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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0021000 |
| Transcript ID | LotjaGi4g1v0021000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G27610.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610; TrEMBL-Plants: tr|A0A072UNN0|A0A072UNN0_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi4g1v0021000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2594603..2598045) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTCTTAAAATATCATCATTTCAAGTATACTAATACTTTTTTTTAATTAAAATGTTTTTTAACACCATATCATATGAC ACCATTTTAAGGATAAGAGAGAAACAGAGACAGTCCAAAACAGTTGCAGCATGAGCATCATCATTCCACACTGCGTGCAC CAACCTTGTCATCGCTCTCATGCTCCCACAAACGAAGCAATCACGCTTCCTCACCATTCATTCCACTCTACGCCAATTCT CTCTGTGCCTTACACTCCAACGCTTTCAAAGAACCCTCTTCGAAGCAGATTGACCAAACCTCTAGCACTTGCAGCTCCTG AAACCCATGATGAACAACCCAACATTCGACCCTTAATTCACCTCTTAAAGACCTGTGAGGAAAAAAGGTATCTTAAAGAA GCAAAATCAATTCATGGGCATGTCTTAAAATCGGGTTTTGGAGGCAAGGACTTGTTGGTGTTTTTGAATAATGCAGTTCA TGTTTACTCCAAATGCTTGGACTACAATTCTGCACGTAAAGTGTTTGATGGAATGTCCCAGAGGAACGTGTTTACTTGGA CTGTTATGGTTGTCGCGTCCAATGAGCATGGTTACTACCACGATGGGGTGGAGCTTTTTAGCATGATGTTGGAGCAAGGT GTGTTGATTGATGGCTTTGTCCTCTCTGCTGTTTTGCAGTCTTGTGTTGGGTTGAATTCGATTGAGATGGGTGAGATGGT GCATGCCCAAGTTGTTGTTAGAGGTCTTCTGATGCATGCGGTTGTTGGGACATCTCTTCTTAACTTGTATGCAAAGATAG GAAAGAGTGAGAGTTCAGTTAAGGTGTTCAACAGCATGGCAGAGGTTAATGAAATCTCTTGGAATGCAATGATTTCAGGG TTTACCTCTAATGGCCTGCACCTACAAGCATTTGAGTGTTTTATCAACATGGTTGAAGGAGGGGTCATACCTACTAACTC CACCTTTCTTAGTGTTTCCAAGGCTGTTGGGCAGTTAGGTGACATTAACAAGTGTCATGAAGTTCATAGGTATGCTTCTG AATTGGGATTGGATTGCAATACTTCGGTTGGAACGGCTCTGATCGATATGTGCTCTAAGTGTGGGGCTCTGTCTGAGGCG CGAGTTATTTTCCACTCGAAGTTTGCGGGGTGTTTGGTTAACATACCTTGGAATGCAATGATAACAGGTTGTTCACATGC TGGTTCTCACCTAGAAGCTTTGGAGCTGTTCACAAGAATGTGCAACAATGATATCAAACCAGATGTGTACACATTCTGTT GCGTGTTCAACTCGATTGCTGCTTTGAAGTGTCTCAAATCCTTAAAGGAGACTCATGGGATGGCTTTGAAATGTGGATTT GATGCGATGAAAATTAGCGCATCGAATGCTCTTGCTGATGCATATGCAAAATGTGAGTCACTTGAAGCTGTAGAGAAGGT ATTTAATAGAATGGAAGCGAAAGATATAGTATCTTGGACAACCATGGTGACTGCATATTGTCAATATTCTGAGTGGGGAA AAGCCTTGGCCATCTTCTCACAAATGTGCAATGAAGGTTTTGCACCCAATCATTTTACTTTTTCTAGTGTGATTACTGCA TGTGGTGGTCTTTGCTCACTAGAACATGGCCAGCAAATTCATGGTTTGATATGCAAGGCCAGATTGGACACTGACTCATG CATAGAAAGTGCTCTGATTGACATGTACGCCAAATGCGGCAATCTGATGGAGGCAAAGAAGATTTTCGAAAGGATATCTA ACCCGGACGTTGTAACTTGGACTGCCATAATTTCCACTTATGCTCAACATGGTCTTGTTGAAGATGCTCTTGAGCTCTTT AGGAAGATGGAACAATCAGCTGCGAAGGTCAATGCCGTTACATTATTATGTGTCCTTTTTGCCTGTAGCCATGGAGGAAT GGTGGAGGATGGGATGAAAATTTTCCATCAAATGGAGGACACCTATGGTGTGGTACCGGAAATGGAGCATTACGCATGTG TTGTTGATCTCTTAGGTCGTGTCGGCCGCATGGATGAAGCAGTGGAGTTTATCTACAAGATGCCGATTGAGCCAAATGAA ATGGTTTGGCAGACATTGTTAGGAGCATGTAGGATTCATGGAAATGCCGAGTTGGGGAAGATTGCTGCTCAAAAGATTCT ATCAACTCGGCCTGAATATTCCTCTACTTATGTTCTTTTGTCCAACACTTACAAAGAATCAGGACGACATGAAGATGGTA TTAGTTTGAGAGATACCATGAAAGAACGAGGCATTAGAAAGGAACCAGGATATAGCTGGATTTCAGTTGGAGGTGAGGTT CATAAGTTTTATGCTGGAGATAAAAAACATGCCCAGAAAGATAAAATCTACTCTACTTTAGAAGAGTTGAAGAGGAATAT TAAGTACTTGAGCCATGAACCTGAATTCAGTTTTATACTATAACATAAGTGAACTTGTTGATCAAAATAGTCCTTAAACA AGAAGGAAAATAAACAAGGGGAGAGATGGGGCATCTTGGTTGGTTAATGTTTAACCATACAGCTCATCAAGGATTTTCAA CTTAGTGCATGTTTGGAAGCCCTTCTATAGTTGATTCTGAAGCCAGAATCAATTCCGTGGAGAAACTTCTATCAGTAGCT TATGGGTTTTAAAATTGATTCTTATGAAATAGAAGTTGATCCAAAGATGCTACTATTATAGTTATGCAATTACCATTTGC AATGTGCTGGAGCACTGAGATGGTTTTGCTTGAGAAATTTGGCCTACGGGCTACAACCAATCATCACGATATACAGTATT TCAAAAGAGAAATTTATATTGAAGATTGAAGAGTGCCATTCCTATTGGATGTACCATGAGTGCCATTAGTTCCAATTTAT AAAGAGATCTTATTTGAATCAGAAACGTGTTTATTTGCTTGTTATGATACAAGGTACTAAGATAGTGTCAACCTTTTTAT AGCCATATTGAAGCCATGGAGATTGGACGTGACAAGCAAGTGAAGGGCAATAGAGACGCTTCATCTTCATCTTGTTGGTT TGGCGGGTATGGCTTTGCAAATCCACACATTTCATAAAAATACATATACATATAGGATACTAATCTTGGTACATGACGTG AAACTTATCCTTTTGTGAAGTTTTAGCATATAAGGAGCATATTGTAAATAATATGTACTTAATGTTAGTTGTGAAATCAT GGTTCATAAGTGAATCAGTTTTTAACATGGTCCACCATAGAATTGCCCCTATAAAATATATATATTCTATAACAGCAGTT GCAAATGGTTGTACACTTTCATTTTAGGCAAACTTTTGCAAAACAAATAGTTGTTAGAAGCTCAAAATGGTTGTACTATG ATTTCGTCCATTTTGTTTCATTACATTTTCTTAGGGTCTAATTTTTTGCCTATTTAGTTCATAGAATATGCTTGATCCAC TTG
CDS sequence (LotjaGi4g1v0021000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCATCATCATTCCACACTGCGTGCACCAACCTTGTCATCGCTCTCATGCTCCCACAAACGAAGCAATCACGCTTCC TCACCATTCATTCCACTCTACGCCAATTCTCTCTGTGCCTTACACTCCAACGCTTTCAAAGAACCCTCTTCGAAGCAGAT TGACCAAACCTCTAGCACTTGCAGCTCCTGAAACCCATGATGAACAACCCAACATTCGACCCTTAATTCACCTCTTAAAG ACCTGTGAGGAAAAAAGGTATCTTAAAGAAGCAAAATCAATTCATGGGCATGTCTTAAAATCGGGTTTTGGAGGCAAGGA CTTGTTGGTGTTTTTGAATAATGCAGTTCATGTTTACTCCAAATGCTTGGACTACAATTCTGCACGTAAAGTGTTTGATG GAATGTCCCAGAGGAACGTGTTTACTTGGACTGTTATGGTTGTCGCGTCCAATGAGCATGGTTACTACCACGATGGGGTG GAGCTTTTTAGCATGATGTTGGAGCAAGGTGTGTTGATTGATGGCTTTGTCCTCTCTGCTGTTTTGCAGTCTTGTGTTGG GTTGAATTCGATTGAGATGGGTGAGATGGTGCATGCCCAAGTTGTTGTTAGAGGTCTTCTGATGCATGCGGTTGTTGGGA CATCTCTTCTTAACTTGTATGCAAAGATAGGAAAGAGTGAGAGTTCAGTTAAGGTGTTCAACAGCATGGCAGAGGTTAAT GAAATCTCTTGGAATGCAATGATTTCAGGGTTTACCTCTAATGGCCTGCACCTACAAGCATTTGAGTGTTTTATCAACAT GGTTGAAGGAGGGGTCATACCTACTAACTCCACCTTTCTTAGTGTTTCCAAGGCTGTTGGGCAGTTAGGTGACATTAACA AGTGTCATGAAGTTCATAGGTATGCTTCTGAATTGGGATTGGATTGCAATACTTCGGTTGGAACGGCTCTGATCGATATG TGCTCTAAGTGTGGGGCTCTGTCTGAGGCGCGAGTTATTTTCCACTCGAAGTTTGCGGGGTGTTTGGTTAACATACCTTG GAATGCAATGATAACAGGTTGTTCACATGCTGGTTCTCACCTAGAAGCTTTGGAGCTGTTCACAAGAATGTGCAACAATG ATATCAAACCAGATGTGTACACATTCTGTTGCGTGTTCAACTCGATTGCTGCTTTGAAGTGTCTCAAATCCTTAAAGGAG ACTCATGGGATGGCTTTGAAATGTGGATTTGATGCGATGAAAATTAGCGCATCGAATGCTCTTGCTGATGCATATGCAAA ATGTGAGTCACTTGAAGCTGTAGAGAAGGTATTTAATAGAATGGAAGCGAAAGATATAGTATCTTGGACAACCATGGTGA CTGCATATTGTCAATATTCTGAGTGGGGAAAAGCCTTGGCCATCTTCTCACAAATGTGCAATGAAGGTTTTGCACCCAAT CATTTTACTTTTTCTAGTGTGATTACTGCATGTGGTGGTCTTTGCTCACTAGAACATGGCCAGCAAATTCATGGTTTGAT ATGCAAGGCCAGATTGGACACTGACTCATGCATAGAAAGTGCTCTGATTGACATGTACGCCAAATGCGGCAATCTGATGG AGGCAAAGAAGATTTTCGAAAGGATATCTAACCCGGACGTTGTAACTTGGACTGCCATAATTTCCACTTATGCTCAACAT GGTCTTGTTGAAGATGCTCTTGAGCTCTTTAGGAAGATGGAACAATCAGCTGCGAAGGTCAATGCCGTTACATTATTATG TGTCCTTTTTGCCTGTAGCCATGGAGGAATGGTGGAGGATGGGATGAAAATTTTCCATCAAATGGAGGACACCTATGGTG TGGTACCGGAAATGGAGCATTACGCATGTGTTGTTGATCTCTTAGGTCGTGTCGGCCGCATGGATGAAGCAGTGGAGTTT ATCTACAAGATGCCGATTGAGCCAAATGAAATGGTTTGGCAGACATTGTTAGGAGCATGTAGGATTCATGGAAATGCCGA GTTGGGGAAGATTGCTGCTCAAAAGATTCTATCAACTCGGCCTGAATATTCCTCTACTTATGTTCTTTTGTCCAACACTT ACAAAGAATCAGGACGACATGAAGATGGTATTAGTTTGAGAGATACCATGAAAGAACGAGGCATTAGAAAGGAACCAGGA TATAGCTGGATTTCAGTTGGAGGTGAGGTTCATAAGTTTTATGCTGGAGATAAAAAACATGCCCAGAAAGATAAAATCTA CTCTACTTTAGAAGAGTTGAAGAGGAATATTAAGTACTTGAGCCATGAACCTGAATTCAGTTTTATACTATAA
Protein sequence (LotjaGi4g1v0021000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIIIPHCVHQPCHRSHAPTNEAITLPHHSFHSTPILSVPYTPTLSKNPLRSRLTKPLALAAPETHDEQPNIRPLIHLLK TCEEKRYLKEAKSIHGHVLKSGFGGKDLLVFLNNAVHVYSKCLDYNSARKVFDGMSQRNVFTWTVMVVASNEHGYYHDGV ELFSMMLEQGVLIDGFVLSAVLQSCVGLNSIEMGEMVHAQVVVRGLLMHAVVGTSLLNLYAKIGKSESSVKVFNSMAEVN EISWNAMISGFTSNGLHLQAFECFINMVEGGVIPTNSTFLSVSKAVGQLGDINKCHEVHRYASELGLDCNTSVGTALIDM CSKCGALSEARVIFHSKFAGCLVNIPWNAMITGCSHAGSHLEALELFTRMCNNDIKPDVYTFCCVFNSIAALKCLKSLKE THGMALKCGFDAMKISASNALADAYAKCESLEAVEKVFNRMEAKDIVSWTTMVTAYCQYSEWGKALAIFSQMCNEGFAPN HFTFSSVITACGGLCSLEHGQQIHGLICKARLDTDSCIESALIDMYAKCGNLMEAKKIFERISNPDVVTWTAIISTYAQH GLVEDALELFRKMEQSAAKVNAVTLLCVLFACSHGGMVEDGMKIFHQMEDTYGVVPEMEHYACVVDLLGRVGRMDEAVEF IYKMPIEPNEMVWQTLLGACRIHGNAELGKIAAQKILSTRPEYSSTYVLLSNTYKESGRHEDGISLRDTMKERGIRKEPG YSWISVGGEVHKFYAGDKKHAQKDKIYSTLEELKRNIKYLSHEPEFSFIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 59 | 193 | 135 | 9.7E-13 | ||
| ProSiteProfiles | 71 | 105 | 35 | 5.141 | ||
| PANTHER | 75 | 194 | 120 | 2.7E-126 | – | |
| ProSiteProfiles | 108 | 138 | 31 | 5.316 | ||
| ProSiteProfiles | 139 | 173 | 35 | 8.999 | ||
| Pfam | 141 | 171 | 31 | 0.044 | ||
| ProSiteProfiles | 174 | 208 | 35 | 5.525 | ||
| PANTHER | 178 | 295 | 118 | 2.7E-126 | – | |
| Gene3D | 194 | 298 | 105 | 8.3E-13 | ||
| ProSiteProfiles | 209 | 239 | 31 | 6.358 | ||
| Pfam | 214 | 238 | 25 | 0.12 | ||
| Pfam | 240 | 284 | 45 | 1.2E-7 | ||
| ProSiteProfiles | 240 | 274 | 35 | 10.665 | ||
| TIGRFAM | 242 | 275 | 34 | 3.1E-4 | ||
| ProSiteProfiles | 275 | 309 | 35 | 5.678 | ||
| PANTHER | 296 | 394 | 99 | 2.7E-126 | – | |
| Gene3D | 299 | 370 | 72 | 3.6E-5 | ||
| ProSiteProfiles | 310 | 340 | 31 | 5.316 | ||
| ProSiteProfiles | 343 | 377 | 35 | 10.063 | ||
| Pfam | 347 | 388 | 42 | 6.4E-10 | ||
| TIGRFAM | 347 | 379 | 33 | 1.5E-7 | ||
| PANTHER | 397 | 492 | 96 | 2.7E-126 | – | |
| Gene3D | 410 | 543 | 134 | 3.8E-27 | ||
| ProSiteProfiles | 414 | 444 | 31 | 7.191 | ||
| SUPERFAMILY | 417 | 694 | 278 | 1.49E-7 | ||
| Pfam | 444 | 491 | 48 | 2.0E-11 | ||
| ProSiteProfiles | 445 | 479 | 35 | 11.937 | ||
| TIGRFAM | 447 | 480 | 34 | 5.7E-8 | ||
| ProSiteProfiles | 480 | 514 | 35 | 5.393 | ||
| PANTHER | 495 | 710 | 216 | 2.7E-126 | – | |
| ProSiteProfiles | 515 | 545 | 31 | 7.235 | ||
| Pfam | 520 | 542 | 23 | 0.007 | ||
| Gene3D | 544 | 756 | 213 | 4.5E-33 | ||
| Pfam | 545 | 592 | 48 | 1.8E-9 | ||
| ProSiteProfiles | 546 | 580 | 35 | 11.718 | ||
| TIGRFAM | 548 | 575 | 28 | 2.5E-6 | ||
| ProSiteProfiles | 581 | 611 | 31 | 7.487 | ||
| ProSiteProfiles | 617 | 651 | 35 | 6.84 | ||
| Pfam | 621 | 644 | 24 | 0.34 | ||
| ProSiteProfiles | 683 | 717 | 35 | 8.309 | ||
| Pfam | 686 | 715 | 30 | 1.4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0021000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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