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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0012100 |
| Transcript ID | LotjaGi4g1v0012100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G11920.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O65388|PLY2_ARATH Putative pectate lyase 2; TrEMBL-Plants: tr|I3T5F9|I3T5F9_LOTJA Pectate lyase; Found in the gene: LotjaGi4g1v0012100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1503924..1506587) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTGTGTGCACCACCCTCTCCTCACCTATTTAATCACCTCATTCCCTTTGTTACTTCAACTTCAAGTTCAACATAAT AAGCATGGCTACCTCAACCACACTCCTCTTACTTTCATTCTTTGTTCTCCACCTTGCATTATTGGTTAATGCATATGAAT ATTCCACAGAGAAGTACTACTACAACAATCCTGAACCTGTTTCTAAAAAACCATTCCTTAATGTGATAGATTCTTGTTGG CGTGCCAAATCAAATTGGGCCTCAAATCGCAAAGCTTTAGCTGATTGTGCAATTGGATTTGGTAAAAGTGCAATTGGAGG CAAGTATGGTGCAATATATGTAGTCATAGATTCCTCTGATAACCCTGCAAACCCAAAACCAGGAACACTTCGTTATGGTG CAATCCAAACACAGCCTCTCTGGATCATTTTTGCCAGAGACATGGTTATCACACTTGGGAATGAGCTTATCATGAACAGT TACAAGACAATTGATGGTAGAGGAGCTAAAGTGGTGATTGGAAATGGGCCTTGTATTACAATTCAAGGTGTTAGCCATGT TATTGTGCATGGCATTAGCATCCATGATTGTAAACCAGGAAAAAGTGGCCTTGTGAGGAGTAGTGTTGATCATGTTGGTC ATAGACGAGGCTCTGATGGAGATGGCATTAGCATATTTGCTTCCTCAAATGTTTGGATCGATCATTGCTTTTTGGCTCGT TGCACTGATGGACTAATTGATATCGTTCATGCCTCAACAGCCATTACCATTTCTAACAATTACTTCACCCAGCATGACAA AGTAAGCACAACTTCCAACTCTTCTGTTTGATGCTTAATTTCTACCATAATGACATACTATAGGAGAATCAAGGAAATGA GCACATATTCCTAATTTGAAAATATAATTCTAATTTAAAGATATATAGTATCATATATAATAATCTGATCAGTAGAGATA TAGTTTTTCTTATACTCAGATTTTCGTAGACATGATTCTTGTTCATATGAGATGCATGCATAAACACCATAATGCACTAT ACTCCCCTAGCACATATTCTAAGTCCTTCATTTTGAGACTAGGATGGGCATCTGATAGCATGTTTTGTGTTTGGTTCCAC GGTAAAATGCTCTATAGAATCACTTTTGAATAAAAGCTGCAAGTTTTAGATTCTGAATAAATGTGTAGAGGGAAAGAGCC ATGTTTCATGAGAACCAAGTAATGGCCCATTTTGATGAAGGATTACATTTAGCTGATTTCTAGTTTGTTATTCAGCATCA ATATCTAGAACCCTACCAGAGCTAAGATGTTGGCACTTGTCAATCATCCTCTAATTCTAGGATATGAAAATAACCCTAAC ATGTAGAATCACTAATGAATGAAAATCACCCGGAGAATAGAGCTATTTGCTCAACATTTACTTTTGATCTTAGTTTTTAT TAGATCTAGCATGATAGGATAATAGGAAATTGCTTCCGATCAGAATTATGTGCAAATTGTGTAACCAGACATGCATTAAA TCTGATGGAGCTCATGTGCTTGCAGGTTATGTTGCTAGGACACAATGACAAATACACAGCTGATAAAATCATGAGAGTAA CAATTGCCTTCAACCGGTTTGCTAGTGGCCTAATTGAAAGGATGCCAAGGTAGTAATAGTAAGAGTATGGACTGATGAAT TAATTTGCATATAGTCAATCAAAATTTGATAATTGACTTGTTGATGAACATGTATATATTTGCAGGGTGAGATTTGGTTA TGCCCATGTGGTCAACAACAAATATGAGGAGTGGAAAATGTATGCTATAGGCGGCAGTGCCAACCCTACCATTTTAAGTG AAGGGAACTATTTTATAGCACCAAATAACCCAAATGCAAAACAGGTAGCAACACAGTAGTAAGAAATTTATATAGTACAT ATTGAGATACAGGATGAAAAAATACAGTTAAACCAAAATCATGTTGGACAAGTGCAAAAGTTAAGAGAAGTTACTTTTGT CCACCATGATTTTGATGCACTATGATTTTCAATCGTGTATCAAATTAAACAATTTCAGATACTGAGTATGGTTCTTGTAT GATAGGTTACCAAGAGGGAGTTGAATGAAAACGGGAAGAACTGGAAATGGAGGTCTTCTAAGGATGTGTTTGTAAATGGT GCTTACTTTGTACCATCTGGGTATGGAAGTTGTGCCCCAAATTATACACCTGCTCAGTCTTTTGCTGTTGCTCCAGCGTC CACTGTGCCTGCAATAACACTCAATGCAGGTCCCACAACTTGTGTTGTTGGGAAAGCATGTTAACATGTCTTATATGCAT TGCAATTTCTTTCAATTTTGCTTTTTGTATTTTTCTTGTTGATTCCTGAAAGAGCTGTTTTGGAGGCTCATTCACAGGGT AGGAGTGACTAATAACTCATAAGTGTATCATATGTTACCAATCAACTGGTTTCAAGAAAATTGCTTTGTAATACTTAGCA GATTCAATATTACTCAAGAAAATGCTATGTAAATTGTGATGCAACTCTATCAGCATCATATACTCTGCCAAAGAAACAAT ATCCAAATAAGTTTTAAAATTTATTTCTAAAAATAGTTTTTTAATTCAGAAAAATGAGAAGAGAATCAACAATTGGGGTC TTAATTTCTTGCTTTGGAATTCAG
CDS sequence (LotjaGi4g1v0012100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCTCAACCACACTCCTCTTACTTTCATTCTTTGTTCTCCACCTTGCATTATTGGTTAATGCATATGAATATTC CACAGAGAAGTACTACTACAACAATCCTGAACCTGTTTCTAAAAAACCATTCCTTAATGTGATAGATTCTTGTTGGCGTG CCAAATCAAATTGGGCCTCAAATCGCAAAGCTTTAGCTGATTGTGCAATTGGATTTGGTAAAAGTGCAATTGGAGGCAAG TATGGTGCAATATATGTAGTCATAGATTCCTCTGATAACCCTGCAAACCCAAAACCAGGAACACTTCGTTATGGTGCAAT CCAAACACAGCCTCTCTGGATCATTTTTGCCAGAGACATGGTTATCACACTTGGGAATGAGCTTATCATGAACAGTTACA AGACAATTGATGGTAGAGGAGCTAAAGTGGTGATTGGAAATGGGCCTTGTATTACAATTCAAGGTGTTAGCCATGTTATT GTGCATGGCATTAGCATCCATGATTGTAAACCAGGAAAAAGTGGCCTTGTGAGGAGTAGTGTTGATCATGTTGGTCATAG ACGAGGCTCTGATGGAGATGGCATTAGCATATTTGCTTCCTCAAATGTTTGGATCGATCATTGCTTTTTGGCTCGTTGCA CTGATGGACTAATTGATATCGTTCATGCCTCAACAGCCATTACCATTTCTAACAATTACTTCACCCAGCATGACAAAGTT ATGTTGCTAGGACACAATGACAAATACACAGCTGATAAAATCATGAGAGTAACAATTGCCTTCAACCGGTTTGCTAGTGG CCTAATTGAAAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTCAACAACAAATATGAGGAGTGGAAAATGTATG CTATAGGCGGCAGTGCCAACCCTACCATTTTAAGTGAAGGGAACTATTTTATAGCACCAAATAACCCAAATGCAAAACAG GTTACCAAGAGGGAGTTGAATGAAAACGGGAAGAACTGGAAATGGAGGTCTTCTAAGGATGTGTTTGTAAATGGTGCTTA CTTTGTACCATCTGGGTATGGAAGTTGTGCCCCAAATTATACACCTGCTCAGTCTTTTGCTGTTGCTCCAGCGTCCACTG TGCCTGCAATAACACTCAATGCAGGTCCCACAACTTGTGTTGTTGGGAAAGCATGTTAA
Protein sequence (LotjaGi4g1v0012100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSTTLLLLSFFVLHLALLVNAYEYSTEKYYYNNPEPVSKKPFLNVIDSCWRAKSNWASNRKALADCAIGFGKSAIGGK YGAIYVVIDSSDNPANPKPGTLRYGAIQTQPLWIIFARDMVITLGNELIMNSYKTIDGRGAKVVIGNGPCITIQGVSHVI VHGISIHDCKPGKSGLVRSSVDHVGHRRGSDGDGISIFASSNVWIDHCFLARCTDGLIDIVHASTAITISNNYFTQHDKV MLLGHNDKYTADKIMRVTIAFNRFASGLIERMPRVRFGYAHVVNNKYEEWKMYAIGGSANPTILSEGNYFIAPNNPNAKQ VTKRELNENGKNWKWRSSKDVFVNGAYFVPSGYGSCAPNYTPAQSFAVAPASTVPAITLNAGPTTCVVGKAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 5 | 392 | 388 | 3.1E-209 | – | |
| PANTHER | 5 | 392 | 388 | 3.1E-209 | – | |
| Phobius | 7 | 19 | 13 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 20 | 23 | 4 | - | – | |
| Phobius | 24 | 392 | 369 | - | – | |
| Gene3D | 45 | 385 | 341 | 4.2E-120 | ||
| SUPERFAMILY | 46 | 383 | 338 | 5.97E-98 | ||
| PRINTS | 68 | 85 | 18 | 1.4E-79 | ||
| PRINTS | 91 | 116 | 26 | 1.4E-79 | ||
| SMART | 119 | 316 | 198 | 1.3E-97 | ||
| PRINTS | 127 | 143 | 17 | 1.4E-79 | ||
| Pfam | 130 | 310 | 181 | 6.2E-27 | ||
| PRINTS | 191 | 212 | 22 | 1.4E-79 | ||
| PRINTS | 271 | 290 | 20 | 1.4E-79 | ||
| PRINTS | 293 | 312 | 20 | 1.4E-79 | ||
| PRINTS | 333 | 357 | 25 | 1.4E-79 | ||
| PRINTS | 363 | 386 | 24 | 1.4E-79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0012100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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