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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0013400 |
| Transcript ID | LotjaGi4g1v0013400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tyrosyl-DNA phosphodiesterase 2; TAIR: AT1G11800.1 endonuclease/exonuclease/phosphatase family protein; Swiss-Prot: sp|A5D8M0|TYDP2_XENLA Tyrosyl-DNA phosphodiesterase 2; TrEMBL-Plants: tr|I3S456|I3S456_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0013400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1701434..1704188) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATTGTAAAAAAAAAAAGGAAAAAAAAAAACACCCATTTTACCCATACGGCATGTAGAAGGTGGCGTTTTGATTACT TTTGGGCTTGAAATTTGAAATGCAACGAATGGTCATCGCGCTGGTTCCATCACCGCCGAGTCTGATATTAAACCCTAGAA ACATTCAAACCTACCAAATTGGCACCTTTCTTCTCCACCACACTCCTCGTTCATCTCCAATAATATCAATGTCTTCTTGG TCCTGCATTAAATGCACCTTCCTCAATCCTCCCTCGCAAAAATCCCAATGCCAAATCTGCTCCTCCTCTCCACCACCATC GCCACCACCCTCCTCCTCTTCCTCCTCCCCGCCAAAATGGTCATGCAAGGCTTGCACTCTGCTCAACCCTTACAAGAACT CAACCTGCGAACTCTGCGGTACTCGTTCCCCTGTTCTCTCCCTTTCCAACTCCAACTTGCTCCAATTGAGTGACGATGAT GATGATCGCGATTCTTCTGTTGGCTCTGTTTTCTTCCCTCTTCGATCTTGCAAGAGGAAGTTCGACTCCCTTGATCACGC TCAACCATCAACAGTAGCCACCGCTTCCAGTAACAAAAAGAAGGCCATCGATTTCACCGGTGATGACCTTGTTTTGTATT GTACCTTTCATTTCACTATCTGTAATATGCATTTTTTTTACCCTAACAGCTTCAATTTTGTGTTAGCAGTGAGCGTTGCT TCAGGAAAAGATGTTGCTAGTTCAATGAAGATTTTGAGTTCAGGAAAAGATGTTGGTACTTCACTGAAGATTTTGAGTTA CAATGTTTGGTTTCGCGAAGACTTGGAGCTGCAAAAGAGGATGAAAGCTATTGGTGACCTTGTTCACTTGCATTCCCCGG ATTTAATCTGTTTTCAGGTTTCACTATTATCACTACTCTACCTGTGTTCTCTGTATTCAATTTTCTTGTTTGATTTTTAA TTTATGGGGCTTTATTTGATTTGCATTGCTTGTGTTTCAGGAGGTTACTCCCAATATATATGACATTTTCAAGAAATCTA CCTGGTGGAGTGTGTATCAATGTTCTGTGTCTGCTGATAAGGCTTATTCAAGACCCTACTTTTGTATGCTGGTAAATTTC ATATCATTCATCCTTGTTTTTATGTGTCTATAATGTCTCATTCTTTTAGTATATAAATTTTCTCTTTTGATTTGAGATTT ATGTTAATTTTATATTGATTTTATTGTTGTGTTACGAATCGCAATCGTGTGGTCTCCTACAATATTAGAACCTGCATGGT TAAGCCTTGTGTTTTCATTGTATATACTTCAATAAGTTGAGTAGTTAGTAAGTTAGTTAGACTTATGTGAAGAATGATAG AGATAATGCTCATTTCATTTTTCTGTTATATAATATCTGAAGTTTGTTGTACCCCCTTGTTTCTTCATGTTGTTTCCATG TGTATCGGTGCTATCATGTCTTATTATGTCTAAAATTTTCCGTGTACCCCCTTGTTTGTCGTCCTGTTGTATACATGTCC CATGATGTTCTGTGGTTTCTAGGCTAACATTTACTTTGTTCTGGGGAAGTCTTGAGAAAGTAGAACTAAATTTGTTCCGT GCTCATATAATTTTATGTTTGATATGTTATAATATTTATGATCCCAGTCATAGTTTTTTACTTGTGTTGGATGTTAAATA CCTTTCAGTAACAACTTTTATTCTGCAATGAGGGAGTTATGTCTGCTGACCTATCTTTCAACTGAATTGCAGTTAAGCAA ACTACCTGTGAAATCTTTCAGCAACAAGTCCTTTAGCAATTCTATAATGGGAAGGGAACTTTGCATTGCTGAGGTTGAAG CTGCAAATGGCAAGTCATTGGTTATTGCCACTAGCCATCTTGAGAGTCCCTGTCCAGGCCCTCCGAAATGGGATCAGATG TACAGCAAGGAACGAGTAGAGCAGGCGAACGAGGCTGTAAACCTGCTCAAGAAGCACCCTAATGTTGTTTTTGGAGGTGA CATGAACTGGGATGACAAACTGGATGGTCAATATCCTTCACAAGATGGGTGGATCGATGCCTGGTCTCAGCTAAGGCCAG ATCAAAGTGGGTGGACGTATGATACTAAGTCGAACCAGATGTTGTCAGGCAACCGTACTCTCCAAAAGCGATTAGATCGT TTCATTTGCCGTTTAAGTGATCTTAAGATAAGCAGCATTGACATGATTGGGATGGATGCAATACCTGGACTGTCATACAT CAAAGAGAAGAAAGTAAGAAAAGAGACAAAACAACTGGTACTCCCTGTTCTGCCTAGTGATCATTATGGTCTGCTTTTGA CAATTACTAGTAAATGACTCCACTCTATACAAATCTAACTTGTGTATCCATTTTTCATACTCTGGGCTGATGCTGTATCC ATGGCATGCGTAGCATGCAGTTTTGTAAAGATTACTGGGAAAATGTAAAGCAGGGTTATTGGCATTGTAGATGGGACAGT GCTACTTTTGAAAGCATTGCTACTTATTTCAGAGCTTTTTATCTGCCATTTTGCTCATTTTGAAAGCATTGCACTTGCTT TATAGACTTCAATAGGAATTAGAAATTTTTGTACCTGAAAGCTGTTATCATATCAGCAGTGGTGAGGGGATGCCAGTGTT GAACTGTTATAGTCCACGTATATTCAATGCCTACAGGCCACAGACAGTAATTCATCACCACAGATATCCCGTGTTCTTAT TTCAAATGTTTGGCCTGAAAGTTCAGGTAATGGGA
CDS sequence (LotjaGi4g1v0013400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACGAATGGTCATCGCGCTGGTTCCATCACCGCCGAGTCTGATATTAAACCCTAGAAACATTCAAACCTACCAAAT TGGCACCTTTCTTCTCCACCACACTCCTCGTTCATCTCCAATAATATCAATGTCTTCTTGGTCCTGCATTAAATGCACCT TCCTCAATCCTCCCTCGCAAAAATCCCAATGCCAAATCTGCTCCTCCTCTCCACCACCATCGCCACCACCCTCCTCCTCT TCCTCCTCCCCGCCAAAATGGTCATGCAAGGCTTGCACTCTGCTCAACCCTTACAAGAACTCAACCTGCGAACTCTGCGG TACTCGTTCCCCTGTTCTCTCCCTTTCCAACTCCAACTTGCTCCAATTGAGTGACGATGATGATGATCGCGATTCTTCTG TTGGCTCTGTTTTCTTCCCTCTTCGATCTTGCAAGAGGAAGTTCGACTCCCTTGATCACGCTCAACCATCAACAGTAGCC ACCGCTTCCAGTAACAAAAAGAAGGCCATCGATTTCACCGTGAGCGTTGCTTCAGGAAAAGATGTTGCTAGTTCAATGAA GATTTTGAGTTCAGGAAAAGATGTTGGTACTTCACTGAAGATTTTGAGTTACAATGTTTGGTTTCGCGAAGACTTGGAGC TGCAAAAGAGGATGAAAGCTATTGGTGACCTTGTTCACTTGCATTCCCCGGATTTAATCTGTTTTCAGGAGGTTACTCCC AATATATATGACATTTTCAAGAAATCTACCTGGTGGAGTGTGTATCAATGTTCTGTGTCTGCTGATAAGGCTTATTCAAG ACCCTACTTTTGTATGCTGTTAAGCAAACTACCTGTGAAATCTTTCAGCAACAAGTCCTTTAGCAATTCTATAATGGGAA GGGAACTTTGCATTGCTGAGGTTGAAGCTGCAAATGGCAAGTCATTGGTTATTGCCACTAGCCATCTTGAGAGTCCCTGT CCAGGCCCTCCGAAATGGGATCAGATGTACAGCAAGGAACGAGTAGAGCAGGCGAACGAGGCTGTAAACCTGCTCAAGAA GCACCCTAATGTTGTTTTTGGAGGTGACATGAACTGGGATGACAAACTGGATGGTCAATATCCTTCACAAGATGGGTGGA TCGATGCCTGGTCTCAGCTAAGGCCAGATCAAAGTGGGTGGACGTATGATACTAAGTCGAACCAGATGTTGTCAGGCAAC CGTACTCTCCAAAAGCGATTAGATCGTTTCATTTGCCGTTTAAGTGATCTTAAGATAAGCAGCATTGACATGATTGGGAT GGATGCAATACCTGGACTGTCATACATCAAAGAGAAGAAAGTAAGAAAAGAGACAAAACAACTGGTACTCCCTGTTCTGC CTAGTGATCATTATGGTCTGCTTTTGACAATTACTAGTAAATGA
Protein sequence (LotjaGi4g1v0013400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRMVIALVPSPPSLILNPRNIQTYQIGTFLLHHTPRSSPIISMSSWSCIKCTFLNPPSQKSQCQICSSSPPPSPPPSSS SSSPPKWSCKACTLLNPYKNSTCELCGTRSPVLSLSNSNLLQLSDDDDDRDSSVGSVFFPLRSCKRKFDSLDHAQPSTVA TASSNKKKAIDFTVSVASGKDVASSMKILSSGKDVGTSLKILSYNVWFREDLELQKRMKAIGDLVHLHSPDLICFQEVTP NIYDIFKKSTWWSVYQCSVSADKAYSRPYFCMLLSKLPVKSFSNKSFSNSIMGRELCIAEVEAANGKSLVIATSHLESPC PGPPKWDQMYSKERVEQANEAVNLLKKHPNVVFGGDMNWDDKLDGQYPSQDGWIDAWSQLRPDQSGWTYDTKSNQMLSGN RTLQKRLDRFICRLSDLKISSIDMIGMDAIPGLSYIKEKKVRKETKQLVLPVLPSDHYGLLLTITSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 37 | 466 | 430 | 3.6E-168 | – | |
| PANTHER | 37 | 466 | 430 | 3.6E-168 | – | |
| SMART | 45 | 70 | 26 | 2.7E-4 | ||
| MobiDBLite | 65 | 84 | 20 | - | – | |
| Gene3D | 79 | 131 | 53 | 2.0E-6 | – | |
| SUPERFAMILY | 83 | 109 | 27 | 7.46E-6 | ||
| SMART | 85 | 109 | 25 | 1.5E-4 | ||
| ProSitePatterns | 87 | 106 | 20 | - | ||
| Gene3D | 192 | 466 | 275 | 6.6E-77 | ||
| SUPERFAMILY | 197 | 464 | 268 | 4.84E-33 | ||
| CDD | 199 | 464 | 266 | 1.00174E-81 | – | |
| Pfam | 202 | 414 | 213 | 2.1E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0013400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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