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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0012300 |
| Transcript ID | LotjaGi4g1v0012300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-type anion channel; TAIR: AT1G62280.1 SLAC1 homologue 1; Swiss-Prot: sp|Q5E930|SLAH1_ARATH S-type anion channel SLAH1; TrEMBL-Plants: tr|I3SDT0|I3SDT0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0012300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1518455..1523577) extracted from Lotus japonicus Gifu genome v1.2.
AATATATCTTTATTTGCTCACTTCAAAAGTTAATTCACTTTACGGAACTGTTTCCCCATTTTGAAATCAATGTTGGCTAG CACTATAAATATCAGGACAAAATGAGAGAACTAAACATCATTTTTACGAATAGCTTTACAACTATGATTAAGATGGGTGA AGCTGAGAGCAAGCCATCAATTGAGGTTGTGGTATGTGCTAATTCTATGAACAATACTAGTGCAAACAACCACCAGTCAC ACCCATCACATTCACCAATCTTAACCAAGATCCATGCTGGCTACTTTTTCATTAGTCTTTCATTTGGTGCACAAGCTTTG CTGTGGAAGAGTTTGAGTGAACGTAACAAGGACTCACAAACTCTATGGCAAAGTTTTAATTTGATGCCACATGTTGCATT TCTACTACTATGGTCTCTTTCAGTGCTCATTGCAACTACTCTGTCTTTTCTTTACATGCTCAAATGCATCTTCCACTTTG ATATGGTGAAGGAGGAGTTTTCACACTGTATTGGAGTGAACTACATGTATGCTCCTTGGATTTCATGGCTTCTCATGCTT CAATCAGCACCAATGATTGTTCCCAGAACTTTTCACTACCAATTTCTCTGCTTGGCCTTTTCATTTGCAATATTGCTGCT TGATGTCAAACTCTATGGACAATGGTTCACAACAGAAAAGAGGTTTCTGTCAGTGGTTGCTAACCCTGTGAGCCATGTTT CAGTTATAGGGAACTTGGTGGCGGCTCAAGTGATAACAGAAATTGGTTGGAAAGAGTGTGGGATTTCAATGTTCTCACTT GGAATGGTTCATTATTTGATTCTGTTTGTGACACTGTATCAACGTTTGACAAGTAGCAACCAGTTTCCCACAGTGCTGAG GCCAGCTTACTTCTTGTTTTTTGCTGCACCAAGCATTGCAAGTTTGGCTTGGAAATCCATCACAGGTGGTTTTCTCATCC CATCAAGGATGCTGTTCTTTCTGTCATTGTTCCTTTTCATGTCTCAGGTAGGTCCCTAACTAACTGCTTCTTTGATTCAA GCTCCACAGTTGATCATTTTATTTGATACTTAGATATCCAAACAGTGCAGTCACCTCTTGATTTCAATTCCTGACTATCA GGAGAATAATCCTGCATTCACCTATTCAAGTATTTTTAGCCATCCAATTTTACTCGAACGGCTTACATTCCGAGTTACTG TTTCAAGTTACTTATTACAATTTAAAATACGTCTGAGAAGTTCAGACTCAGACGGCTAAAAAGGGACACCTAATTTTTCT TTTCATCTATCTCTTCATCATGTATCATATCTATTATTTCTCTATCTTATTTTCTTTTTTCAATCTAGGTGTCTAGGGAG TGTGTGCACTGCAGACATCTAACAATCATTCTCCTTTTTTTATCCCTTTTCATTGTAAGAGTAAATTACCTTTTTTTAAT GCAGGCTTGCAGACCAAACTTCTTCAAGAAATCTATGAGAAAATTAACAGTCACTTGGTGGGTGTGCTCATTCCCTTTAA CCTTCCTTGGTCTAGCTTGTGCTGAATATTCTCAAGAAGTGGAAGGTAGCATGGCCTCTGCGTTAATGCTGGTGATATGT GTTGTCTCGGTGCTGGTTTTCATTTCTCTGATGCTCATCTCTGTGCTCAAAATTGAGAGGCTGCTGCTAAAAAAAGCTCC TATTAGTAACTCTAAATGAAGTCTCTTTAACCCAAAAACTGGAATTATACCGATAAACTGCAGAGCTAAGAGCAAATACT CTTGTTTCCCATGTAAGGAAGCGAATGAAAGTACACCAACTTGTCTGAATTATACCCTTTATTCTTCTTTACAATATCTT CTTCATGAAAGAAGAACATTAGGTAGAAGGATAATGATAAATAAACACATTTTTATGGTACTAATCAAACACTAATGGTT TCTTTTGAAACTATCAAACACTAATGTTTGTCATAAAGAAAAATGGTAAAATAATTGTCTAGGCAAAAGAAATGAGGAGG AGGATGACCAACATGCCTTGAAATTATTGATAGACATCCACAGTTCCACACAGTGCACACATCCAATTGATATGGAGAAA TAAAAGTGAAAGAAATAAATGATTTGATATATAATGGATGCATAAGAGAAAAGAGATGGAGAAAAAAAAATGTATATTGA ATGTCTGCATCTACTACTTCTTAATCTTCCACAACTGTAGCTAAATAACCGCCAATTACACATCGACACGTGTCCTGCTT TTACTTACTTTTTTTTCCTTGATCGATAGGGCCAGAACGACGTCGTTCTCCATTCATCTCTGTTCTCATGAACCCTAAGC TGGCAATCACGTGTTTGCTCTCCCCTTCTACCCACTCCATCGTACCATTCATCATCTTCCGTTTCTCTTCCGCCTCCATT CGTGCATAACTTTTCTTTGATTTGTCTCTTCTACGGCAGTACCAACGTCACATATATCACGCGTTCCAGCCAAGATCGAC GTCACCCTGACCAGAAGATCTGCTTTCCACGATCTGCGGCTTCTTCTCATGGCTTCTCCGGTGATGGCTTTCACGTCAAC CCTTCAACCATTTCGTGGGTAAGCTTCGGAACAGTTCTCCATTGATCTTGAACTCACTGTAGCTTAGCACATCTCTTACG TTTCTTCCTGATTTCGTCCTTTATTTGAATTTTTTATCTGATAGTTTTGATTAGATTGAGGGATTTGGTACTTGCTTTGC AACCATTACCTATGGTTAGATTGGGTTCATTAGTTACTCATGCATCTGTTATTTCCATTCTGATATGCATCTGTCATTTC CACTCTGATTTGAAGTTGGGATTAGGTTTTTAGGTCTAGGGTTATAGGTGGATTGCACAACCTATTCTCCTTTGAATTTT TTATCAGATCCCCTTGCCTATAAATTCTCACACAACCCTCACTCCAGCACCATTTCCATTGTGTGTGTTAGTTAGTAATT TAGCATTTCTATCTGGTGTGTGTTAGTAACTTAGCAGTTCAAGTCACAGTAGTACAACTCAAACCATATGTTTAATTGTT CTAACCTTTTCTTTGTATGTCTTTTACAGCTGGGACAGAATTGCAGAGAAACTGAGTTTCATGTTGGTCTTTGGAGATTT AGTGTGGATTGGTATGACTCAATGCAGGAAGAGAACTGTTCAAAAAATGTGGAAGTCTGTGATACATGGCAAGTCCTTGC AGGTTAGGTTTCTGTATTTTGAAGATTTACTATTATTTCTAAAATTTTGGTTTTGTTCTAAAGCTATATATGTTTTTCAA TGGCAAGTCCTTGGCAGGTATTGTTTTTCAATGCAGACGCTTAAGGATGATTGAGGGGAGCTCAAAGTTGCAAAGCCCTC TCTCAGTCCTTCTCTCCCTTGATTTCCTTCTATATGTATATATGTTATCCCAGAAGATTTCTTATAACTGGTGCATGTAT TTATGTAAACTCATACTCACAACATCTTTGGAAGAAAATGATTGTGAATATAACCTGAAGGAAACCAATTCAATGATTTG AAAGGCTTTAGTTAAATTACTTAATTTCAAAGCTGGGACATAGAAATATATAGGGAATGTTTAACATTGGCATGGTATAG CATTGGCAGATTCACTTACATGTTAGTAATACAATTTTCTTATGATGCAAAAGTCTGTTTCTATTTGCTTCAAATAATTA CAAATGTTTTAGACATTATAGAGAAATGTCTAGGGGTGTAAGAGGGCTTATCTTCTTTTGAAACTCTCTTTAGCTTCAAG CATAGGTTCTTACAATTTTGTGCTACTTCAATTTCTCTGTTCTTGAGGAGTATTGGTACATGGGCACATGAACTTATCAA GAGAAAAGAAAAAGGGGATTGGAGTAGGGGATGCTTCTATTCTGTATCTTCTGGCTTCTAACTCTTCATTGTATGAGCTA GCCTTGAATTTATCTTTGTTTCAAATGGATTGTTCCCTTGGTGAAGGTAGAAGATTTTGAAGCCTTTGTGGAGAGTGAGC AATCACTCTATGACCGTCTCTTGGTGAAGTAGTTTTAGCTACAGCAACAATATTTGAACAATCATCTACTTCACCAACTG AGTCATGAGAGTAGTTTTAGCTATAGCAGACTTTTTCTTTACTATAGGTAAGGGGGATGTCAAAAGAGTTGTGTTTTATG AGAGTAGTCTTTGAAACAGATTGCAAGTTAGTGGAAAAATAACTCCTATTTCTATATTTTATACTAACCTATCACTTCTT TCTTTCTGAGTCGTGGACAGCTATTGATTGCTTACATCTATTACATAGTCTCTATATTATTGTTTAGTTATGGTCTACCA ATAAAATAGCATGAATTTAAAGCTTGATATTGTTTTTTTCTCTCTTGGCCCCTTTATTTTTATTCTATAGCCTCTTTATT TCTAATTTTGAAGAGATGAGTTCTGATCTGTTGCTGAGAAATTCTCTGATGGTTTTATGTTTTATTGTGCAAGACAATAA AGAGAAAATAGCGAATTCATCAAAAGTTTAAAGTGTTGTCACGGAGCAACTGAACGTTGTAGTTTTAGTTTTTTATAGTC AATGTCAATCCTCAGACAGTTTGTTTCTAATTAGTGACTTCTATTATGTTCATTGGTGGATGCATGCAATCGTTCTACTC ATCCTAGAGGAGGACTTTTATGTAATTCAAGGTTAAGATGAACATTTGTAATGGAGATGTGGATCAAGTTATCTAAGGGG GGCATGCAATATCAAATTCCAATTGTCATTGTTAGTAACAGATTCAAGTGTTTTTATTTTTAAAAAATATATAAGTAGTC TTTACTGAGATGTTTAGCATTTTTATGTGACATGGTTTTTTTGTTAGTATTATTCACTATAGCCTTTAAATAGGCTAATA ACGGCTGGGAGGTTACAAAGTTTTTTTTTTAAAGGGAAAGGGAGGTTACAAAGTTAAAACAGATAAAACATCCTAACTTT CTCCTAAAGTTTAGGCTATGTGCTAAATCATACAACTGACCACTTACACATGACAAAGACTAAAACAATAAAATAAAACT GATAAATAATTATCTAACATTTTTCACACCTCAATAATATTTACACTTTATATTTCTCTCTTCTTTTCTCATGACAATTC TCA
CDS sequence (LotjaGi4g1v0012300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGAACTAAACATCATTTTTACGAATAGCTTTACAACTATGATTAAGATGGGTGAAGCTGAGAGCAAGCCATCAAT TGAGGTTGTGGTATGTGCTAATTCTATGAACAATACTAGTGCAAACAACCACCAGTCACACCCATCACATTCACCAATCT TAACCAAGATCCATGCTGGCTACTTTTTCATTAGTCTTTCATTTGGTGCACAAGCTTTGCTGTGGAAGAGTTTGAGTGAA CGTAACAAGGACTCACAAACTCTATGGCAAAGTTTTAATTTGATGCCACATGTTGCATTTCTACTACTATGGTCTCTTTC AGTGCTCATTGCAACTACTCTGTCTTTTCTTTACATGCTCAAATGCATCTTCCACTTTGATATGGTGAAGGAGGAGTTTT CACACTGTATTGGAGTGAACTACATGTATGCTCCTTGGATTTCATGGCTTCTCATGCTTCAATCAGCACCAATGATTGTT CCCAGAACTTTTCACTACCAATTTCTCTGCTTGGCCTTTTCATTTGCAATATTGCTGCTTGATGTCAAACTCTATGGACA ATGGTTCACAACAGAAAAGAGGTTTCTGTCAGTGGTTGCTAACCCTGTGAGCCATGTTTCAGTTATAGGGAACTTGGTGG CGGCTCAAGTGATAACAGAAATTGGTTGGAAAGAGTGTGGGATTTCAATGTTCTCACTTGGAATGGTTCATTATTTGATT CTGTTTGTGACACTGTATCAACGTTTGACAAGTAGCAACCAGTTTCCCACAGTGCTGAGGCCAGCTTACTTCTTGTTTTT TGCTGCACCAAGCATTGCAAGTTTGGCTTGGAAATCCATCACAGGTGGTTTTCTCATCCCATCAAGGATGCTGTTCTTTC TGTCATTGTTCCTTTTCATGTCTCAGGCTTGCAGACCAAACTTCTTCAAGAAATCTATGAGAAAATTAACAGTCACTTGG TGGGTGTGCTCATTCCCTTTAACCTTCCTTGGTCTAGCTTGTGCTGAATATTCTCAAGAAGTGGAAGGTAGCATGGCCTC TGCGTTAATGCTGGTGATATGTGTTGTCTCGGTGCTGGTTTTCATTTCTCTGATGCTCATCTCTGTGCTCAAAATTGAGA GGCTGCTGCTAAAAAAAGCTCCTATTAGTAACTCTAAATGA
Protein sequence (LotjaGi4g1v0012300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRELNIIFTNSFTTMIKMGEAESKPSIEVVVCANSMNNTSANNHQSHPSHSPILTKIHAGYFFISLSFGAQALLWKSLSE RNKDSQTLWQSFNLMPHVAFLLLWSLSVLIATTLSFLYMLKCIFHFDMVKEEFSHCIGVNYMYAPWISWLLMLQSAPMIV PRTFHYQFLCLAFSFAILLLDVKLYGQWFTTEKRFLSVVANPVSHVSVIGNLVAAQVITEIGWKECGISMFSLGMVHYLI LFVTLYQRLTSSNQFPTVLRPAYFLFFAAPSIASLAWKSITGGFLIPSRMLFFLSLFLFMSQACRPNFFKKSMRKLTVTW WVCSFPLTFLGLACAEYSQEVEGSMASALMLVICVVSVLVFISLMLISVLKIERLLLKKAPISNSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 58 | 58 | - | – | |
| PANTHER | 35 | 382 | 348 | 1.3E-161 | – | |
| PANTHER | 35 | 382 | 348 | 1.3E-161 | ||
| Gene3D | 53 | 377 | 325 | 4.7E-54 | ||
| TMHMM | 53 | 75 | 23 | - | – | |
| Pfam | 57 | 366 | 310 | 3.1E-35 | ||
| Phobius | 59 | 78 | 20 | - | – | |
| Phobius | 79 | 97 | 19 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 98 | 120 | 23 | - | – | |
| Phobius | 121 | 140 | 20 | - | – | |
| TMHMM | 133 | 153 | 21 | - | – | |
| Phobius | 141 | 160 | 20 | - | – | |
| Phobius | 161 | 165 | 5 | - | – | |
| TMHMM | 163 | 182 | 20 | - | – | |
| Phobius | 166 | 186 | 21 | - | – | |
| Phobius | 187 | 197 | 11 | - | – | |
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 198 | 218 | 21 | - | – | |
| Phobius | 219 | 229 | 11 | - | – | |
| TMHMM | 227 | 246 | 20 | - | – | |
| Phobius | 230 | 249 | 20 | - | – | |
| Phobius | 250 | 260 | 11 | - | – | |
| TMHMM | 258 | 280 | 23 | - | – | |
| Phobius | 261 | 280 | 20 | - | – | |
| Phobius | 281 | 285 | 5 | - | – | |
| Phobius | 286 | 304 | 19 | - | – | |
| TMHMM | 290 | 309 | 20 | - | – | |
| Phobius | 305 | 315 | 11 | - | – | |
| Phobius | 316 | 333 | 18 | - | – | |
| TMHMM | 316 | 333 | 18 | - | – | |
| Phobius | 334 | 344 | 11 | - | – | |
| Phobius | 345 | 370 | 26 | - | – | |
| TMHMM | 348 | 370 | 23 | - | – | |
| Phobius | 371 | 386 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular ion homeostasis | Any process involved in the maintenance of an internal steady state of ions at the level of a cell. | ||
| Molecular function | Voltage-gated anion channel activity | Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0012300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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