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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0021700 |
| Transcript ID | LotjaGi4g1v0021700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G41080.1 pentatricopeptide (PPR) repeat protein; Swiss-Prot: sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080; TrEMBL-Plants: tr|K7L5L1|K7L5L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0021700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:2649596..2651834) extracted from Lotus japonicus Gifu genome v1.2.
TATTTTTCTTAAAACATCACTTTAAACATCCAATTGCACTGAGTGGTGACTTGTTCATGTTTCATGCATGGGCAGGTTTG ATCTTCCTCGTACCACCTTCTCTAGTGTTTCTCTGCCTTCCATTTTTCAAAACTCACTACCTCGTTTCTCCACGATTTCC AATGCCAAAGAACAATTTAACACCCTGTGTTCCAAAGGGCACATAAAAGAAGCGTTTGATTGCTTTGCATCTGAGATATG GGCAGAACCTAGTTTGTTCTCAAATCTCCTCCAAGCATGCATTCCCACAAAGTCTGTTTCTCTGGCAAAACAGCTTCATT CTTTGATATTAACTTCTGGGTGTTTCAAAGACAAGTTCATCTCCAATCATCTCCTCAACCTCTACTCAAAACTTGGGGAA ATCCAACATGCAGTGACACTGTTCGATCGAATGCCGAGGAGGAACTTCATGTCATGCAACATCATGATCAAGGCATATCT TGAAATGGGCAACCTTGAGAGTGCCAAGAAACTGTTTGACGAAATGCCTGACAGGAATGTTGCTACGTGGAATGCGATGG TCACGGGGTTGATCAAGTTTGAAATGAATGAAGAGTCTGTGTTATTATTTTCGAGGATGAATGAGTTGGGTTTCATGCCG GATGAGTACTCGTTGGGTAGTGTGCTCAGGGGTTGTGCACATTTGAGAGCTTTAATAGCAGGGGAACAAGTTCATGCATA TGTTATTAAATGTGGTTTTGAGCTTAATATGGTTGTCGGGTGTTCTTTAGCTCATATGTATATGAAAGCTGGTAGCTTGC GTGATGGGGAGAGAATTATCAAATGGATGCCGAGCTGTAATTTGGTTGCTTGGAATACACTTATGGCCGGAAAAGCTCAA AATGGGTACTCTGAAGGAGTTATGGATCAATACTACATGATGAGAATGGCTGGTTTTAGACCAGATAGGATTACTTTCGT GAGTGTGATTAGTTCATGTTCGGAGTTAGCCATCCTCGGTCAAGGGAAGCAGATTCACGCTGAAGCAATTAAAGCAGGAG CATGTTCTATAGTTTCTGTAGTTAGTTCATTGGTTAGTATGTACTCTAGGTGTGGATGTTTGCAAGATTCCATCAAAGCT TTTATGGAATGCGAAGAGCGAGATGTTGTATTATGGAGCTCAATGATCGCTGCATATGGATTTCACGGTCAAGGAGATCA AGCTATCAAGCTTTTCCATGAGATGGAACGGGAAAGCTTGCCGGGAAATGAAGTTACATTCTTGAGCTTGCTATATGCTT GTAGCCATTCTGGACTAAAGGAGAAAGGGCTTGATTTCTTTGACATGATGGTAGAAAAGTATGGACTTAAGGCTAGACTA GAACATTATACTTGTGTAGTTGACTTATTAGGCAGATCTGGTTGTTTGGAAGAGGCAGAGGCAATGATACGATCCATGCC GGTAAGAGCGGATGCAATAATATGGAAAACATTATTATCTGCATGTAAAATCCACAAGAATGCAGAAATGGCAAGAAGGG TTGCTGAGGAAGTTCTTAGGATCGATCCTCAAGACTCAGCTTCGTATGTTCTGCTTGCCAGTGTTCACGCATCAGCTAAG AGGTGGCAGAATGTTTCTGAGGTGAGGAGAGCCATGAAAGAAAGGATGGTGAAGAAAGAACCAGGCATAAGCTGGGTAGA AGTGAAGAATCAGGTTCATCAGTTCCGTATGGGCGATGAATGCCACCCGAAGTATGCGGAGATTAATCTGTATTTGGAAG AATTAACTTCAGAAATGAAGATGAGGGGATATGTACCTGATACTAGTTCTGTTTTGCATGACATGGACAATGAGGAAAAA GAATACAACTTGACACACCACAGTGAGAAATTAGCAATTGCTTTTGCTTTAATGAGCACACCAGAGGGAGTGCCAATAAG GGTGATGAAAAATTTGAGGGTTTGTGGTGACTGTCATGTTGCCATCAAGTACATATCAGAGATAAAAAAATCAGAAATTA TTGTAAGAGACTCGAGCAGGTTTCACCATTTTAAAAACGGTGCATGTTCTTGTGGAGATTATTGGTAGTAGTTATTCTTT GATCTCCATTTTTTATGTTGTTCATGATCTTGCAAACAATGCAAAGCTTACAGGTAAGAGGGACTAGATTAGTTACTCTT CTCATTAACCACCACAACCTTTCTTCAATAGTAGATAAGGTTATATCATGTCATAATTATTAATTTCCAAATTCATAAG
CDS sequence (LotjaGi4g1v0021700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAGGTTTGATCTTCCTCGTACCACCTTCTCTAGTGTTTCTCTGCCTTCCATTTTTCAAAACTCACTACCTCGTTT CTCCACGATTTCCAATGCCAAAGAACAATTTAACACCCTGTGTTCCAAAGGGCACATAAAAGAAGCGTTTGATTGCTTTG CATCTGAGATATGGGCAGAACCTAGTTTGTTCTCAAATCTCCTCCAAGCATGCATTCCCACAAAGTCTGTTTCTCTGGCA AAACAGCTTCATTCTTTGATATTAACTTCTGGGTGTTTCAAAGACAAGTTCATCTCCAATCATCTCCTCAACCTCTACTC AAAACTTGGGGAAATCCAACATGCAGTGACACTGTTCGATCGAATGCCGAGGAGGAACTTCATGTCATGCAACATCATGA TCAAGGCATATCTTGAAATGGGCAACCTTGAGAGTGCCAAGAAACTGTTTGACGAAATGCCTGACAGGAATGTTGCTACG TGGAATGCGATGGTCACGGGGTTGATCAAGTTTGAAATGAATGAAGAGTCTGTGTTATTATTTTCGAGGATGAATGAGTT GGGTTTCATGCCGGATGAGTACTCGTTGGGTAGTGTGCTCAGGGGTTGTGCACATTTGAGAGCTTTAATAGCAGGGGAAC AAGTTCATGCATATGTTATTAAATGTGGTTTTGAGCTTAATATGGTTGTCGGGTGTTCTTTAGCTCATATGTATATGAAA GCTGGTAGCTTGCGTGATGGGGAGAGAATTATCAAATGGATGCCGAGCTGTAATTTGGTTGCTTGGAATACACTTATGGC CGGAAAAGCTCAAAATGGGTACTCTGAAGGAGTTATGGATCAATACTACATGATGAGAATGGCTGGTTTTAGACCAGATA GGATTACTTTCGTGAGTGTGATTAGTTCATGTTCGGAGTTAGCCATCCTCGGTCAAGGGAAGCAGATTCACGCTGAAGCA ATTAAAGCAGGAGCATGTTCTATAGTTTCTGTAGTTAGTTCATTGGTTAGTATGTACTCTAGGTGTGGATGTTTGCAAGA TTCCATCAAAGCTTTTATGGAATGCGAAGAGCGAGATGTTGTATTATGGAGCTCAATGATCGCTGCATATGGATTTCACG GTCAAGGAGATCAAGCTATCAAGCTTTTCCATGAGATGGAACGGGAAAGCTTGCCGGGAAATGAAGTTACATTCTTGAGC TTGCTATATGCTTGTAGCCATTCTGGACTAAAGGAGAAAGGGCTTGATTTCTTTGACATGATGGTAGAAAAGTATGGACT TAAGGCTAGACTAGAACATTATACTTGTGTAGTTGACTTATTAGGCAGATCTGGTTGTTTGGAAGAGGCAGAGGCAATGA TACGATCCATGCCGGTAAGAGCGGATGCAATAATATGGAAAACATTATTATCTGCATGTAAAATCCACAAGAATGCAGAA ATGGCAAGAAGGGTTGCTGAGGAAGTTCTTAGGATCGATCCTCAAGACTCAGCTTCGTATGTTCTGCTTGCCAGTGTTCA CGCATCAGCTAAGAGGTGGCAGAATGTTTCTGAGGTGAGGAGAGCCATGAAAGAAAGGATGGTGAAGAAAGAACCAGGCA TAAGCTGGGTAGAAGTGAAGAATCAGGTTCATCAGTTCCGTATGGGCGATGAATGCCACCCGAAGTATGCGGAGATTAAT CTGTATTTGGAAGAATTAACTTCAGAAATGAAGATGAGGGGATATGTACCTGATACTAGTTCTGTTTTGCATGACATGGA CAATGAGGAAAAAGAATACAACTTGACACACCACAGTGAGAAATTAGCAATTGCTTTTGCTTTAATGAGCACACCAGAGG GAGTGCCAATAAGGGTGATGAAAAATTTGAGGGTTTGTGGTGACTGTCATGTTGCCATCAAGTACATATCAGAGATAAAA AAATCAGAAATTATTGTAAGAGACTCGAGCAGGTTTCACCATTTTAAAAACGGTGCATGTTCTTGTGGAGATTATTGGTA G
Protein sequence (LotjaGi4g1v0021700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRFDLPRTTFSSVSLPSIFQNSLPRFSTISNAKEQFNTLCSKGHIKEAFDCFASEIWAEPSLFSNLLQACIPTKSVSLA KQLHSLILTSGCFKDKFISNHLLNLYSKLGEIQHAVTLFDRMPRRNFMSCNIMIKAYLEMGNLESAKKLFDEMPDRNVAT WNAMVTGLIKFEMNEESVLLFSRMNELGFMPDEYSLGSVLRGCAHLRALIAGEQVHAYVIKCGFELNMVVGCSLAHMYMK AGSLRDGERIIKWMPSCNLVAWNTLMAGKAQNGYSEGVMDQYYMMRMAGFRPDRITFVSVISSCSELAILGQGKQIHAEA IKAGACSIVSVVSSLVSMYSRCGCLQDSIKAFMECEERDVVLWSSMIAAYGFHGQGDQAIKLFHEMERESLPGNEVTFLS LLYACSHSGLKEKGLDFFDMMVEKYGLKARLEHYTCVVDLLGRSGCLEEAEAMIRSMPVRADAIIWKTLLSACKIHKNAE MARRVAEEVLRIDPQDSASYVLLASVHASAKRWQNVSEVRRAMKERMVKKEPGISWVEVKNQVHQFRMGDECHPKYAEIN LYLEELTSEMKMRGYVPDTSSVLHDMDNEEKEYNLTHHSEKLAIAFALMSTPEGVPIRVMKNLRVCGDCHVAIKYISEIK KSEIIVRDSSRFHHFKNGACSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 127 | 122 | 1.3E-8 | ||
| PANTHER | 37 | 155 | 119 | 3.1E-90 | – | |
| ProSiteProfiles | 60 | 94 | 35 | 5.821 | ||
| ProSiteProfiles | 95 | 125 | 31 | 8.232 | ||
| Pfam | 100 | 127 | 28 | 9.0E-4 | ||
| TIGRFAM | 100 | 127 | 28 | 0.0024 | ||
| SUPERFAMILY | 106 | 513 | 408 | 1.18E-5 | ||
| ProSiteProfiles | 126 | 160 | 35 | 10.797 | ||
| Gene3D | 128 | 210 | 83 | 8.6E-17 | ||
| TIGRFAM | 129 | 158 | 30 | 1.0E-6 | ||
| Pfam | 157 | 204 | 48 | 7.1E-8 | ||
| ProSiteProfiles | 161 | 191 | 31 | 6.993 | ||
| ProSiteProfiles | 192 | 226 | 35 | 6.478 | ||
| Gene3D | 211 | 311 | 101 | 7.7E-14 | ||
| PANTHER | 211 | 316 | 106 | 3.1E-90 | – | |
| ProSiteProfiles | 227 | 257 | 31 | 5.678 | ||
| ProSiteProfiles | 258 | 292 | 35 | 9.065 | ||
| Pfam | 260 | 290 | 31 | 0.055 | ||
| ProSiteProfiles | 293 | 327 | 35 | 6.237 | ||
| Gene3D | 312 | 565 | 254 | 3.9E-37 | ||
| PANTHER | 312 | 532 | 221 | 3.1E-90 | – | |
| ProSiteProfiles | 328 | 358 | 31 | 5.59 | ||
| ProSiteProfiles | 359 | 393 | 35 | 10.38 | ||
| Pfam | 359 | 406 | 48 | 5.1E-10 | ||
| TIGRFAM | 361 | 392 | 32 | 5.9E-4 | ||
| ProSiteProfiles | 394 | 424 | 31 | 8.298 | ||
| ProSiteProfiles | 430 | 460 | 31 | 6.862 | ||
| Pfam | 433 | 458 | 26 | 0.016 | ||
| ProSiteProfiles | 462 | 492 | 31 | 5.974 | ||
| ProSiteProfiles | 496 | 530 | 35 | 6.741 | ||
| Pfam | 532 | 656 | 125 | 4.5E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0021700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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