||
| ProSiteProfiles | 605 | 835 | 231 | 26.434 | ||
| Pfam | 719 | 818 | 100 | 1.7E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0011800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…