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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0032300 |
| Transcript ID | LotjaGi4g1v0032300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Clathrin assembly family protein; TAIR: AT1G03050.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050; TrEMBL-Plants: tr|A0A1J7IJM8|A0A1J7IJM8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0032300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:3964684..3969400) extracted from Lotus japonicus Gifu genome v1.2.
TGACATCTCATTCTGTTCCCACATTTTCATGCTAGAAAAACGGGCTATGCTTGGCCAATTTTGAGCCTGGTCATAATGCT TTGACCCAGAGGAAACACAGAGAACAGGAAGAGGGAAGAAGACAGAACAGATAGAAAATAACTATCTAACCTTCTATACC TCATTCCTTCATTTTTATATATGTTCCCTCTAAACATCTGGCATAGAGGTAAAGACAACAAATAACACTCTTATTCTCCT GCGTTTGTTTCTAATTTGTTTTTCTGCATAGATAGATCTCCATAAGAAGCAAGGCTTGACAAAAGTATCGTCACCATTCT CCTACATATTTCTGCCCCCTCTTGTGCTCTCAAAGCATAGCAGGTAGCGTACTGTCCCGTTTATTCTTCCTTTTCTCTTA TAGCTAATGGATCCATAAATTTTATGTTATGAACGAACATTCCTTATCATTTTAGAAGTGCATGTAAAACATACGATTCT CTGAAAACGTTACGCCTTCATCTAATTAACAAAATCAGAACTTAATGATAAATAATTTAATTAATTTGCAGGGGGCGGCG ATAATTGTGGAGCTCCAAAATCATATATAACATCAAATAGCCTGATACAAACAAGTCATAAATAAAACCCAGCAACAAGC ATTATGTCTCCAAGCACATTCAGAAAAGCAATTGGGGCAGTGAAAGATCAAACAAGCATAGGCCTAGCCAAGGTTGGAAG TAGCACCTCACTTGCTGACCTTGACATAGCCATTGTGAAGGCAACAAGGCACAATGAATACCCGGCTGACGAGAAGCATA TAAGGGAGATTCTGAGCTTAACATGTTACTCTCGCGCGTACATCAGCGCGTGCGTGAACACCCTCTCAAGGCGGTTGAGC AAGACAAGCAGTTGGACAGTGGCTTTGAAAACACTTATCTTGATCCAGAGGTTGCTGGCAGATGGTGATCCGGCGTACGA GCAAGAGATGTTCTTCTCGACGCGGCAAGGGACTCGCCTTCTCAACATGTCTGATTTTCGAGACAAATCGAAATCTAACT CGTGGGACTTCTCTGCGTTTGTCCGCACATATGCTTTGTATCTGGATGAGAGGCTTGAGTACAGGATGCAGAATAGGCGT GGAAGGCGTAGCAGGTTTTCTCTTGATGAGGATGAGGAACCCAAGGAAAGTTTTAGAGAAAGATACAGAGAAAGAGCCAG AGAAAGAGACAGGGATAGCGATAGAGATAGGGAAGTTGTTGTGAGAGCCACACCATTGCCTGAAATGAAGAATGAGCAAC TATTTTCCAAAATGCAGCATTTGCAGCTACTGCTTGAGCGCTTTTCAGCTTGCCGCCCTACAGGTTTGTAATGATATTAA AACATGCAAAATTCCTTGATAAAGCATGAGAACCAGACCTATATTTATATTTGTTGGAAAATAGGTAGAAAAAAGAGCCT ACATGCATTTTAAAAATGCTATGAAAGAAAGATTCAAATCCTTCATATGCAATAAAGGAATTTACAAAAGGAACGAAGCA GGAGATGAAGTTTAAATCACTTGATGAGTGTAAAATTCTTCAAGTTGTTGATTAGTCATTTGATGAACAGGGGTTAGAGT CTATGAGGGTAAAGCCATTAGATCAACTCTTCTTCTCCGAGACAAAGTTCTTTCATTTTAAAATGAAGTCTTTGTTTTTT TCAATCTAATTGGCTATTTGCGTAAAAAGAATAACTTGTCTTGATTGAGAACGTGGATATATAAGCACTGACAATGTCGT ACTTTTTGAATGTTAATCATGTGGAAGTCTCTTTGTCGTGTCTAGTGGCCATGTTGATGCTTCATAGCATTTTTTTCCTA ATTACGTACTAATTGCTATTGCTAGTTTAGCAAATACATTCACTTCACTGTTTCAAGATCATGCACCGTATCAAGGACTG CAAACACAGAATTTACCATATATAATATAAGTAATATTCATGTAAAAAACCTATCTAACGGTTATTTTATTTTTAACCTA ACAGGGAAAGCAAAGACCCATCGACTTGTTATAGTGGCTCTCTACCCAATTGTGAAGGAGAGCTTTCAAATATATCGTGA CATGACAGACATACTAGGTATCTTCATTGATCGTTTAACTGACATGGAGGTACCCGATTGCATCAAGGTGTATGACATTT TCTGCCGTGTTGGAAAGCAGTACGATGAACTAGAGTCTTTTTACAGCTGGTCCAAGACTATTGGAATTGCACGCTCCTCA GAATACCCAGAGATTGAGAGGGTCACAACCAAGAAGCTAGATGTCATGGATCAGTACATCAAAGACAAGTCCATGTTAGA ACAAACTAAGAAGAACAATCCCCAAGAGAAAAAGAATGAAGAAGAAGATCCAGAACCAGAACCAGAAGAGGATATGAATG CAATCAAGGCCCTGCCGGCACCAGAAGAATTCCATGAGGAACCGGCAGAAGAAGTTCAGGAAGAGACAAAGGAAGAGCCA GAAGAAGAAAAAATAGTGCAAACAGAAGGAGATCTATTAAATTTAGGAGACACTACATTGGACAGTCAACAAGATGTGGA CAAACTAGCCTTGGCGTTATTTGATGGAGTTGCACCAGCAACGAGCACCACCCAAGCTCTTCCATGGCATGCTTTCGATG ACACTGGGGATTGGGAAACAGCGTTGGTCCAATCATCTAGCAACTTGTCCAACCAGAAACCAGCATTGGGTGGTGGCTTC GATACATTGTTGTTGGATGGCATGTACAAACATGCAGAAACAAATGCAGCTATGCAAGGGCTAGGTTATAACGGCAGTGC AAGCAGCCTCGCGCTAGGGTCGGCTGGAGGGCCTGCGATGCTAGCATTGCCAGCCCCACCAATATCTGGGAGTGGCTCAG GTTTAATAAGTTTAGATCCGTTTGCAGCTTCGCTGGCCATGGCACCTCCAGCTTATGTGCAAATGTCAGAGATGGAAAAG AAACAGAGGTTATTAGTGGAGGAACAGTTAATGTGGCAGCAATATGCATATGGTGGCATACAAGGACAAGCTCCATTCGC AAGACCACAATCCAACAATATCTACATGGGAGGGCATGGGCATTCACAATACTATGGCAATTATCATTATTAATTAGGAT AATTTATCACTAGTTCGAACTGACCCAACTTCTTCTCTTTGCCCCCTCTTCCAAGGTGCAGTAAATGTTAACCAGCTCAC TAGAAAAGTTTGTTACTGAACTTGTTGCAATTGAACAAACACTCACAAGTGTAAAGACAATTACTCTGTTTTATCTGCCC CCTCCCCTTTATATGACTAGAATAGCAAATTATTTATTAGCTATAACCTAAAGTATTCATCAAAAAGCTCAATAGATAAA TTGTGGCTCCCCTATTTTAGTAATAGAATTGTTCCAAAAGAGACTCCCAGCATGAAGATTGAAGTTTAAGGAACAGAGCA AGTGCAACAAACAAGCCATGTACCTACTACAACCTAAAATAAAATGATCAATGATGCAACCCTGAAAAATACAAACCAGA GCTCTGCGCTATAGTTTGGCTTAATTTCTTTAGCATTCAAAATCCAATGGCAATAATTTATCATCAACTGACACAGCATT ATTTTGACTAGTTAATAGAATCTCACCATGCCTCCTACTTTCATCCCTAAAAGTAACAACCATGAGATGAGTATTGTTTA AGAGCAACAACGAAATGAACAAATCACATCCAAGCTTTAAACAATATTAAAGCAAGCTCTTCAAGAACCAACAGCTATGT TGCCCTTGTGCAGAAGAGACAGCAAATATAAATGAAATCAAACGCGGCAGTAAAAGAATAGTTTGCACATCGTAGGATAT GAAATTGAAACAACTATGACAAAAAGGAGAAATCATCCATTGATATTTAAAACATTTCTCAAACACAGTATTTCTGCAAG ACTAAAAAGCCAGCCAAATGGAAAGCAAAATGGGCGAAAAACAAATCGGAAAACTGCAAAATGGTAGTAGTTGAACACCT AGAACAGAGAGGTTCCTTTTCCCTTCTTGTCACCACCAATCTCAAAGTGCTTGCACCTCTGCAAAACAGAAACAATAACC CACCATTAGCAAAGTTAACCACAACCCACATGAGAAAAACGATACCACAACCCACACACAATTACTACCTTGATAGCATG CTGGGAAACATGTTTGCAGCCCTGACACTGCAACCTCAACACAATCTTCTTGGTAGTTTTTGCCTAATCAAAACACAAAA AGCATAGAATTTGAGCAATACCCATCACTGAAAAAAGAAAACCCATTAAGAAATTGGCTTTTGTTTCACCTTTTTGTGGA AAACAGGCTTGGTCTGTCCACCATAACCAGATTGCTTGCGGTCATAACGACGCTTCCCCTGAGCAGCAATGCTATCTTTA CCCTTCTTGTATTGGGTAACCTTGTGCAGGGTATGCTTCTTGCACTCCTTGCTCTTGCAGTAGGTCTTCTTCGTCTTCGG AACGTTCACCTGAAATCCAAATCAAAATCAAAATGCATTTCGGAATCAACATCGCAGGAGATTGGGAATTTTTCAACAAA GAGGGGTGAAGCATGAAGCAGATAGCGAAGAGGAAGAAGAAGAGGAAATTACCATTGCGGCGGCGAAATTGAAGATCGAT TGAGCAAAGGAAGAAACACGATACCAGTGTCTAGGTGTTGTTTTAATGGCTTTGAGAATTAGGGTTTACTGTTCAGT
CDS sequence (LotjaGi4g1v0032300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCAAGCACATTCAGAAAAGCAATTGGGGCAGTGAAAGATCAAACAAGCATAGGCCTAGCCAAGGTTGGAAGTAG CACCTCACTTGCTGACCTTGACATAGCCATTGTGAAGGCAACAAGGCACAATGAATACCCGGCTGACGAGAAGCATATAA GGGAGATTCTGAGCTTAACATGTTACTCTCGCGCGTACATCAGCGCGTGCGTGAACACCCTCTCAAGGCGGTTGAGCAAG ACAAGCAGTTGGACAGTGGCTTTGAAAACACTTATCTTGATCCAGAGGTTGCTGGCAGATGGTGATCCGGCGTACGAGCA AGAGATGTTCTTCTCGACGCGGCAAGGGACTCGCCTTCTCAACATGTCTGATTTTCGAGACAAATCGAAATCTAACTCGT GGGACTTCTCTGCGTTTGTCCGCACATATGCTTTGTATCTGGATGAGAGGCTTGAGTACAGGATGCAGAATAGGCGTGGA AGGCGTAGCAGGTTTTCTCTTGATGAGGATGAGGAACCCAAGGAAAGTTTTAGAGAAAGATACAGAGAAAGAGCCAGAGA AAGAGACAGGGATAGCGATAGAGATAGGGAAGTTGTTGTGAGAGCCACACCATTGCCTGAAATGAAGAATGAGCAACTAT TTTCCAAAATGCAGCATTTGCAGCTACTGCTTGAGCGCTTTTCAGCTTGCCGCCCTACAGGGAAAGCAAAGACCCATCGA CTTGTTATAGTGGCTCTCTACCCAATTGTGAAGGAGAGCTTTCAAATATATCGTGACATGACAGACATACTAGGTATCTT CATTGATCGTTTAACTGACATGGAGGTACCCGATTGCATCAAGGTGTATGACATTTTCTGCCGTGTTGGAAAGCAGTACG ATGAACTAGAGTCTTTTTACAGCTGGTCCAAGACTATTGGAATTGCACGCTCCTCAGAATACCCAGAGATTGAGAGGGTC ACAACCAAGAAGCTAGATGTCATGGATCAGTACATCAAAGACAAGTCCATGTTAGAACAAACTAAGAAGAACAATCCCCA AGAGAAAAAGAATGAAGAAGAAGATCCAGAACCAGAACCAGAAGAGGATATGAATGCAATCAAGGCCCTGCCGGCACCAG AAGAATTCCATGAGGAACCGGCAGAAGAAGTTCAGGAAGAGACAAAGGAAGAGCCAGAAGAAGAAAAAATAGTGCAAACA GAAGGAGATCTATTAAATTTAGGAGACACTACATTGGACAGTCAACAAGATGTGGACAAACTAGCCTTGGCGTTATTTGA TGGAGTTGCACCAGCAACGAGCACCACCCAAGCTCTTCCATGGCATGCTTTCGATGACACTGGGGATTGGGAAACAGCGT TGGTCCAATCATCTAGCAACTTGTCCAACCAGAAACCAGCATTGGGTGGTGGCTTCGATACATTGTTGTTGGATGGCATG TACAAACATGCAGAAACAAATGCAGCTATGCAAGGGCTAGGTTATAACGGCAGTGCAAGCAGCCTCGCGCTAGGGTCGGC TGGAGGGCCTGCGATGCTAGCATTGCCAGCCCCACCAATATCTGGGAGTGGCTCAGGTTTAATAAGTTTAGATCCGTTTG CAGCTTCGCTGGCCATGGCACCTCCAGCTTATGTGCAAATGTCAGAGATGGAAAAGAAACAGAGGTTATTAGTGGAGGAA CAGTTAATGTGGCAGCAATATGCATATGGTGGCATACAAGGACAAGCTCCATTCGCAAGACCACAATCCAACAATATCTA CATGGGAGGGCATGGGCATTCACAATACTATGGCAATTATCATTATTAA
Protein sequence (LotjaGi4g1v0032300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPSTFRKAIGAVKDQTSIGLAKVGSSTSLADLDIAIVKATRHNEYPADEKHIREILSLTCYSRAYISACVNTLSRRLSK TSSWTVALKTLILIQRLLADGDPAYEQEMFFSTRQGTRLLNMSDFRDKSKSNSWDFSAFVRTYALYLDERLEYRMQNRRG RRSRFSLDEDEEPKESFRERYRERARERDRDSDRDREVVVRATPLPEMKNEQLFSKMQHLQLLLERFSACRPTGKAKTHR LVIVALYPIVKESFQIYRDMTDILGIFIDRLTDMEVPDCIKVYDIFCRVGKQYDELESFYSWSKTIGIARSSEYPEIERV TTKKLDVMDQYIKDKSMLEQTKKNNPQEKKNEEEDPEPEPEEDMNAIKALPAPEEFHEEPAEEVQEETKEEPEEEKIVQT EGDLLNLGDTTLDSQQDVDKLALALFDGVAPATSTTQALPWHAFDDTGDWETALVQSSSNLSNQKPALGGGFDTLLLDGM YKHAETNAAMQGLGYNGSASSLALGSAGGPAMLALPAPPISGSGSGLISLDPFAASLAMAPPAYVQMSEMEKKQRLLVEE QLMWQQYAYGGIQGQAPFARPQSNNIYMGGHGHSQYYGNYHY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 601 | 601 | 7.4E-303 | – | |
| PANTHER | 1 | 601 | 601 | 7.4E-303 | – | |
| Gene3D | 2 | 157 | 156 | 1.7E-44 | ||
| ProSiteProfiles | 25 | 161 | 137 | 35.202 | ||
| SMART | 31 | 161 | 131 | 2.7E-46 | ||
| Pfam | 32 | 334 | 303 | 1.4E-91 | ||
| SUPERFAMILY | 32 | 153 | 122 | 1.01E-32 | ||
| CDD | 33 | 154 | 122 | 5.86482E-66 | – | |
| MobiDBLite | 176 | 196 | 21 | - | – | |
| Gene3D | 200 | 346 | 147 | 1.5E-28 | ||
| SUPERFAMILY | 204 | 334 | 131 | 5.1E-33 | – | |
| MobiDBLite | 336 | 353 | 18 | - | – | |
| MobiDBLite | 336 | 396 | 61 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospholipid binding | Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester. | ||
| Molecular function | 1-phosphatidylinositol binding | Interacting selectively and non-covalently with phosphatidylinositol, any glycophospholipid with its sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. | ||
| Cellular component | Clathrin-coated vesicle | A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes. | ||
| Molecular function | Clathrin binding | Interacting selectively and non-covalently with a clathrin heavy or light chain, the main components of the coat of coated vesicles and coated pits, and which also occurs in synaptic vesicles. | ||
| Biological process | Clathrin coat assembly | The process that results in the assembly of clathrin triskelia into the ordered structure known as a clathrin cage. |
Expression pattern of LotjaGi4g1v0032300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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