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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0016800 |
| Transcript ID | LotjaGi4g1v0016800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glutamate decarboxylase; TAIR: AT2G02010.1 glutamate decarboxylase 4; Swiss-Prot: sp|Q9ZPS3|DCE4_ARATH Glutamate decarboxylase 4; TrEMBL-Plants: tr|C6TF12|C6TF12_SOYBN Glutamate decarboxylase; Found in the gene: LotjaGi4g1v0016800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2158292..2161740) extracted from Lotus japonicus Gifu genome v1.2.
AAGTACCACAACCTGGGGGTCATGTTCAATCCTCCTCACCAAATAGCCAAAAAAGGTCAAAAGAAACACCTTATTACTAC CTTAATTTCCAACTTTTTCTCTCTTTGCAATTCCTGCTTTCATTGAGAACAACAACATATATTATAATGCACTTCACCTT GGCTTTTCCAAAACCAGGGTCTGATCTCTGTCTTCGCTCTAACTTTGCTTCTCGTTATGTCAGGGCTTCTCTTCCTAGGT ATGTACATGGTTACATGGATGCATACACAAATCATCATCATCACCACCTTCTTAGCTTTATCTTCTTTGACCAAAAATGC ACTTTTAGTTTTTTTTGTGGGGAAGTAATGAAGAGTTTTGGTGATGATTCAGGTTCAGCATGCCAGAGAACTCTATGCCA AAGAAGGCTGCATACCAGAACATACACGATGAGCTGAAGCTTGATGCGAATCCAAAGATGAACTTGGCTTCCTTTGTAAC CACATCCATGGAGGAAGAATGTAACAAGCTCATGATGGAATCCATCAACAAGAACTATGTAGACATGGATGAGTACCCTG CTACCACTGATCTTCATGTACTTAATTTCTCTCTTCCTCAACTTATTCTCTTGGTTATATAATACATAGCTGTATTTTAT TGCACTAAGAAGTTCTTATCATCCTGGTCTGTGGAGGCCGGAAAAGAGGGAAATGGATTTGTGCAGTCAATTTCTGGTGC AGTCACTAGTCACTGTAGTCAAGGAATCTCGGCCATTGGATGAAAAGCAGAAAGCTCATATTCAGAGAACATGTTATACA TATGATTTGTCAAACTTGAAAATTGAACATCTTATCTTCTTTTACGGACTGTAGTGATGGCACCAAAAATTGACTGCAGT CAAGCCGGATCCCGGAAAGAGGAAGATTTTTCTTCTTGAATATTTATATTTTAGAACATAAAAGTGTAATCATTTTTGGT GTTCAACCCTGCACTGTATCTTATGTTTTTCCTGGTTTATACTTATTAAAAACAGAATCGATGTGTAAACATGATAGCAC GTTTGTTCCATGCTGAAATTGGAGAAAATGAGAGTGCAATTGGAGCAGGAACTGTTGGATCATCTGAGGCCATAATGCTG GCAGGCCTTGCCTTCAAGAAGAGGTGGCAGAACAAGCGCAAGGCTGAGGGCAAGCCCTATGATAAGCCCAACATTGTCAC AGGTGCCAATGTGCAGGTATTAATTTCTTGTTCCCAACAATTGTTAAAAACTTCTTAGCAATTCCAAATGATAATTAAAT GGATTGTTTTTGTGTATGAAGAGCTCATTAATTAAATGCTCAGTATTTTGAGATTTTAAGCTAAATCATATGTTTGATGT TGTATATTGGCTTTGTAAATTAATCAGCAGTAAACTTCTAAGGTTGGTGCTGCAGTATTCATTCCCAAACTTATATTTTT ACAACTAAATATTTGTATCTGATTCAATTTGGCATGAAAAAAGGCCTTGACTTTGTGATTGTAGTTGATGCTCAAAATTT GTCAGCGGCTTTGAATTAATAGAATGTTTCGATCAACTTATTTTTTCCCAAAATCAATTATGGCATCCAAAAACTATTCA CAAAAGCTTTTACCCGGTTTTGATTTTGTCTTTAGATCAATTGTAGAGGGATTTCCAAACATGCTACCAAGAAATTGAAT TATTTGCTTTATTATTGATACGTGTTTTGCATAATACGTATTATATAGGTATGTTGGAAGAAATTTGCTAGTTATTTTGA TGTGGAGTTGAGAGAAGTGAAGCTGAGTGAAGGCAACTACGTGATGGACCCTGCCAAGGCCGTTGAGATGGTGGATGAAA ACACAATTTGTGTGGCTGCAATCTTGGGTTCAACTTACAATGGAGAATTTGAAGATGTCAAGCTCTTGAATGACCTGTTG CTAGAAAAAAACAAGCAAACTGGGTAAGTAATATCCTACTAATTAGACTTGTCCAAATGCGTATACTTAACTTCCTTTAT ACTGATTTTCTTCATTTGTCTTGTTATATATAGATGGGGTACACCTATTCATGTTGATGCTGCTAGTGGTGGCTTTATTG CTCCTTTCATTTATCCAGAGCTGGAATGGGATTTCAGACTCCCATTGGTGAAGAGCATCAATGTCAGTGGCCACAAGTAT GGACTTGTTTATGCCGGAATTGGTTGGGTTATATGGAGAAGCAAGGAAGACTTGCCAGAAGAACTTGTCTTCCACATTAA TTACCTTGGAGCTGACCAACCTACATTCACCTTGAATTTTTCTAAAGGTGATTATTGAAACTTATATTTCTTGATCCTTG ATTACTTGCTTATACTATAGTTACCTTATCATAGAGCCTAAATTTTACTTTCCATGCTGCAGGTTCTAGTCAGATCATTG CTCAATATTATCAGCTAATTCGCCTAGGCAAAGAGGTGAGCTTATATTTAAATTAAGAATTAAGAAATCTGCTAAATTAG TTTGATTTACAATTTTTTTCTCCCTCATTATTTGATTCAATACCATAAATATTTTTAAGAAATAACATTCAATCAATCTT CAATACATAAAACCATATTTTACCATAAAATAAAAGCCACTATGCCAAATGAAAGTAGCTATGAATTCTGAGTTAAGGAA TCCAAATGAAACTCTATCATAACAAAATTTGCAAGAGGGTGCACAACCATTTTTTCTAGGAAACATTTGGTAATTCAGTA CTTCAACATGCATCTCACGTGATATCTCCTCATTTGACTCACTAGGGGTATAAGAGCATAATGGAGAACTGCAGAGAAAA TGCTATGGTGGTGAAGGAACGCTTGGAAAAGATTGGATGCTTTAACATACTCTCAAAAGACGATGGTGTTCCTGTGGTGG CATTTTCTTTGAAGGACAGAAGCCGCTATGATGAGTTCAAGATATCAAAGATGTTGCGCCGTCTCGGTTGGGTAGTGCCA GCTTATCCAATGCCACCGGGTGCTCAGCACATCAATGCACTCCGTGTGGTGGTCAGGGCTGATCTTTCACGCACACTTGC TGAATGCCTTGTGCTTGATATTGAAAATGTGGTGCATGAGCTTGAGAAACTTCACCCCAAGTACCCTGCCAAAACGACCA ACATTAAGGAAAAGAAGAGTGCATTTGATGCACGCAGGAAAATCATTGCTCCAGAATCAAATAAACTTCAGAAAATCATG GCTGCCTAGAGTGGGTTATCTAACTATATATGGCAACTAAGTTTTGTTCTAACTCCATGTAAAGTCCAGCCTTATCTAGA TTCACTTTATTCTTTAAATTTTTTATGTAAATCTCTTAACTCATTTCATTATTATGTTTCTAATAGATTTTTGGTGTATA TTATGATCTTTGATTGACAATATTGTAACTTAATTGTTTTTAAATGTTACTGTAATCTCATTCTTAAAGTTTGTTTATTA CTATGATGG
CDS sequence (LotjaGi4g1v0016800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACTTCACCTTGGCTTTTCCAAAACCAGGGTCTGATCTCTGTCTTCGCTCTAACTTTGCTTCTCGTTATGTCAGGGC TTCTCTTCCTAGGTTCAGCATGCCAGAGAACTCTATGCCAAAGAAGGCTGCATACCAGAACATACACGATGAGCTGAAGC TTGATGCGAATCCAAAGATGAACTTGGCTTCCTTTGTAACCACATCCATGGAGGAAGAATGTAACAAGCTCATGATGGAA TCCATCAACAAGAACTATGTAGACATGGATGAGTACCCTGCTACCACTGATCTTCATAATCGATGTGTAAACATGATAGC ACGTTTGTTCCATGCTGAAATTGGAGAAAATGAGAGTGCAATTGGAGCAGGAACTGTTGGATCATCTGAGGCCATAATGC TGGCAGGCCTTGCCTTCAAGAAGAGGTGGCAGAACAAGCGCAAGGCTGAGGGCAAGCCCTATGATAAGCCCAACATTGTC ACAGGTGCCAATGTGCAGGTATTAATTTCTTGTTCCCAACAATTGTTAAAAACTTCTTAG
Protein sequence (LotjaGi4g1v0016800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHFTLAFPKPGSDLCLRSNFASRYVRASLPRFSMPENSMPKKAAYQNIHDELKLDANPKMNLASFVTTSMEEECNKLMME SINKNYVDMDEYPATTDLHNRCVNMIARLFHAEIGENESAIGAGTVGSSEAIMLAGLAFKKRWQNKRKAEGKPYDKPNIV TGANVQVLISCSQQLLKTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 168 | 159 | 6.8E-97 | – | |
| PANTHER | 10 | 168 | 159 | 6.8E-97 | ||
| SUPERFAMILY | 18 | 167 | 150 | 4.11E-40 | ||
| Pfam | 35 | 169 | 135 | 2.0E-28 | ||
| Gene3D | 68 | 177 | 110 | 7.2E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glutamate decarboxylase activity | Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2. | ||
| Biological process | Glutamate metabolic process | The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid. | ||
| Molecular function | Carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi4g1v0016800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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