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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0042500 |
| Transcript ID | LotjaGi4g1v0042500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptide methionine sulfoxide reductase msrB; TAIR: AT4G21860.1 methionine sulfoxide reductase B 2; Swiss-Prot: sp|Q9C5C8|MSRB2_ARATH Peptide methionine sulfoxide reductase B2, chloroplastic; TrEMBL-Plants: tr|I3T0F9|I3T0F9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0042500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5008426..5011613) extracted from Lotus japonicus Gifu genome v1.2.
CCTATACAGCGCGTTGATTCACAACATTTTCGTTTGTTAGAGGTTTTTACCGCTACAAAGATTTTTTTTTTTTAAATGCG ACGCAAGCAATATTGTAGCGTGGTTCGTGAAACATTAAAATCAATTAATTCCATATTATTATTTTCTCACAAAACAATAG AATAAATAGCACCGCCCATAAAAAAATAAGATAAAAAGCTAACATGATGTAAATGTCCGATTTGGATTGTGCGCATAACA AGATGATGACGAGCCTGAATATTGTAAGAACCACACCTCTTTGTGTTTCTACCAAATCCATTTTCTCGAACCTTCTTCTT TCTCATTCCACATCTCACTTCACCGTTTTCCCTTCAAACCCTATCATCACTCCCTCCTCCATTTCCATTCGTCATCAGCA GCGGAAGCGTGGTTTCCGTGGTGGTGTTGTTGTAGCCATGGCTGCACCTCAGAAATCGGAAGATGAGTGGCGTGCTGTTC TCTCCCCTGAGCAGTTTCGGATTCTCAGGCAGAAGGGCACTGAGTATGATTCCTTGTTACTCTGTGATTTTAATTAGCTC AATTTTCAATCATGAATCAGAGTATGTTGATTCTAGAACAGACATGGATAGGATAACACTGACATGTGAATATGGTGAAT TTATTATATGAATCTACATGGCTGTTAATACATGTAAATTAGTACAAAATTATTGCAAAAACATTAATCTTTAGCTTATA GATAATTCATATATTAAGAAGAATTAGTCGGGTTCGATCACCGCACAATACACCCGGGAGAAGGATGAAGAGCCCTAACT TTCACTAAATCCCAAATCCAGAATAGTCGGCATCTGAAGGGTGACCGGATACCGGGTTGTTTACACGCACACAAAAATCA CATATTAAGAAGAATTAGTATAATTATGAGGTTAATAACTATGCATGCTGTTTAAATAAATTTCACATAAACATTTCATC AATTGTCTCATTACAATTAAATTAAAATTTCAAAAAGGTAAAAAAGGCAAAAGTCTGACGTGATACTACTACAATTGTCT TGAGGTGTTAGTGCTTTCTTGATGAATATCTAAGGGTTACCAATGGATATTCAACAGTGGTAAGGTACTATGTTTCAATG AACTGTTTTGGTATATGTGCGTGGTATCTCCCTGGAAGAGTGTCATTGTATTGTGAGCTTCAAGGTTCTTGGCTTCAATC AAATTGAGCCCATGAAATTTGGAATCATCTTCACAACTTGTTGTCCAATTTGTGTTATGTAGAGGATATCTAGATATTTA ACTCCCTGAACCTTGTTGGGCTTCATGATGGGGTGACTTTCCTTTCATCGTTCAAATGAAAGTTAGACTAGCAAAGGAGA GTTTCAGTGTCTTCTATTATTAGTCATGTACTCTACTAGGTGGGTACTATTATGGCTTAATGGCATATAAAGCCAGGATC ATTGTTTACGATATCTTTTTAGAAACTTTGGCTTAATTTCCTTGAGGGGAAATTAATGAAGAAAAATGGTGTCACTTGGA GGATTACTCCCAGATTAAAGGCTACAAGCCTACAACATGAACTACTCATTAATTTGCTCAATCTCATAAATTGTGTGATC ACAGCAGAGAGAAGTTGCGTATGACTGTATTCTCTTGTAACTCCCATTATATTGTTTGGCTGATTTCCCCACATATGTGC ATCTTTACTTGGCTCTTCAAACTCCAAAAAATTTATGGAGATAAACAGAAGAGTAGAGAATGATGCTGAGTGGAACACTC CAAGTAACTTTGTATCAGGCTGAAGTTTTGGGTGATGTGATGATTCTAGAATTTTCTAGTGATTAATGAACAGATCTATA GTTACATATTTCCCAGCTTGAATGAATAATCAATGATGATATCTAAGTATACTCTAAATTGGGATTTGCTTCTTTGTTAA CAAGAAAATATTTTGGTACTATCCAGGTACCCTGGAACAGGAGAATATGACAAGTTCTTTGCTGAAGGAGTCTACAGATG TGCAGGTTGCGAGACTCCTCTCTACCGGTCGACAACAAAATTCAATTCTGGTTGTGGGTGGCCGGCCTTCTATGAGGGTC TTCCTGGAGCCATATACCGCAATGTGAGTTTACTTGTTTTTGTGCTACTCCTAGCTTTTTCTTAACTATTTTGCACAGTA CTAAAATTTTCATTAGCAATTTAAGTTTATATGAAGTTGATAAATTTGACGTGTTTCACTGCCAGCCGGACCCTGATGGA AGGAGGATAGAAATAACATGTGCTGCTTGTGGGGGACATCTAGGTCACGTATTTAAGGGTGAAGGATTTCCAACTCCCAC AGATGAACGGCATTGCGTCAATAGTATTTCACTGAAATTTGTACCGGCGAATACTTAGTTTTTTCCAATGAAATCTGCTG TATGAATTTGGTAGTCAAGAATCAAGATCCTTAAATAATCAAACACTGTACTGAAATTGGGACCAAGTTTTAAAGATTGA TGGCTGACTGATTATGATACTGAAATGATGACTGATCTTAAATGAGCAATTGTTCATTTATTCATTTACTTCCTTCCTCT CTTGAGGCTGGATCTTAGTATGAGTTCTATATGGTTTCTTTAGTGTGTAATTTATGTTTGAACCTATTGAGGGTTTGTAA TTGTTATCTATGGATGGCACACACCATCTTTTGTTTATAATTATGATAGTCTCTAAACTATTTCCCTCATACTGAACTGA AGAAAAATAACAGTGTATTAGCATATTTGAAATGAGGGATGCTGCATTTCATCTGGACTATTATTGTTTTCATACACAGC ATCTCCGGGGTTGTAACTTCTAGGTAGAGTTTTAGACCTGCAATGCTGGAGCCTACCATCAGATGTTTCTTTATTAGTTG TAAAATATGACAAGTACAATATATGTTACAAAAATAAGACTCAGACAGTATGCCTTAAGAAGGAAGTTGAGTTTATTTGG GTTGCTTAGCAATATATATATATATTTTTTTACCTAAAATCTCATGATTTCAGACTCATAAGCAACTCTTCTAGATTCTA CTCCTATTGTAGTGTTTTTTTTGTTGGATTTCTCAATGGATTATAATTCAATTTGCGTGGTATGCTCAACGACTATATTG TGGATTGGATTAAGAGAGAAAGATGTTATTTTAATCGTAAAATTGGATACTCTGGTTGCTTGTAGAAG
CDS sequence (LotjaGi4g1v0042500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCGATTTGGATTGTGCGCATAACAAGATGATGACGAGCCTGAATATTGTAAGAACCACACCTCTTTGTGTTTCTAC CAAATCCATTTTCTCGAACCTTCTTCTTTCTCATTCCACATCTCACTTCACCGTTTTCCCTTCAAACCCTATCATCACTC CCTCCTCCATTTCCATTCGTCATCAGCAGCGGAAGCGTGGTTTCCGTGGTGGTGTTGTTGTAGCCATGGCTGCACCTCAG AAATCGGAAGATGAGTGGCGTGCTGTTCTCTCCCCTGAGCAGTTTCGGATTCTCAGGCAGAAGGGCACTGAGTACCCTGG AACAGGAGAATATGACAAGTTCTTTGCTGAAGGAGTCTACAGATGTGCAGGTTGCGAGACTCCTCTCTACCGGTCGACAA CAAAATTCAATTCTGGTTGTGGGTGGCCGGCCTTCTATGAGGGTCTTCCTGGAGCCATATACCGCAATCCGGACCCTGAT GGAAGGAGGATAGAAATAACATGTGCTGCTTGTGGGGGACATCTAGGTCACGTATTTAAGGGTGAAGGATTTCCAACTCC CACAGATGAACGGCATTGCGTCAATAGTATTTCACTGAAATTTGTACCGGCGAATACTTAG
Protein sequence (LotjaGi4g1v0042500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDLDCAHNKMMTSLNIVRTTPLCVSTKSIFSNLLLSHSTSHFTVFPSNPIITPSSISIRHQQRKRGFRGGVVVAMAAPQ KSEDEWRAVLSPEQFRILRQKGTEYPGTGEYDKFFAEGVYRCAGCETPLYRSTTKFNSGCGWPAFYEGLPGAIYRNPDPD GRRIEITCAACGGHLGHVFKGEGFPTPTDERHCVNSISLKFVPANT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 28 | 205 | 178 | 7.2E-100 | – | |
| PANTHER | 28 | 205 | 178 | 7.2E-100 | ||
| Gene3D | 65 | 206 | 142 | 2.9E-51 | – | |
| SUPERFAMILY | 80 | 205 | 126 | 6.28E-50 | ||
| TIGRFAM | 81 | 205 | 125 | 3.9E-40 | ||
| ProSiteProfiles | 83 | 204 | 122 | 66.178 | ||
| Pfam | 85 | 203 | 119 | 8.6E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to oxidative stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. | ||
| Molecular function | Oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces disulfide. | ||
| Biological process | Protein repair | The process of restoring a protein to its original state after damage by such things as oxidation or spontaneous decomposition of residues. | ||
| Molecular function | Peptide-methionine (R)-S-oxide reductase activity | Catalysis of the reaction: peptide-L-methionine + H(2)O + thioredoxin disulfide = peptide-L-methionine (R)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the R enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0042500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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