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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0027200 |
| Transcript ID | LotjaGi4g1v0027200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FAD-binding berberine family protein; TAIR: AT1G30760.2 FAD-binding Berberine family protein; Swiss-Prot: sp|Q93ZA3|BBE13_ARATH Berberine bridge enzyme-like 13; TrEMBL-Plants: tr|I1K2X6|I1K2X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0027200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3294525..3297163) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTACGTTGAAAGGAGAATTGATTTTAGAAGAAGTTACTTCTAGCTTTCGTGATAGCATAATTAATTATGGAAAGCCT GTGAATTCAAACTTGCTAATTCATGTGAATGACGTTTGTCTTAGCTCAAGTATCCCTATACAGCATACTGGTACAGTTGC TCAAGTATATATAGCACATTGGTGACACCCTCCTTCAGCACAAAATTGTGAAGCCAAGATTTCAGAACACAAAACCATGG TGACAACAATCTCACCCTTGCCAATTTTACTCATCCTATTATCATTTTCATTGTCAGCTTCAGCTTTAATTCAAGAAAAT TTTGTCCAATGTCTCAACTTGAACTCAGACAAAACATTCCCATTTCAAACAACAATTTTCACTCCCAAAGATGCTTCATT CTCCACCATCCTTGATTCCTCTGCACAGAACCTCAGGTGTTTGCTACCTTCATCTCCAAAACCTGAGTTTATATTCACAC CCTCTCGCGATTCCCATGTCCAAGCAGCAGTAATCTGCTCCAAGAAGCTTGGCATTCATCTGAGAGTGCGAAGCGGCGGC CATGACTATGAGGGAGTCTCATATGTTTCTGAAATTGAGACCCCTTTCATAGTTGTTGATCTTGTCAAGCTTCGCGGCAT CAATGTTGATATCAAATCCAACACTGCTTGGATTCAAGCTGGTGCCACCATTGGTGAAGTGTACTACAGAATATATGAGA AAAGCTCAGTTCTTGGGTTCCCTGCAGGGCTTTGCACAAGCCTTGGTGTTGGTGGACACATCACAGGAGGTGCATATGGA ACCATGATGAGAAAGTATGGCCTTGGTGCTGATAATGTTCTAGATGCTCAAATTGTTGATGCCAATGGCAGAATTCTTGA CAGGGAAGCCATGGGGGAAGAGCTTTTTTGGGCTATCAGAGGAGGTGGTGGTGGAAGCTTTGGTATCCTTCTTTGGTGGA AGATAAAGCTGGTCCCTGTGCCACCAACTGTAACAGTTTTTACTGTAACTAAGACCCTAGAGCAAGGTAGTGTTAACACC ACATTTTTCATCCAAAACTTTAACGCATTGGTGTATAGTCGAATCCAAATTCCCTGCAGTTAAAATTTCTTAAAGTCATT GCGGTCATAATTTAATAGCCGTCGAATCAAGATCAGGTAACTGGAACTTAAAATGACAATCATTCACAAAAAAAAAAAGT CTGATCAAGATCGAATAGCTATAAAACCATGACTACACCAACTTTAGGGATTTTTGAAAATCCAAATGTCCAAATCAGTG TGTGGTGCTTTTACTTATATATTGCTTTAACTTCTTTTTTTTCCATTCAATGTGAGATTTCTTATTTTTAGTTTTTTACT CACTTGAATTCAACAGGTGCAACCAAGCTTCTATATAGATGGCAGGAAGTGGCTCCCTATATTGATGAGAATCTCTTTGT GAGAGTGATCATTCAACCAGCTAGTGGTGGAAACAAAACTCAGAGAACTATCACAACTTCTTACAATGCTGTCTTCCTTG GCGAGGCCAGAACACTCCTCCAAGTCATGAAGACAAGCTTTCCTGAACTGGGTTTAACAAGGAAGGATTGCATTGAAACT AGCTGGATCAAATCAGTGCTCTATATTGCAGGCTATCCAAGTAACACACCTACTGAAGTTCTTCTCAAAGGAAAACCAAC ATTCAAAAACTTCTTCAAAGCCAAATCAGATTTTGTGACAGAACCCATACCAGAAAGTGGTCTTGAAGGATTGTGGCAAA GATTGCTGGTGGAAGATATCCCCTTGATGATTTGGAATCCATATGGTGGGAAAATGAGCGAGTTTTCAGAATCTGATAGT CCATTTCCTCATAGAAATGGAACACTGTTCAAGATCCAGTACCTATCTATATGGCAAGAGGGAGACAAGAATGCTGCAAA TCATATAGATTGGATTAGGAAGCTATACAACTACATGACTCCTTATGTGTCTAGCTTCCCAAGGGGAGCATATGTGAATT ACAGGGATCTTGATTTGGGAATCAACTCCAAGAACAGCACAAGCTACATACAAGCAAGTGCTTGGGGTTATAGGTATTAC AAGGATAACTTCAACAGGTTGGTGAAGATTAAGACCAGAGTGGATCCTGAAAATGTTTTCAGGCATGAGCAGAGCATTCC ACCACTTCCAATCTAAATGTAAAAGACAACAAAAAGGTGAATAAGGAACTGTGCTGCTAGAATCATTAGACCTAGTATCT ATAAATTTGTGAAAGGGATGATTAGCTAGCTTAGAGCTATAAGGATGGTCTTTTTAATGTTGTAAGATACTGATTGAGGG CCTAATTGGTTGCTGTGTTTGTGATTTGTGTGTGTGAATTAAGTGCCTAATTGTTTGCAAATGTAGTTTCTCAAGCAAAA ACTGTAATAGAACTAGTGGTCTTTCTGTAAGGATATGATTCTAAAGTAAAGTGTCTCACATGAAAATTCATGGAGTTTAG CAGCCTATTTCTGCTTACATCCCTGTTAAAAAAATCGTGCTAAACTTGCTTTTTATGAATTTTGTGTGTTATAGCAAAAT GAAATGAGTTCCAAGTTACAGCAAACCTTGTATTTTGGGTGTTTCCCCCTTTTTCATATGAATATTCTCTTGAAAAAAT
CDS sequence (LotjaGi4g1v0027200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGACAACAATCTCACCCTTGCCAATTTTACTCATCCTATTATCATTTTCATTGTCAGCTTCAGCTTTAATTCAAGA AAATTTTGTCCAATGTCTCAACTTGAACTCAGACAAAACATTCCCATTTCAAACAACAATTTTCACTCCCAAAGATGCTT CATTCTCCACCATCCTTGATTCCTCTGCACAGAACCTCAGGTGTTTGCTACCTTCATCTCCAAAACCTGAGTTTATATTC ACACCCTCTCGCGATTCCCATGTCCAAGCAGCAGTAATCTGCTCCAAGAAGCTTGGCATTCATCTGAGAGTGCGAAGCGG CGGCCATGACTATGAGGGAGTCTCATATGTTTCTGAAATTGAGACCCCTTTCATAGTTGTTGATCTTGTCAAGCTTCGCG GCATCAATGTTGATATCAAATCCAACACTGCTTGGATTCAAGCTGGTGCCACCATTGGTGAAGTGTACTACAGAATATAT GAGAAAAGCTCAGTTCTTGGGTTCCCTGCAGGGCTTTGCACAAGCCTTGGTGTTGGTGGACACATCACAGGAGGTGCATA TGGAACCATGATGAGAAAGTATGGCCTTGGTGCTGATAATGTTCTAGATGCTCAAATTGTTGATGCCAATGGCAGAATTC TTGACAGGGAAGCCATGGGGGAAGAGCTTTTTTGGGCTATCAGAGGAGGTGGTGGTGGAAGCTTTGGTATCCTTCTTTGG TGGAAGATAAAGCTGGTCCCTGTGCCACCAACTGTAACAGTTTTTACTGTAACTAAGACCCTAGAGCAAGGTGCAACCAA GCTTCTATATAGATGGCAGGAAGTGGCTCCCTATATTGATGAGAATCTCTTTGTGAGAGTGATCATTCAACCAGCTAGTG GTGGAAACAAAACTCAGAGAACTATCACAACTTCTTACAATGCTGTCTTCCTTGGCGAGGCCAGAACACTCCTCCAAGTC ATGAAGACAAGCTTTCCTGAACTGGGTTTAACAAGGAAGGATTGCATTGAAACTAGCTGGATCAAATCAGTGCTCTATAT TGCAGGCTATCCAAGTAACACACCTACTGAAGTTCTTCTCAAAGGAAAACCAACATTCAAAAACTTCTTCAAAGCCAAAT CAGATTTTGTGACAGAACCCATACCAGAAAGTGGTCTTGAAGGATTGTGGCAAAGATTGCTGGTGGAAGATATCCCCTTG ATGATTTGGAATCCATATGGTGGGAAAATGAGCGAGTTTTCAGAATCTGATAGTCCATTTCCTCATAGAAATGGAACACT GTTCAAGATCCAGTACCTATCTATATGGCAAGAGGGAGACAAGAATGCTGCAAATCATATAGATTGGATTAGGAAGCTAT ACAACTACATGACTCCTTATGTGTCTAGCTTCCCAAGGGGAGCATATGTGAATTACAGGGATCTTGATTTGGGAATCAAC TCCAAGAACAGCACAAGCTACATACAAGCAAGTGCTTGGGGTTATAGGTATTACAAGGATAACTTCAACAGGTTGGTGAA GATTAAGACCAGAGTGGATCCTGAAAATGTTTTCAGGCATGAGCAGAGCATTCCACCACTTCCAATCTAA
Protein sequence (LotjaGi4g1v0027200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTTISPLPILLILLSFSLSASALIQENFVQCLNLNSDKTFPFQTTIFTPKDASFSTILDSSAQNLRCLLPSSPKPEFIF TPSRDSHVQAAVICSKKLGIHLRVRSGGHDYEGVSYVSEIETPFIVVDLVKLRGINVDIKSNTAWIQAGATIGEVYYRIY EKSSVLGFPAGLCTSLGVGGHITGGAYGTMMRKYGLGADNVLDAQIVDANGRILDREAMGEELFWAIRGGGGGSFGILLW WKIKLVPVPPTVTVFTVTKTLEQGATKLLYRWQEVAPYIDENLFVRVIIQPASGGNKTQRTITTSYNAVFLGEARTLLQV MKTSFPELGLTRKDCIETSWIKSVLYIAGYPSNTPTEVLLKGKPTFKNFFKAKSDFVTEPIPESGLEGLWQRLLVEDIPL MIWNPYGGKMSEFSESDSPFPHRNGTLFKIQYLSIWQEGDKNAANHIDWIRKLYNYMTPYVSSFPRGAYVNYRDLDLGIN SKNSTSYIQASAWGYRYYKDNFNRLVKIKTRVDPENVFRHEQSIPPLPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 4 | 528 | 525 | 0.0 | – | |
| PANTHER | 4 | 528 | 525 | 0.0 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 23 | 4 | - | – | |
| Phobius | 24 | 529 | 506 | - | – | |
| Gene3D | 24 | 132 | 109 | 5.7E-41 | ||
| SUPERFAMILY | 68 | 249 | 182 | 7.48E-44 | ||
| ProSiteProfiles | 72 | 248 | 177 | 17.725 | ||
| Pfam | 76 | 214 | 139 | 8.1E-28 | ||
| Gene3D | 137 | 526 | 390 | 1.4E-156 | – | |
| Gene3D | 251 | 464 | 214 | 1.4E-156 | – | |
| Pfam | 468 | 525 | 58 | 2.6E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi4g1v0027200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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