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LotjaGi4g1v0017100.1

Overview

Field Value
Gene ID LotjaGi4g1v0017100
Transcript ID LotjaGi4g1v0017100.1
Lotus japonicus genome version Gifu v1.2
Description Glutamate decarboxylase; TAIR: AT5G17330.1 glutamate decarboxylase; Swiss-Prot: sp|Q42521|DCE1_ARATH Glutamate decarboxylase 1; TrEMBL-Plants: tr|C6TF12|C6TF12_SOYBN Glutamate decarboxylase; Found in the gene: LotjaGi4g1v0017100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:2193865..2196927) extracted from Lotus japonicus Gifu genome v1.2.

CCAGCAAAAAGTTAAGGCCAAAACAAACATTTCATTACCTTACCAACCTTTTTCTCTTTGCATTTCTTGCTGTCCTCAAG AACAACAACATATATTATAATACACTTCACCATGGTTTTTCCAAAACCTTCTTCTGAATCTGATCTCTTTCTTCATTCTA ACTTTGCTTCTCGTTATGCCAGAGACTCTCTTCCTAGGTACATATTTATATACATAGTTACATGCATACATCATACATGG ATACATATACACAAATCACCACCCCCTTCTTAGCTTTTTCTTTCATATTATTTTCACCAATGCACACTTGGTTATGTTTG TGGGAAGTAGTGATGAATTTTGGTGATGCAGGTTCAGCATGCCAGAAAACTCTATGCCAAAGGAATCAGCATACCAGAAC ATACACGATGAGCTGCAGCTTGATGCTAATCCAAAGCTGAACCTGGCTTCCTTTGTAACCACATCCATGGAGGAAGAGTG CAACAAGCTCATAATGGAATCCATCAACAAGAACTATGTTGATATGGATGAGTACCCTATTACCACTGATCTCCATGTAC TTAATTTCTCTCTTAATCATCTTAAATTAATATATTATAGCATATAGTCATATACTACGTGATATTTTTGAATCTCTATA TTTTGGAATATGAAAATGATGTTTATTTTCTTGTGTTTTGTAATTTTGCCAACAGAATCGATGTGTGAACATGATTGCGC GTTTGTTCCATGCTGAAATTGGAGAAAATGAGAGCGCAATCGGAGCAGGAACCGTTGGATCATCCGAGGCCATAATGCTG GCAGGGCTTGCCTTCAAGAAGAGGTGGCAGAACAAGCGCAAAGCTGAGGGAAAGCCCTGTGATAAGCCAAACTTGGTCAC TGGTGCCAATGTTCAGGTATTGATCATTTCTAGTTTTCAATGACTCTGATTGTAGGTGATGCTCTCAAAATATGTGATTG TATCCTTGTAGGCCAATTTGCCAATGTTTCTTTTAGGTGATTGTAGGCCAATGTGCCAATGTTTTTTATTACTGATATGT GTTTTGCAAAATATGCATTATACAGGTTTGTTGGGAGAAGTTTGCAAGGTATTTTGAGGTGGAGTTGAGGGAAGTGAAGG TGAGAGAAGGGTACTACGTGATGGACCCTGCCAAGGCCGTTGAGATGGTGGATGAGAACACAATTTGTGTGGCTGCAATC TTAGGTTCAACTTACAATGGAGAATTTGAAGATGTCAAGCTCTTGAATGACCTGTTGCTAGAAAAGAACAAGCAAACTGG GTAAGTAATATCCTACTTTCCGTGTTGCACTGGTTTCAAACTGAGGACATATTGAGTGGGTGATATTCGATCTCCAAAGC AACAAATCACTAAGAAAAACCTACAAATTAGAATCCTATTAGACTTAAGTAAATGTTTATGCTCAGCTTAACTTTCCTTT ATACTGGTTTTCTTAATTACTTGTTGTCACATTATATATAGATGGGATACACCTATTCATGTTGATGCTGCTAGTGGTGG CTTTATTGCTCCTTTCCTTTATCCAGAGCTGGAATGGGATTTCAGACTGCCATTGGTGAAGAGCATCAATGTTAGTGGCC ACAAGTATGGACTTGTTTATGCTGGAATTGGATGGGTTTTATGGAGAAGCAAAGAAGACTTGCCAGAAGACCTTGTTTTC CACATCAATTACCTTGGAGCAGACCAACCTACATTCACCCTGAATTTTTCTAAAGGTGATAAACAATTTTTTCTTGAATC TTGATCCCTGATCACTTGCTTAGTTGCTTATACCTTCTAGTTACCTTATCTTAATTAAAGCCTGAAGTTGACTTTCCACT TGCAGGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAATTCGCCTTGGGCATGAGGTGAGCTTGTAGTTAAACTATA ATTCTTAGTTTGATTTAAATCCTTCTCCCCCAACTCTAGTACTTCCTTACATCAATATTTCATAATAAATAACAACCAAT CTTCAATATTTCTAAACACGTTACACTATGAGGGGAGGGTTTCTTATAAGGCTCCTCCTTCCCTTCCCTCCCCTCCAAAA CTCAACTCGCAAACACACTCTTAAACCAGGTCTCGAGTTCGAGTGTTGTGTATGGGAAAATCCAAGTGGAAGAGCTAGCT CCATAAGTATGTGGGTGTTCACAGCTCGAACAAGATTGACTCTCGTGGAAGAGAATACCAACAAATAAAACACATTATAC TATAAAATAGTCACTATACCAAATGGTTGTAACTATGCATCTTTTTCCTAGTTTGGTTGGGCAATACTCTAAGTGACACT CTGCCTTATCAAATTTTGCTAGAACCTGCACATCCATTTTTCTAAGAAATATTTGGCAATTAAACTTCAACTGCATCTCA AATTGTTATATCTTCTGATTTTCTCACCAGGGGTATAAGAGCATAATGGAGAACTGCAGAGAAAATGCTATGGTGCTGAA GGAACGTTTGGAGGAGACAGGATGCTTTAACATCCTCTCAAAGGACAATGGTGTTCCTGTGGTGGCATTTTCTCTGAAGG ACAGAAGCCACTATGATGAGTTCAAGATATCAGAGATGTTGCGCCGCCACGGTTGGGTAGTGCCCGCGTATCCAATGCCA CCGGGCGCACAGCACATCAATGTGCTCCGTGTGGTGGTCAGGGCCGAGTTTTCACGCACACTTGGTGAACGCCTTGTGCT TGACATTAAAAATGTGATGCATGAGCTTCAGAAACCTCACTACCCTGCCAAAATGACCAACATTAGGGAAGAAAATGCAT TGGTTGACAATGTGATTGGTGTGAAGAAGAGTGCATTAATGGATGCACAGAGGGAAATCATTGCTCAAGAATCCAACAAG CGCCAGAAAATCATGGCTGCCTAGGAGGGAGGCTGGGAGGGTTATTCACTTTGGGCATTGGCAAATGGCAACTAAATAAG GAACTCCCCCTTTACTGATTTGGTTTATTTTATTTTTCAAAATTTTATGTAACTCACTTAGCTTATTTCATTATTATTTT GTATTTAGAGATTTTGATGTCAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0017100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTTTTCCAAAACCTTCTTCTGAATCTGATCTCTTTCTTCATTCTAACTTTGCTTCTCGTTATGCCAGAGACTCTCT TCCTAGGTTCAGCATGCCAGAAAACTCTATGCCAAAGGAATCAGCATACCAGAACATACACGATGAGCTGCAGCTTGATG CTAATCCAAAGCTGAACCTGGCTTCCTTTGTAACCACATCCATGGAGGAAGAGTGCAACAAGCTCATAATGGAATCCATC AACAAGAACTATGTTGATATGGATGAGTACCCTATTACCACTGATCTCCATAATCGATGTGTGAACATGATTGCGCGTTT GTTCCATGCTGAAATTGGAGAAAATGAGAGCGCAATCGGAGCAGGAACCGTTGGATCATCCGAGGCCATAATGCTGGCAG GGCTTGCCTTCAAGAAGAGGTGGCAGAACAAGCGCAAAGCTGAGGGAAAGCCCTGTGATAAGCCAAACTTGGTCACTGGT GCCAATGTTCAGGTTTGTTGGGAGAAGTTTGCAAGGTATTTTGAGGTGGAGTTGAGGGAAGTGAAGGTGAGAGAAGGGTA CTACGTGATGGACCCTGCCAAGGCCGTTGAGATGGTGGATGAGAACACAATTTGTGTGGCTGCAATCTTAGGTTCAACTT ACAATGGAGAATTTGAAGATGTCAAGCTCTTGAATGACCTGTTGCTAGAAAAGAACAAGCAAACTGGATGGGATACACCT ATTCATGTTGATGCTGCTAGTGGTGGCTTTATTGCTCCTTTCCTTTATCCAGAGCTGGAATGGGATTTCAGACTGCCATT GGTGAAGAGCATCAATGTTAGTGGCCACAAGTATGGACTTGTTTATGCTGGAATTGGATGGGTTTTATGGAGAAGCAAAG AAGACTTGCCAGAAGACCTTGTTTTCCACATCAATTACCTTGGAGCAGACCAACCTACATTCACCCTGAATTTTTCTAAA GGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAATTCGCCTTGGGCATGAGGGGTATAAGAGCATAATGGAGAACTG CAGAGAAAATGCTATGGTGCTGAAGGAACGTTTGGAGGAGACAGGATGCTTTAACATCCTCTCAAAGGACAATGGTGTTC CTGTGGTGGCATTTTCTCTGAAGGACAGAAGCCACTATGATGAGTTCAAGATATCAGAGATGTTGCGCCGCCACGGTTGG GTAGTGCCCGCGTATCCAATGCCACCGGGCGCACAGCACATCAATGTGCTCCGTGTGGTGGTCAGGGCCGAGTTTTCACG CACACTTGGTGAACGCCTTGTGCTTGACATTAAAAATGTGATGCATGAGCTTCAGAAACCTCACTACCCTGCCAAAATGA CCAACATTAGGGAAGAAAATGCATTGGTTGACAATGTGATTGGTGTGAAGAAGAGTGCATTAATGGATGCACAGAGGGAA ATCATTGCTCAAGAATCCAACAAGCGCCAGAAAATCATGGCTGCCTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0017100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVFPKPSSESDLFLHSNFASRYARDSLPRFSMPENSMPKESAYQNIHDELQLDANPKLNLASFVTTSMEEECNKLIMESI NKNYVDMDEYPITTDLHNRCVNMIARLFHAEIGENESAIGAGTVGSSEAIMLAGLAFKKRWQNKRKAEGKPCDKPNLVTG ANVQVCWEKFARYFEVELREVKVREGYYVMDPAKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTP IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVLWRSKEDLPEDLVFHINYLGADQPTFTLNFSK GSSQIIAQYYQLIRLGHEGYKSIMENCRENAMVLKERLEETGCFNILSKDNGVPVVAFSLKDRSHYDEFKISEMLRRHGW VVPAYPMPPGAQHINVLRVVVRAEFSRTLGERLVLDIKNVMHELQKPHYPAKMTNIREENALVDNVIGVKKSALMDAQRE IIAQESNKRQKIMAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43321:SF2
1 494 494 0.0 –
PANTHER
PTHR43321
1 494 494 0.0
IPR010107
TIGRFAM
TIGR01788
16 444 429 1.0E-204
IPR010107
SUPERFAMILY
SSF53383
16 445 430 4.5E-131
IPR015424
Pfam
PF00282
33 381 349 5.4E-98
IPR002129
Gene3D
G3DSA:3.40.640.10
66 360 295 3.8E-88
IPR015421
Gene3D
G3DSA:3.90.1150.160
361 447 87 7.4E-33 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004351
Molecular function Glutamate decarboxylase activity Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2.
Subterm of
GO:0006536
Biological process Glutamate metabolic process The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0017100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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