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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0012100 |
| Transcript ID | LotjaGi4g1v0012100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectate lyase; TAIR: AT1G11920.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|O65388|PLY2_ARATH Putative pectate lyase 2; TrEMBL-Plants: tr|I3T5F9|I3T5F9_LOTJA Pectate lyase; Found in the gene: LotjaGi4g1v0012100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1504008..1506227) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTACCTCAACCACACTCCTCTTACTTTCATTCTTTGTTCTCCACCTTGCATTATTGGTTAATGCATATGAATATTC CACAGAGAAGTACTACTACAACAATCCTGAACCTGTTTCTAAAAAACCATTCCTTAATGTGATAGATTCTTGTTGGCGTG CCAAATCAAATTGGGCCTCAAATCGCAAAGCTTTAGCTGATTGTGCAATTGGATTTGGTAAAAGTGCAATTGGAGGCAAG TATGGTGCAATATATGTAGTCATAGATTCCTCTGATAACCCTGCAAACCCAAAACCAGGAACACTTCGTTATGGTGCAAT CCAAACACAGCCTCTCTGGATCATTTTTGCCAGAGACATGGTTATCACACTTGGGAATGAGCTTATCATGAACAGTTACA AGACAATTGATGGTAGAGGAGCTAAAGTGGTGATTGGAAATGGGCCTTGTATTACAATTCAAGGTGTTAGCCATGTTATT GTGCATGGCATTAGCATCCATGATTGTAAACCAGGAAAAAGTGGCCTTGTGAGGAGTAGTGTTGATCATGTTGGTCATAG ACGAGGCTCTGATGGAGATGGCATTAGCATATTTGCTTCCTCAAATGTTTGGATCGATCATTGCTTTTTGGCTCGTTGCA CTGATGGACTAATTGATATCGTTCATGCCTCAACAGCCATTACCATTTCTAACAATTACTTCACCCAGCATGACAAAGTA AGCACAACTTCCAACTCTTCTGTTTGATGCTTAATTTCTACCATAATGACATACTATAGGAGAATCAAGGAAATGAGCAC ATATTCCTAATTTGAAAATATAATTCTAATTTAAAGATATATAGTATCATATATAATAATCTGATCAGTAGAGATATAGT TTTTCTTATACTCAGATTTTCGTAGACATGATTCTTGTTCATATGAGATGCATGCATAAACACCATAATGCACTATACTC CCCTAGCACATATTCTAAGTCCTTCATTTTGAGACTAGGATGGGCATCTGATAGCATGTTTTGTGTTTGGTTCCACGGTA AAATGCTCTATAGAATCACTTTTGAATAAAAGCTGCAAGTTTTAGATTCTGAATAAATGTGTAGAGGGAAAGAGCCATGT TTCATGAGAACCAAGTAATGGCCCATTTTGATGAAGGATTACATTTAGCTGATTTCTAGTTTGTTATTCAGCATCAATAT CTAGAACCCTACCAGAGCTAAGATGTTGGCACTTGTCAATCATCCTCTAATTCTAGGATATGAAAATAACCCTAACATGT AGAATCACTAATGAATGAAAATCACCCGGAGAATAGAGCTATTTGCTCAACATTTACTTTTGATCTTAGTTTTTATTAGA TCTAGCATGATAGGATAATAGGAAATTGCTTCCGATCAGAATTATGTGCAAATTGTGTAACCAGACATGCATTAAATCTG ATGGAGCTCATGTGCTTGCAGGTTATGTTGCTAGGACACAATGACAAATACACAGCTGATAAAATCATGAGAGTAACAAT TGCCTTCAACCGGTTTGCTAGTGGCCTAATTGAAAGGATGCCAAGGTAGTAATAGTAAGAGTATGGACTGATGAATTAAT TTGCATATAGTCAATCAAAATTTGATAATTGACTTGTTGATGAACATGTATATATTTGCAGGGTGAGATTTGGTTATGCC CATGTGGTCAACAACAAATATGAGGAGTGGAAAATGTATGCTATAGGCGGCAGTGCCAACCCTACCATTTTAAGTGAAGG GAACTATTTTATAGCACCAAATAACCCAAATGCAAAACAGGTAGCAACACAGTAGTAAGAAATTTATATAGTACATATTG AGATACAGGATGAAAAAATACAGTTAAACCAAAATCATGTTGGACAAGTGCAAAAGTTAAGAGAAGTTACTTTTGTCCAC CATGATTTTGATGCACTATGATTTTCAATCGTGTATCAAATTAAACAATTTCAGATACTGAGTATGGTTCTTGTATGATA GGTTACCAAGAGGGAGTTGAATGAAAACGGGAAGAACTGGAAATGGAGGTCTTCTAAGGATGTGTTTGTAAATGGTGCTT ACTTTGTACCATCTGGGTATGGAAGTTGTGCCCCAAATTATACACCTGCTCAGTCTTTTGCTGTTGCTCCAGCGTCCACT GTGCCTGCAATAACACTCAATGCAGGTCCCACAACTTGTGTTGTTGGGAAAGCATGTTAA
CDS sequence (LotjaGi4g1v0012100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCTCAACCACACTCCTCTTACTTTCATTCTTTGTTCTCCACCTTGCATTATTGGTTAATAAACCATTCCTTAA TGTGATAGATTCTTGTTGGCGTGCCAAATCAAATTGGGCCTCAAATCGCAAAGCTTTAGCTGATTGTGCAATTGGATTTG GTAAAAGTGCAATTGGAGGCAAGTATGGTGCAATATATGTAGTCATAGATTCCTCTGATAACCCTGCAAACCCAAAACCA GGAACACTTCGTTATGGTGCAATCCAAACACAGCCTCTCTGGATCATTTTTGCCAGAGACATGGTTATCACACTTGGGAA TGAGCTTATCATGAACAGTTACAAGACAATTGATGGTAGAGGAGCTAAAGTGGTGATTGGAAATGGGCCTTGTATTACAA TTCAAGGTGTTAGCCATGTTATTGTGCATGGCATTAGCATCCATGATTGTAAACCAGGAAAAAGTGGCCTTGTGAGGAGT AGTGTTGATCATGTTGGTCATAGACGAGGCTCTGATGGAGATGGCATTAGCATATTTGCTTCCTCAAATGTTTGGATCGA TCATTGCTTTTTGGCTCGTTGCACTGATGGACTAATTGATATCGTTCATGCCTCAACAGCCATTACCATTTCTAACAATT ACTTCACCCAGCATGACAAAGTTATGTTGCTAGGACACAATGACAAATACACAGCTGATAAAATCATGAGAGTAACAATT GCCTTCAACCGGTTTGCTAGTGGCCTAATTGAAAGGATGCCAAGGGTGAGATTTGGTTATGCCCATGTGGTCAACAACAA ATATGAGGAGTGGAAAATGTATGCTATAGGCGGCAGTGCCAACCCTACCATTTTAAGTGAAGGGAACTATTTTATAGCAC CAAATAACCCAAATGCAAAACAGGTTACCAAGAGGGAGTTGAATGAAAACGGGAAGAACTGGAAATGGAGGTCTTCTAAG GATGTGTTTGTAAATGGTGCTTACTTTGTACCATCTGGGTATGGAAGTTGTGCCCCAAATTATACACCTGCTCAGTCTTT TGCTGTTGCTCCAGCGTCCACTGTGCCTGCAATAACACTCAATGCAGGTCCCACAACTTGTGTTGTTGGGAAAGCATGTT AA
Protein sequence (LotjaGi4g1v0012100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSTTLLLLSFFVLHLALLVNKPFLNVIDSCWRAKSNWASNRKALADCAIGFGKSAIGGKYGAIYVVIDSSDNPANPKP GTLRYGAIQTQPLWIIFARDMVITLGNELIMNSYKTIDGRGAKVVIGNGPCITIQGVSHVIVHGISIHDCKPGKSGLVRS SVDHVGHRRGSDGDGISIFASSNVWIDHCFLARCTDGLIDIVHASTAITISNNYFTQHDKVMLLGHNDKYTADKIMRVTI AFNRFASGLIERMPRVRFGYAHVVNNKYEEWKMYAIGGSANPTILSEGNYFIAPNNPNAKQVTKRELNENGKNWKWRSSK DVFVNGAYFVPSGYGSCAPNYTPAQSFAVAPASTVPAITLNAGPTTCVVGKAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 373 | 353 | - | – | |
| PANTHER | 23 | 373 | 351 | 5.6E-206 | – | |
| PANTHER | 23 | 373 | 351 | 5.6E-206 | – | |
| Gene3D | 26 | 366 | 341 | 3.5E-120 | ||
| SUPERFAMILY | 27 | 364 | 338 | 5.03E-98 | ||
| PRINTS | 49 | 66 | 18 | 1.0E-79 | ||
| PRINTS | 72 | 97 | 26 | 1.0E-79 | ||
| SMART | 100 | 297 | 198 | 1.3E-97 | ||
| PRINTS | 108 | 124 | 17 | 1.0E-79 | ||
| Pfam | 111 | 291 | 181 | 5.5E-27 | ||
| PRINTS | 172 | 193 | 22 | 1.0E-79 | ||
| PRINTS | 252 | 271 | 20 | 1.0E-79 | ||
| PRINTS | 274 | 293 | 20 | 1.0E-79 | ||
| PRINTS | 314 | 338 | 25 | 1.0E-79 | ||
| PRINTS | 344 | 367 | 24 | 1.0E-79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0012100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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