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LotjaGi4g1v0022500.3

Overview

Field Value
Gene ID LotjaGi4g1v0022500
Transcript ID LotjaGi4g1v0022500.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent zinc metalloprotease FtsH; TAIR: AT2G34560.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q3B8D5|KATL2_XENLA Katanin p60 ATPase-containing subunit A-like 2; TrEMBL-Plants: tr|I3SHP0|I3SHP0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0022500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:2793084..2799049) extracted from Lotus japonicus Gifu genome v1.2.

CGAGAATTTACGTTGTTCGTTCTCAATTTTGATCTCCAGGACTTCAAATTGTACTATGATTCGAAGTTTGGGAGGAAGAA GGTTGTGCAGAATGGTGAGAATGCTGATAAAGCTGTTGGTAATGGAAGTTCGATGAGCGTAGTATCGAATGGTAATGTGC ATTCCAAAAGGTCATCGGATATGGCAATTTACGAGCAGCTTCGGAGCCAGGTAGTACTACCGTGTGTCATACATCATCAA CTGTCACTGATGATATTACTTCAAATTTCACTGATATGTGATTTATCATGCTTCAATTTTCTGTGTTTCAGGGGCAGAAT GGGATCCACACAAATGATGTTTCACCAAACAATATGGATGAGAGGCCGTAAGTATCTTCGATCCACTACTTTGTATTCTT GGGGCTTGTAGTTAGTGGATACTTCTGTTCTGCTGTGAGAATTAATCAAATCAAATCAAAGGAACAGTATTAGCATACTT GAGTTGTGAATCAGGTTTATGATTGGATATTCAATAGCTAGTTGACCAACTATTAAAAAGCCGTTGTTTTGTTAATTAAT TAGCCCTTGGAAGTTTGTTAATTTGGTAATGGACTGGTAGTGGTGTACTATTTTTTTGTATCGCTCTGTTCTCTGTAGTA TATTTCCAAAGCCATGTAACTGTTCATGCTAACAATGCAAATAAATATTGCTCAAGATAATACTATATTCTCTGTTCTCT GCACTATGATCGTTCACCAAAGTGATAATGTGTGCATGAACCCAAAACATATAGTTGTGTATATTCGAACAGCCACTACT GAAACTGGTACTTTGATATTAACTCGTTATTGTAACCGTTAGTAGTATCATTTCATGAGTTCTCTGACTCTAAAGGGAAG AAACAGATAAATGTCATACATATGTGCATCTTTAAGCAGCCACAACTGATATTGTTCCTTTGATCTTTGCTCATAATTGT AACCATCGATAGCAGCATCTTATGATTTCTGTGACTCTAAGGGACTATTTGGAAGACAGATTAATTCTTCATTCTCTAAA CAACTGATAATTATCCTTAACATTTTCAGGCAGAAGTCTTTGCTTCCACCTTTTGAATCTGCAGAAATGCGTACTTTAGC AGAGAGCTTAAGTAGGTAAATGTTCTCCTCTCGGTCTTTGACACCCCCTTGAGACAGCTGTTGGATACGTGGACGTTCTG TTTTTATCAAGTTTTTTCACTTGTGATTCTATATTGTAAGTTCTACTTTCATGCATGTTCATCATTGCACATCATATCAT GGGCAGGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGAAAGCATAAAGGGGCTGGAGAATGCAAAACGCTTACTTA AAGAAGCTGTTGTAATGCCAATTAAATATCCCAAGTAAGTATTAATTGAAAACTAACTACGCGCAATCTTCCTTAGGGCT ATGGGAATTCACTTTGTTTCACTACTTGTCAAGATATTCTTGTATATGCTACAAATGAGACCTTTTTGTTTGATGCAGTG GTTCATCTACGCTGATAAATAAATAGACTCCCCTTTCTTTTAATGTATTCAGATGAAAGAAGTGATATTACAAACATTGA GAAATCAGATTGACTTTTTCTCATTTTAATTTAACTGTGATGGCTTTCATACTGCTTTAATTTTGTAAGCAGTGTCTTAT GTGTTTTATTCTACTACATGAACCAATATTTTACACGAACTTGCCAAGAAATAAATTTCATTATATATTTCATGATGTTA TATGGTCTGGAACTAGATTCGATATACAAACAGATGGAAGTTCCTGTATTTTGGGTCACTTATATGTCTATCCTCCTTTA CTATCTCTAGTGAATAAATCATACATATTTTAATTTGTCAAGCTCAAGCATTTATATGGCTTTTTGCAGCATCAAAATAT TGGTTTGAATGAGTCCTTAGACAATAGTATAATGGCCTCTCTATTGCAACTTTACCTCAGATTGAACCTATAGTAGGTTG CACTTGCAGCATGCAAGCAAGGGTTTTTGGAATTTTTCTATCTTAGTGGGGTCTGGTACCTCTACTGAGTAAAATACCCG AGTCATGATCAGATGCTTCTCCCTTCACACCTTTTCGGGGATAGAGTAGTTTTCTCATCTTCTTAACTTATGGGTTTTAG TCTTTTATCTCATGGTTTCTTCAACTGTGCGATTTACAAATGGATTGTACAGCTCTTATGAGCAAATGCATTTGTATTCA GACTCATGTTATCAATGCTGCTTGTCTGAAGATAGGAAAGCAACTTATGGCCTCAAAATTTGGTGTTTCACAATTTTAAC CACAAGCATCACCGGTTTCAGAAAAAAAAATTTGTGAGCTGGATTTCAAGCATATAGTAATGCTAAAAATAGTTTTGCAA GATTTAAGATATTGTCCTTAGACGGACAATTGACTGATTCCTACGCTACACTTGCATATCTGCAGATAAAAAATTTGCCT CAGATACAAAGTGGAATCTTTTCTCATGGTCAAGCTGATCTTTCTCATTTGTGTAGGTACTTTACTGGTTTGTTATCACC ATGGAAGGGAATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGGTTTGTATTAATATTCCCTCAGAAAATTTTATATTGT TGTCTCCTCAGTGTCATTGTAAAAATTGTAACAGAATGTTATTTTTGTGCATGAATAAAATTACATGTTTTTAAATAAAT TCTGTTGCAGATAATAATATATAGCTTTTCTATTTTTATATTTTGATGATTGTGAATGTAAGTTTTTATATTTCGAATAA TGCATAACTGTACTGTTCATTCAAATGTTGCAGACAATGCTTGCAAAGGCAGTTGCAACAGAGTGCAAGACTACATTTTT TAATATTTCAGCATCATCTGTTGTCAGCAAATGGCGAGGCAAGTTACTAACAACATTTCCCCCTCTTTTAGAGTATTTAT GTTATGCAAATCTTAATCTAGGTATGAAACTCGAAAGTGTTCACTTTTTGGAGAAAGTGACTTAAACCTCTTGCTGATGC ATCAGTATGAGATAACGGTAGTATAAATTTATTTTTGAGAGTAAATAAAATAATATTTTTCAGCTGTTGATGATAGCACT AAATGTCATTTGCTTAATACCCTCATCCTCTGTTTTACTTAGCGCAATAGATACAGACAGGCGCACACACAATGTATCAT ATTAAAACACTGGTCTTGAAAAGAGCTGCTCACACAACTTTGAATAGCATTGATGGTTTTGAAAAGAGCTGCTTTCACAA CTCTTTAGGCACTGTTTAACCTGGACCACTTGTTCCTCTTCTCTACATCTCATTGTGTACAGATGATTTGTCAGAAAAGA GTCTGTGTTTATAGATGACACTACTTTAACATTTAATAATAGCCTTAAAAAATTAATCTCTTTGAATAATATCATGGTTT TTTAATGACATTATATTTGGCGCATACAAGATGTTGAGAGCTAATTCAATACTAATTTTTTCTGAAATTACAATGCAAAA AGATAAAATGTTGTAATATTATTTTTATGTCATTAGAATTTTATTTTGAATTTTGTAGATTATGGTGCAGCTACTTATAT AAAACTCTGACATTAATTTTTTTACGAAGAGACTTTGAATTAGAACTTAATTAAGTTGTCCATTTTATATTTCCAACATC ATGTTCACATGAAAAAGAAAAAAATTCATGGAAGTGAAATCATTCGTGTTCTCACTGCAAAATATGTCCACTGTCTAAAT CCCTGTATTTCCCCAAAACCATTAAATCATTAATCTGTTTTGTAAAGATGTGTTTTCTTGGCTACTTCATTTTAGTTGCT CGCTTGTCTGCCACCATTTCTTTTTCTTGATAAAAGAGAACTTTAAAGTGCTCCTCATTCTTCTATCTATTTATTGTGGT TTGCCAACATTTCCATTTACAAAACTTATTTTAGATTTCAGGCGATTCAGAGAAATTAGTGAAGGTGTTATTTCAGCTTG CCAGGCATCATGCACCCTCAACAATATTTCTTGATGAAATTGATGCAATCATTAGTCAACGTGGTGAAGCACGCAGTGAA CATGAAGCAAGTAGACGATTGAAAACTGAGCTACTCATTCAGGTGATGCTTGTTTCCTATGTCGAAGCATCCTTTCATAG TCATTGAGTTACTAATTAGATGGTAGTAATCTCAAAATCATGCATTTCTTGTAGCTTCCTTGCAGGATGTAGGATGGTCC TTAAACCTCTCTCACGTACTTTGAACAGCAAACAACTATTTTGGATAGGTTTTTTAAGAAAAATATCCAAATAGATTGAA AAAAAATTGCTTTGGAACCTAGCTTTCATTCTTTGTTCTATTAGCTGAGATATAAGCTTCCCTTGGTGGTTGGCATTTGA AACTGAAAGATCATTCTTTTAATTCGGGAGCTTTGTACCCTCTGAAAATTCAGTCTCAGTTCATCTTAATAAGTTAATAT GAATTTATTTACAATGGAACGGCATATGTTTTCTGCTGTGCTTTGTTGGACATTAATCATTTCGATTAGATTGCAGATGG ACGGCTTAACACGGACAGATGAACTTGTTTTTGTTTTGGCTGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTT CGACGTCTTGAGAAGCGAGTATCCTTCAAATATAAGCTTATGCTTAGTGTTAATGATAATTGAATAGGTCAAATTGTTCT AGTCCTCAAATTACATTTTACTTCATCTTCATGCATTTGGAAATTCATCTTGGGGAAGAAACATGTATGATCTATCTTAA GGTTTCATTTTCTTTTTCAGAGAATGGAATAAATTATTCGGCGTTTCCTCTCTTACCTCATTGCTTATGCTTTATAGACT ATAGAATTTGAACTTCTATTCTTTACAAATGAACCTGGCATTCTACCTAGGTTGCTTGGTTTGACGGTTCAAATTTCAAT TTCCATTTTAATTTGACTGTGTGTAGGCAGGCACCCATTGATAGAGAAGTCTTTGTAAACTTGGTTTGCATGAAACTCAC TGTATCTGTTTTTTTAGTGCATGTTTGGATACACCGGTTGAAAACCATGGTGAAGCCAATATCATGGTGGATAACCACGA GAGTTAAGGCAAGTTGCTTTTATGCACTGTGATTTTGGCTCACTGTGGGTTTACAGTATGTATCCAAACATGCTCTTAAT CTTTTTGCTTATCCACGATATTCAGGACATGCAGGAATTTACTATCTTATATCCATTTTGTAAGATGAAAATGTTGCTGC TTCATTTTAAAACCCGTTCATTGCCAACTACTGTAGAGAGTAGATCATAGTTCAAAGCTTATTTAGATGATGCCCAATAA GCTATCTGATCTTGCAATTGAAAGCTCTGTTAACCCTTGTTAATGGTTGTCCTTTGACTATATTTGAAAGATCCTTGTAC CACTTCCTGAACCAGAGGCGAGAGTAGCAATGTTTGAGGAACTCCTTCCCCCGCAGCCTGATGAGGAATCAATCCCCTAT GATTTGCTGGTCAACCAGACCGAGGGGTATTCTGGCTCGGATATCCGATTGCTTTGTAAAGAGGTAGCAATGCAGCCTTT AAGACGTTTGATGTCACAACTTGAACAGAGAGAAGATTTGGTGCCTGAAGAAGGTAAGTATCTCGATTATAGAATCTACC CTGTCTACATTGGAACACTTATAGCTGTTTCTTTTAAGTTGATTTTCAAATATGAGCAAAATTCTCATTGCATTTGAAAC AATGTGCTGGCTATTTACATACTAATTTAAATTTTACTCCTTATGAAATAAAAGTATTTTGTTGGATTGCAGAGCTACCA AAAGTTGGGCCAATCAGACCTGAGGATATACAGGCAGCTTTGAAGAACACAAGGCCATCAGCTCATCTTCATGCCCACAA ATATGACAAGTTTAATGCTGATTATGGTAGTCAAATACTTCAATGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0022500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCGTAGTATCGAATGGTAATGTGCATTCCAAAAGGTCATCGGATATGGCAATTTACGAGCAGCTTCGGAGCCAGGG GCAGAATGGGATCCACACAAATGATGTTTCACCAAACAATATGGATGAGAGGCCGCAGAAGTCTTTGCTTCCACCTTTTG AATCTGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATCATTCGTGGGAGTCCAGATGTGAAGTGGGAAAGC ATAAAGGGGCTGGAGAATGCAAAACGCTTACTTAAAGAAGCTGTTGTAATGCCAATTAAATATCCCAAGTACTTTACTGG TTTGTTATCACCATGGAAGGGAATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGACAATGCTTGCAAAGGCAGTTGCAA CAGAGTGCAAGACTACATTTTTTAATATTTCAGCATCATCTGTTATGGACGGCTTAACACGGACAGATGAACTTGTTTTT GTTTTGGCTGCAACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTTCGACGTCTTGAGAAGCGAATCCTTGTACCACT TCCTGAACCAGAGGCGAGAGTAGCAATGTTTGAGGAACTCCTTCCCCCGCAGCCTGATGAGGAATCAATCCCCTATGATT TGCTGGTCAACCAGACCGAGGGGTATTCTGGCTCGGATATCCGATTGCTTTGTAAAGAGGTAGCAATGCAGCCTTTAAGA CGTTTGATGTCACAACTTGAACAGAGAGAAGATTTGGTGCCTGAAGAAGAGCTACCAAAAGTTGGGCCAATCAGACCTGA GGATATACAGGCAGCTTTGAAGAACACAAGGCCATCAGCTCATCTTCATGCCCACAAATATGACAAGTTTAATGCTGATT ATGGTAGTCAAATACTTCAATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0022500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSVVSNGNVHSKRSSDMAIYEQLRSQGQNGIHTNDVSPNNMDERPQKSLLPPFESAEMRTLAESLSRDIIRGSPDVKWES IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVMDGLTRTDELVF VLAATNLPWELDAAMLRRLEKRILVPLPEPEARVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLR RLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQILQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23074:SF147
2 148 147 1.0E-155 –
PANTHER
PTHR23074
2 148 147 1.0E-155 –
MobiDBLite
mobidb-lite
27 46 20 - –
MobiDBLite
mobidb-lite
27 44 18 - –
SUPERFAMILY
SSF52540
67 279 213 8.74E-37
IPR027417
Gene3D
G3DSA:3.40.50.300
73 150 78 1.5E-34 –
CDD
cd00009
82 152 71 4.91827E-11 –
Pfam
PF00004
115 149 35 8.7E-11
IPR003959
PANTHER
PTHR23074:SF147
149 298 150 1.0E-155 –
PANTHER
PTHR23074
149 298 150 1.0E-155 –
Gene3D
G3DSA:3.40.50.300
151 291 141 1.1E-34 –
Gene3D
G3DSA:1.10.8.60
188 276 89 1.1E-34 –
Pfam
PF17862
213 249 37 4.1E-9
IPR041569

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0022500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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