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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0038400 |
| Transcript ID | LotjaGi4g1v0038400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT1G72220.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54; TrEMBL-Plants: tr|G7JV62|G7JV62_MEDTR RING-H2 zinc finger protein; Found in the gene: LotjaGi4g1v0038400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:4604821..4608232) extracted from Lotus japonicus Gifu genome v1.2.
CGTGCATATCCATTAAACTCAAATCAAAATTCAACCGATTAATCAAACAAACGTGAACCAACCAATTACATTAATCTGGT ATGGATCATAGGCTCAACCCATTGTCTCCTCTAAAAATCACTATTTACATGCCCAACAAATCATGATTAAGAAAATGAAA CATACTTTTCCTACCCCTTCATCTTCACCATGGTACAAAGTCAAACTCTCAACCTCACCTCACCTACCCAAATATTCATC CAATCCCCACCTCTTACTTCTTCAACTCCCATGCTCTTTTGATCATTCCCCTCTTCCCCTTCACCCCCTTCACCCTTCTC CGATATGGGACTTCATCACAGAAGGCTGTTGTCACCTAACGACAACTGTGAACTCATCTGCAATGAGGAAGAAAAGTCTT GTTCATCAAACTGCCAAGATTGCATCAAAAACTGCCTTGAACTTTCATCTTCTCTGAGTCAAACCAAGCACAAAACCTCC ACCTACTTGATCATCGGTTTCTCAATCGTGGCTGCAGTTTTCTTCGCCATGTGCTGCTATGCTATCTACGTCAAGTTCAT CTCCCCATGGAACAGGAGGAGGAGGAGGAGAAGAACAACAACCTTAGCACTGCAACAAACAGAGGAATCTTTCACCGACG AGGAACATGGTCCTGTGGTTGACCAGGATCACCATATCTGGTTCATACGCACCACCGGTCTGCAACAATCGATTATCAGT GCAATCACGGTTTGTGAGTACAAGAAAGGTGAGGGGTTGGTTGAAGGAACTGATTGCTCTGTTTGCTTGAGCGAGTTTGA AGAAGGTGAGAATCTCAGGCTTTTGCCTAAGTGTAACCATGCTTTTCATTTGATTTGTATTGATACTTGGCTGAGATCGC ATACCAATTGCCCCATGTGTCGTGCTCCGATTGTTGCAAATCCTGCTATGGTTTCATCTATGGAGGTTGATATTTTGGGT GAGAATTCTGTGGAAAGTGGTGTTCATGGGGGAGAGAACAGTGGTGGTGGTGGTGGTGGTGGTGAGAGGTTGAGGAATGT TGGAAATGAGGAAGAAGAAGAAGGGGAAGGTGGTGGAGATGGGAGGAGGAGGAGGAGCAGGGTATGTGAAAGTGGGAGGT TAGGTTCTGAGCTGGTGAATGTGCTGCCTAGGAGATCAGTGTCTCTTGATTCTGCTTCTGCTGCTAAGATCAATCTTGCT CTTACTAATGTTTTATCAGTGCAATCTCGTGGGAATTCAAAGAGGGTTTCTGGGAATGGGAATTCTTCTTCTTCTAGGGG AAGTAATCTGCAGCAGAGTGCGCCTTGTTCGATGAAGAGGTCGCGATCCTACAATGGTAAGCATCTGCTATCCTGGTATA GCCGCAGCCAGAAAAAGCCAAATGCTCCTCCAAGAAGCTTTTGAGATTCCTCTTGGCTCTTTATGTAGAGCCAGTTTGGA TGCGGATCAAAGAACACTCATTGGAGCTTATTCAGTGCTTCTTTGCTAGTAGATAAACTTCAATAAGTATTGTTTAGTCC TTATCCAATCAGGATGGTAATGTATTTCTAACTCTCTACAAGTTGAGGGTTTGAAAGATTTCTGTTTGAATCAAATAAGT TATGCGATGATGAAGTTTATCTAGCAAAGTAAAAGTTCACACTTCACAAACACACTGAAGATTGCCCTTGATAAGTTTTG CTCAGAAGGTGCCATAGCATCAAAATGCATGTATAGCTTTTCCTCATCTTAAGTCAATGGATTGCTGAATTTATGTTATG GGCACCTACCTTCTATATATTTTTAGGGGCTTCTTATCTAAACTACTGATAGTTTGTTTGAATCAGGAGTGAAGAACACT TATTATAGCTTATCTTCTAAAATAACACTAGATAAGTTCCAATAAATGTTCATTGCTCTGCATCCAAATGAGTTCTTGAT CACACATTCTATATTATTATCCACTTGTTAATCTTTGTGTGGAATTTTATTTACTGTTTTTTATCATAGACCAGAGCTCT AATTAGAATTATCAGCAGAACGTGCCTATTTTAGTTAAAAGGGTATAAAATCCAAGTGTTCCTCTAGAAAGCTTTAGTTT GTCTTATTATGTCAGGTTATAATTACATGTGAACTGAATTAGAAATGGTTTAAATGTCTCTAATGGCTTTATGTTGCCTC TGTAACTATATTTAGAAAGTCGAGAGTTTCAGAGTTTTCTGTTATGTGAAGTGTTGTGGTAAGAGACTACTTAACCTGAG TAAGGACTTATGGATGTATTAAAGGGATGCTTGTTGGACCACTTCTATGTGGAAGGACTCTGTCTTCTTGTCTGAGTAGG TACTAGAGGTGGGTACTTAGATACTCAAGTCAATAAAACTAAAGGAGACATAAAATTTAGGGTTAGAATGTAGTGTGAAT CAGAGGAGTGCCGAGGAGTGCCTTCTGATGTGTACTTATACACTAATGGTGTAACAAACCTAGAATGAGTCATGCAAAGA TATGATAGAGGTATGTTAAAATATAACATATACTTTCCGGTAATAGTAGATAACACATTGATTTAGGAATCCTATTATCA TAAGCGTAGGACGTTGTCAATATTGGACTAAAGTTTATGGACTAATCATTTTATTCCATAACAATTGTCCTCCGGTCCAA GTATCCTAGGCATTAGGATGCTAGGAATGTCAAAATCTGAGTAGTTTCCACTCCAAAGAAATTAGATGCTTGGTCTTCCC CATGTCGTATACTCATGATTCGAGATGAGTTTAAGAGCTTCAAGGCATGTGTCATGATGATATGAGACGAACTCACACTG CATGAGGTTGTTCCTTTTGTATTGACGCCTTGTCTGAGATCACCTAGGATGGGAAGATGTGTGTCTTGTCATGGTTTGAT CGCTGATTGAGTAAGCAAGCGTTGTGAACTTTGGATTAGTGATGATTGATTCGATGTGATTCTCTCAAGGTGGCGCAACG ATGAGTTGCAGAGTGCGAAATATCGTCTTTGCCCTCACTTGGAAAGTGAACTACTGCTTTTGTCCCTGTCTCGTTGCCTT TAAATCACGAATTTGGGCGTCATTTTGCCTTCTTATTTTTGCCTTCTTGGACAAGGATCTGCCTCAAGAGACCTCTGATG CAGGACGCGTGAATCGCTTCTTGCTAAGAATTTAATTTTTTTTTTAATTTGGTAAGTTCTCCATTCTTCTCGTTGTTTTC CTTTTTTATTGCATACTTGCATGTTAGGATGCAGCGAAAGTTGGGAACTTTACATTGTGCCTCATGGGTTGTTTCACTGT CGCGTCACACTACAAAAAAAACATTGATTGCCAATGGCGAGAAGCCGTCGATAATCACTTAAAATAGTCGATAAGAAAAA TTTACCGACGACTGACCGGTGACAAAAAAATCGAGTGATATTGAGTTCGTCG
CDS sequence (LotjaGi4g1v0038400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACTTCATCACAGAAGGCTGTTGTCACCTAACGACAACTGTGAACTCATCTGCAATGAGGAAGAAAAGTCTTGTTC ATCAAACTGCCAAGATTGCATCAAAAACTGCCTTGAACTTTCATCTTCTCTGAGTCAAACCAAGCACAAAACCTCCACCT ACTTGATCATCGGTTTCTCAATCGTGGCTGCAGTTTTCTTCGCCATGTGCTGCTATGCTATCTACGTCAAGTTCATCTCC CCATGGAACAGGAGGAGGAGGAGGAGAAGAACAACAACCTTAGCACTGCAACAAACAGAGGAATCTTTCACCGACGAGGA ACATGGTCCTGTGGTTGACCAGGATCACCATATCTGGTTCATACGCACCACCGGTCTGCAACAATCGATTATCAGTGCAA TCACGGTTTGTGAGTACAAGAAAGGTGAGGGGTTGGTTGAAGGAACTGATTGCTCTGTTTGCTTGAGCGAGTTTGAAGAA GGTGAGAATCTCAGGCTTTTGCCTAAGTGTAACCATGCTTTTCATTTGATTTGTATTGATACTTGGCTGAGATCGCATAC CAATTGCCCCATGTGTCGTGCTCCGATTGTTGCAAATCCTGCTATGGTTTCATCTATGGAGGTTGATATTTTGGGTGAGA ATTCTGTGGAAAGTGGTGTTCATGGGGGAGAGAACAGTGGTGGTGGTGGTGGTGGTGGTGAGAGGTTGAGGAATGTTGGA AATGAGGAAGAAGAAGAAGGGGAAGGTGGTGGAGATGGGAGGAGGAGGAGGAGCAGGGTATGTGAAAGTGGGAGGTTAGG TTCTGAGCTGGTGAATGTGCTGCCTAGGAGATCAGTGTCTCTTGATTCTGCTTCTGCTGCTAAGATCAATCTTGCTCTTA CTAATGTTTTATCAGTGCAATCTCGTGGGAATTCAAAGAGGGTTTCTGGGAATGGGAATTCTTCTTCTTCTAGGGGAAGT AATCTGCAGCAGAGTGCGCCTTGTTCGATGAAGAGGTCGCGATCCTACAATGGTAAGCATCTGCTATCCTGGTATAGCCG CAGCCAGAAAAAGCCAAATGCTCCTCCAAGAAGCTTTTGA
Protein sequence (LotjaGi4g1v0038400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLHHRRLLSPNDNCELICNEEEKSCSSNCQDCIKNCLELSSSLSQTKHKTSTYLIIGFSIVAAVFFAMCCYAIYVKFIS PWNRRRRRRRTTTLALQQTEESFTDEEHGPVVDQDHHIWFIRTTGLQQSIISAITVCEYKKGEGLVEGTDCSVCLSEFEE GENLRLLPKCNHAFHLICIDTWLRSHTNCPMCRAPIVANPAMVSSMEVDILGENSVESGVHGGENSGGGGGGGERLRNVG NEEEEEGEGGGDGRRRRSRVCESGRLGSELVNVLPRRSVSLDSASAAKINLALTNVLSVQSRGNSKRVSGNGNSSSSRGS NLQQSAPCSMKRSRSYNGKHLLSWYSRSQKKPNAPPRSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 53 | 53 | - | – | |
| PANTHER | 47 | 351 | 305 | 1.0E-94 | – | |
| PANTHER | 47 | 351 | 305 | 1.0E-94 | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 54 | 80 | 27 | - | – | |
| Phobius | 81 | 359 | 279 | - | – | |
| Gene3D | 125 | 200 | 76 | 1.5E-21 | ||
| SUPERFAMILY | 145 | 199 | 55 | 2.3E-21 | – | |
| CDD | 150 | 193 | 44 | 1.50818E-15 | – | |
| Pfam | 150 | 193 | 44 | 7.9E-13 | ||
| SMART | 151 | 192 | 42 | 8.5E-8 | ||
| ProSiteProfiles | 151 | 193 | 43 | 12.711 | ||
| MobiDBLite | 216 | 259 | 44 | - | – | |
| MobiDBLite | 237 | 259 | 23 | - | – | |
| MobiDBLite | 300 | 332 | 33 | - | – | |
| MobiDBLite | 300 | 334 | 35 | - | – | |
| MobiDBLite | 340 | 359 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0038400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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