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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0012300 |
| Transcript ID | LotjaGi4g1v0012300.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-type anion channel; TAIR: AT1G62280.1 SLAC1 homologue 1; Swiss-Prot: sp|Q5E930|SLAH1_ARATH S-type anion channel SLAH1; TrEMBL-Plants: tr|I3SDT0|I3SDT0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0012300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1518579..1521216) extracted from Lotus japonicus Gifu genome v1.2.
TACGAATAGCTTTACAACTATGATTAAGATGGGTGAAGCTGAGAGCAAGCCATCAATTGAGGTTGTGGTATGTGCTAATT CTATGAACAATACTAGTGCAAACAACCACCAGTCACACCCATCACATTCACCAATCTTAACCAAGATCCATGCTGGCTAC TTTTTCATTAGTCTTTCATTTGGTGCACAAGCTTTGCTGTGGAAGAGTTTGAGTGAACGTAACAAGGACTCACAAACTCT ATGGCAAAGTTTTAATTTGATGCCACATGTTGCATTTCTACTACTATGGTCTCTTTCAGTGCTCATTGCAACTACTCTGT CTTTTCTTTACATGCTCAAATGCATCTTCCACTTTGATATGGTGAAGGAGGAGTTTTCACACTGTATTGGAGTGAACTAC ATGTATGCTCCTTGGATTTCATGGCTTCTCATGCTTCAATCAGCACCAATGATTGTTCCCAGAACTTTTCACTACCAATT TCTCTGCTTGGCCTTTTCATTTGCAATATTGCTGCTTGATGTCAAACTCTATGGACAATGGTTCACAACAGAAAAGAGGT TTCTGTCAGTGGTTGCTAACCCTGTGAGCCATGTTTCAGTTATAGGGAACTTGGTGGCGGCTCAAGTGATAACAGAAATT GGTTGGAAAGAGTGTGGGATTTCAATGTTCTCACTTGGAATGGTTCATTATTTGATTCTGTTTGTGACACTGTATCAACG TTTGACAAGTAGCAACCAGTTTCCCACAGTGCTGAGGCCAGCTTACTTCTTGTTTTTTGCTGCACCAAGCATTGCAAGTT TGGCTTGGAAATCCATCACAGGTGGTTTTCTCATCCCATCAAGGATGCTGTTCTTTCTGTCATTGTTCCTTTTCATGTCT CAGGTAGGTCCCTAACTAACTGCTTCTTTGATTCAAGCTCCACAGTTGATCATTTTATTTGATACTTAGATATCCAAACA GTGCAGTCACCTCTTGATTTCAATTCCTGACTATCAGGAGAATAATCCTGCATTCACCTATTCAAGTATTTTTAGCCATC CAATTTTACTCGAACGGCTTACATTCCGAGTTACTGTTTCAAGTTACTTATTACAATTTAAAATACGTCTGAGAAGTTCA GACTCAGACGGCTAAAAAGGGACACCTAATTTTTCTTTTCATCTATCTCTTCATCATGTATCATATCTATTATTTCTCTA TCTTATTTTCTTTTTTCAATCTAGGTGTCTAGGGAGTGTGTGCACTGCAGACATCTAACAATCATTCTCCTTTTTTTATC CCTTTTCATTGTAAGAGTAAATTACCTTTTTTTAATGCAGGCTTGCAGACCAAACTTCTTCAAGAAATCTATGAGAAAAT TAACAGTCACTTGGTGGGTGTGCTCATTCCCTTTAACCTTCCTTGGTCTAGCTTGTGCTGAATATTCTCAAGAAGTGGAA GGTAGCATGGCCTCTGCGTTAATGCTGGTGATATGTGTTGTCTCGGTGCTGGTTTTCATTTCTCTGATGCTCATCTCTGT GCTCAAAATTGAGAGGCTGCTGCTAAAAAAAGCTCCTATTAGTAACTCTAAATGAAGTCTCTTTAACCCAAAAACTGGAA TTATACCGATAAACTGCAGAGCTAAGAGCAAATACTCTTGTTTCCCATGTAAGGAAGCGAATGAAAGTACACCAACTTGT CTGAATTATACCCTTTATTCTTCTTTACAATATCTTCTTCATGAAAGAAGAACATTAGGTAGAAGGATAATGATAAATAA ACACATTTTTATGGTACTAATCAAACACTAATGGTTTCTTTTGAAACTATCAAACACTAATGTTTGTCATAAAGAAAAAT GGTAAAATAATTGTCTAGGCAAAAGAAATGAGGAGGAGGATGACCAACATGCCTTGAAATTATTGATAGACATCCACAGT TCCACACAGTGCACACATCCAATTGATATGGAGAAATAAAAGTGAAAGAAATAAATGATTTGATATATAATGGATGCATA AGAGAAAAGAGATGGAGAAAAAAAAATGTATATTGAATGTCTGCATCTACTACTTCTTAATCTTCCACAACTGTAGCTAA ATAACCGCCAATTACACATCGACACGTGTCCTGCTTTTACTTACTTTTTTTTCCTTGATCGATAGGGCCAGAACGACGTC GTTCTCCATTCATCTCTGTTCTCATGAACCCTAAGCTGGCAATCACGTGTTTGCTCTCCCCTTCTACCCACTCCATCGTA CCATTCATCATCTTCCGTTTCTCTTCCGCCTCCATTCGTGCATAACTTTTCTTTGATTTGTCTCTTCTACGGCAGTACCA ACGTCACATATATCACGCGTTCCAGCCAAGATCGACGTCACCCTGACCAGAAGATCTGCTTTCCACGATCTGCGGCTTCT TCTCATGGCTTCTCCGGTGATGGCTTTCACGTCAACCCTTCAACCATTTCGTGGGTAAGCTTCGGAACAGTTCTCCATTG ATCTTGAACTCACTGTAGCTTAGCACATCTCTTACGTTTCTTCCTGATTTCGTCCTTTATTTGAATTTTTTATCTGATAG TTTTGATTAGATTGAGGGATTTGGTACTTGCTTTGCAACCATTACCTATGGTTAGATTGGGTTCATTAGTTACTCATG
CDS sequence (LotjaGi4g1v0012300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTAAGATGGGTGAAGCTGAGAGCAAGCCATCAATTGAGGTTGTGGTATGTGCTAATTCTATGAACAATACTAGTGC AAACAACCACCAGTCACACCCATCACATTCACCAATCTTAACCAAGATCCATGCTGGCTACTTTTTCATTAGTCTTTCAT TTGGTGCACAAGCTTTGCTGTGGAAGAGTTTGAGTGAACGTAACAAGGACTCACAAACTCTATGGCAAAGTTTTAATTTG ATGCCACATGTTGCATTTCTACTACTATGGTCTCTTTCAGTGCTCATTGCAACTACTCTGTCTTTTCTTTACATGCTCAA ATGCATCTTCCACTTTGATATGGTGAAGGAGGAGTTTTCACACTGTATTGGAGTGAACTACATGTATGCTCCTTGGATTT CATGGCTTCTCATGCTTCAATCAGCACCAATGATTGTTCCCAGAACTTTTCACTACCAATTTCTCTGCTTGGCCTTTTCA TTTGCAATATTGCTGCTTGATGTCAAACTCTATGGACAATGGTTCACAACAGAAAAGAGGTTTCTGTCAGTGGTTGCTAA CCCTGTGAGCCATGTTTCAGTTATAGGGAACTTGGTGGCGGCTCAAGTGATAACAGAAATTGGTTGGAAAGAGTGTGGGA TTTCAATGTTCTCACTTGGAATGGTTCATTATTTGATTCTGTTTGTGACACTGTATCAACGTTTGACAAGTAGCAACCAG TTTCCCACAGTGCTGAGGCCAGCTTACTTCTTGTTTTTTGCTGCACCAAGCATTGCAAGTTTGGCTTGGAAATCCATCAC AGGTGGTTTTCTCATCCCATCAAGGATGCTGTTCTTTCTGTCATTGTTCCTTTTCATGTCTCAGGCTTGCAGACCAAACT TCTTCAAGAAATCTATGAGAAAATTAACAGTCACTTGGTGGGTGTGCTCATTCCCTTTAACCTTCCTTGGTCTAGCTTGT GCTGAATATTCTCAAGAAGTGGAAGGTAGCATGGCCTCTGCGTTAATGCTGGTGATATGTGTTGTCTCGGTGCTGGTTTT CATTTCTCTGATGCTCATCTCTGTGCTCAAAATTGAGAGGCTGCTGCTAAAAAAAGCTCCTATTAGTAACTCTAAATGA
Protein sequence (LotjaGi4g1v0012300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKMGEAESKPSIEVVVCANSMNNTSANNHQSHPSHSPILTKIHAGYFFISLSFGAQALLWKSLSERNKDSQTLWQSFNL MPHVAFLLLWSLSVLIATTLSFLYMLKCIFHFDMVKEEFSHCIGVNYMYAPWISWLLMLQSAPMIVPRTFHYQFLCLAFS FAILLLDVKLYGQWFTTEKRFLSVVANPVSHVSVIGNLVAAQVITEIGWKECGISMFSLGMVHYLILFVTLYQRLTSSNQ FPTVLRPAYFLFFAAPSIASLAWKSITGGFLIPSRMLFFLSLFLFMSQACRPNFFKKSMRKLTVTWWVCSFPLTFLGLAC AEYSQEVEGSMASALMLVICVVSVLVFISLMLISVLKIERLLLKKAPISNSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 44 | 44 | - | – | |
| PANTHER | 22 | 368 | 347 | 9.2E-162 | – | |
| PANTHER | 22 | 368 | 347 | 9.2E-162 | ||
| Gene3D | 39 | 363 | 325 | 4.1E-54 | ||
| TMHMM | 39 | 61 | 23 | - | – | |
| Pfam | 43 | 352 | 310 | 2.7E-35 | ||
| Phobius | 45 | 64 | 20 | - | – | |
| Phobius | 65 | 83 | 19 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| Phobius | 84 | 106 | 23 | - | – | |
| Phobius | 107 | 126 | 20 | - | – | |
| TMHMM | 119 | 139 | 21 | - | – | |
| Phobius | 127 | 146 | 20 | - | – | |
| Phobius | 147 | 151 | 5 | - | – | |
| TMHMM | 149 | 168 | 20 | - | – | |
| Phobius | 152 | 172 | 21 | - | – | |
| Phobius | 173 | 183 | 11 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| Phobius | 184 | 204 | 21 | - | – | |
| Phobius | 205 | 215 | 11 | - | – | |
| TMHMM | 213 | 232 | 20 | - | – | |
| Phobius | 216 | 235 | 20 | - | – | |
| Phobius | 236 | 246 | 11 | - | – | |
| TMHMM | 244 | 266 | 23 | - | – | |
| Phobius | 247 | 266 | 20 | - | – | |
| Phobius | 267 | 271 | 5 | - | – | |
| Phobius | 272 | 290 | 19 | - | – | |
| TMHMM | 276 | 295 | 20 | - | – | |
| Phobius | 291 | 301 | 11 | - | – | |
| Phobius | 302 | 319 | 18 | - | – | |
| TMHMM | 302 | 319 | 18 | - | – | |
| Phobius | 320 | 330 | 11 | - | – | |
| Phobius | 331 | 356 | 26 | - | – | |
| TMHMM | 334 | 356 | 23 | - | – | |
| Phobius | 357 | 372 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular ion homeostasis | Any process involved in the maintenance of an internal steady state of ions at the level of a cell. | ||
| Molecular function | Voltage-gated anion channel activity | Enables the transmembrane transfer of an anion by a voltage-gated channel. An anion is a negatively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0012300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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