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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0046300 |
| Transcript ID | LotjaGi4g1v0046300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G55890.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890, mitochondrial; TrEMBL-Plants: tr|V7CPQ5|V7CPQ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0046300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5422360..5424233) extracted from Lotus japonicus Gifu genome v1.2.
GTAGGGTGACACACTCGTTAGTTACTTACTTGTGTTCCTCATTCATTTCGAAGGCAAAGAGAACACCACATCATGTATCG CGTTCTTCACCGCACCCTCTGTACCGCCACACAACCCGCCGCCACCACCACGGCCGCCGCCGCCACAACCAGCATCAAGT CACTCTCGCAGGACCTGTACAAGGAAGTGAACTTGAGGAAACTGGTGGACAAGTTCAAGAAAGCTTGCGATGTTGACCGT TTCCGAACCAAAACCGGCATCTACGAGGACACGGTTCGCCGCCTCGCCGGCGCCAAACAGTTCCGGGGAGTAATCGACAT CCTCGAGCATCAGAAGCAGTATTCCGACTTCTCCAAAGAAGGGTTCTCTGCGCGCCTCATCACTCTCTACGGCAAATCCG GCATGCCAAAGCGCGCGCGCCAGATGTTCGACGAAATGCCTGAGCGAAACTGTACCCGTACAGTGCTATCTTTCAATGCC CTTTTGGCTGCTTACCTTCACTCCAAGCAGTACCGTGTCGTTGAGCGCATTTTCAAGGAGGTTCCTGGTGAGATTTCTGT GAAACCTGATTTGGTGTCTTACAATACTGTTATTAAGGCGTTCTGTAAGAGTAAGGTGTTCGAATCCGCGGTTTCGATGC TTGAGGAGATGGAGAAGAATGGTGTGAGCCCTGATTTGATCACGTTTAACACTCTGCTTGATGGGTTGTACGCTGAGGGT CGTTTTGAGGAAGGAGAGAAACTGTGGGGACAAATGGGTGGGAAGAATCTTTCTCCTGATATCAGGAGTTACAATGCCAG GTTGTTGGGATTGGCTGTGGAGAAGAAAACGGGTGAAGCTGTTGAGTTTCTTCAGGAAATGGAGAAGAAGGATGTCAAGC CTGATCTTTTTAGCTTGAATGCTATTATCAAGGGTTTTGTGAATGAGGGTAATTTGGACGAAGCGAAGAAGTGGTTTGGC GAAATAGAGAAATCTGAGAATGACCCTGATAAGAACACTTTTGCAACTCTTGTTCCCTTCCTGTGTGAGAAGGGTGATTT GAAGACAGCCATTGATGTGGTCAAGGAGATATTCAACACTAGGTGTCGTGTAGGTGTGCCGTTGCTGCAGCTTGTTGTGG ATAAACTGGTGAGTGAGTCCATGCTTTCCGAGGCGAAGGAGATTGTGGAACTAGGGAAAACCAACAGGTACTGTCACTAT AAGCTAGATTTGCCTACGGAAGAGAAGAGTGAGTAGCTTCTCGTGTCTTTTAGTTATCTTGCACTTTTGATGTTGTTGTC ATAATGATGGATATAGGCAATTGCCTCCAGGAATGGATTTTGTTCGGCATTCTGCGCTTTGTAACTAACTTATTGGCTGA AAATAGCATTTGCAATCTCATTGCACTGGTTCTTTTAGCTGATTAAATACTCGCCCTTAAATCCACCCCCAACAAAGAAT GAGTTTCTGCTTACTCTTATGATCTTGTGTTTAATAATCTTACATTATTTATATCAATTATAGGGTATTCAGGGGTGTAA ATCTGGTCATGGATGGTAATAATATATCTAGTATAATTTATTTAGTCTGTTATGGCGTCAGTAAACTCTGCTCTTTGCAG TGCGCCAAAACCCTCCATTCTTTCTATTCCATAGCTGATTAATACCCACCTTCTTCTAGTCTTTATTCACAGATTTATCC CAAAACATATCCCACCCAAGTTACTTTCAACTGAATGAAAATCTTCGTTTGTCTTTTTTCACCACCTTCTCCACATAGTT CCAATTACCATTCATGGGCTTATTCAAAGAAAATGACACTTATCCCTTAGAATAAGCTTGGATGCTGTGTGCAAGAATGT AGGAAGTTAGATGTGTAAGTTAGGTTTGCATTAT
CDS sequence (LotjaGi4g1v0046300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCGCGTTCTTCACCGCACCCTCTGTACCGCCACACAACCCGCCGCCACCACCACGGCCGCCGCCGCCACAACCAG CATCAAGTCACTCTCGCAGGACCTGTACAAGGAAGTGAACTTGAGGAAACTGGTGGACAAGTTCAAGAAAGCTTGCGATG TTGACCGTTTCCGAACCAAAACCGGCATCTACGAGGACACGGTTCGCCGCCTCGCCGGCGCCAAACAGTTCCGGGGAGTA ATCGACATCCTCGAGCATCAGAAGCAGTATTCCGACTTCTCCAAAGAAGGGTTCTCTGCGCGCCTCATCACTCTCTACGG CAAATCCGGCATGCCAAAGCGCGCGCGCCAGATGTTCGACGAAATGCCTGAGCGAAACTGTACCCGTACAGTGCTATCTT TCAATGCCCTTTTGGCTGCTTACCTTCACTCCAAGCAGTACCGTGTCGTTGAGCGCATTTTCAAGGAGGTTCCTGGTGAG ATTTCTGTGAAACCTGATTTGGTGTCTTACAATACTGTTATTAAGGCGTTCTGTAAGAGTAAGGTGTTCGAATCCGCGGT TTCGATGCTTGAGGAGATGGAGAAGAATGGTGTGAGCCCTGATTTGATCACGTTTAACACTCTGCTTGATGGGTTGTACG CTGAGGGTCGTTTTGAGGAAGGAGAGAAACTGTGGGGACAAATGGGTGGGAAGAATCTTTCTCCTGATATCAGGAGTTAC AATGCCAGGTTGTTGGGATTGGCTGTGGAGAAGAAAACGGGTGAAGCTGTTGAGTTTCTTCAGGAAATGGAGAAGAAGGA TGTCAAGCCTGATCTTTTTAGCTTGAATGCTATTATCAAGGGTTTTGTGAATGAGGGTAATTTGGACGAAGCGAAGAAGT GGTTTGGCGAAATAGAGAAATCTGAGAATGACCCTGATAAGAACACTTTTGCAACTCTTGTTCCCTTCCTGTGTGAGAAG GGTGATTTGAAGACAGCCATTGATGTGGTCAAGGAGATATTCAACACTAGGTGTCGTGTAGGTGTGCCGTTGCTGCAGCT TGTTGTGGATAAACTGGTGAGTGAGTCCATGCTTTCCGAGGCGAAGGAGATTGTGGAACTAGGGAAAACCAACAGGTACT GTCACTATAAGCTAGATTTGCCTACGGAAGAGAAGAGTGAGTAG
Protein sequence (LotjaGi4g1v0046300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYRVLHRTLCTATQPAATTTAAAATTSIKSLSQDLYKEVNLRKLVDKFKKACDVDRFRTKTGIYEDTVRRLAGAKQFRGV IDILEHQKQYSDFSKEGFSARLITLYGKSGMPKRARQMFDEMPERNCTRTVLSFNALLAAYLHSKQYRVVERIFKEVPGE ISVKPDLVSYNTVIKAFCKSKVFESAVSMLEEMEKNGVSPDLITFNTLLDGLYAEGRFEEGEKLWGQMGGKNLSPDIRSY NARLLGLAVEKKTGEAVEFLQEMEKKDVKPDLFSLNAIIKGFVNEGNLDEAKKWFGEIEKSENDPDKNTFATLVPFLCEK GDLKTAIDVVKEIFNTRCRVGVPLLQLVVDKLVSESMLSEAKEIVELGKTNRYCHYKLDLPTEEKSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| PANTHER | 13 | 375 | 363 | 3.7E-137 | – | |
| PANTHER | 13 | 375 | 363 | 3.7E-137 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 387 | 364 | - | – | |
| ProSiteProfiles | 95 | 129 | 35 | 7.936 | ||
| Gene3D | 95 | 250 | 156 | 3.4E-38 | ||
| TIGRFAM | 102 | 129 | 28 | 6.2E-5 | ||
| Pfam | 102 | 127 | 26 | 7.6E-5 | ||
| ProSiteProfiles | 130 | 160 | 31 | 6.665 | ||
| Pfam | 133 | 156 | 24 | 1.2 | ||
| Pfam | 165 | 212 | 48 | 1.3E-16 | ||
| ProSiteProfiles | 166 | 200 | 35 | 13.34 | ||
| TIGRFAM | 168 | 201 | 34 | 1.4E-10 | ||
| ProSiteProfiles | 201 | 235 | 35 | 11.444 | ||
| TIGRFAM | 203 | 237 | 35 | 1.3E-6 | ||
| ProSiteProfiles | 236 | 270 | 35 | 10.095 | ||
| Pfam | 239 | 267 | 29 | 0.039 | ||
| TIGRFAM | 239 | 271 | 33 | 1.8E-4 | ||
| Gene3D | 251 | 370 | 120 | 1.9E-18 | ||
| Pfam | 270 | 318 | 49 | 6.0E-8 | ||
| ProSiteProfiles | 271 | 305 | 35 | 10.249 | ||
| TIGRFAM | 274 | 306 | 33 | 8.9E-5 | ||
| ProSiteProfiles | 306 | 340 | 35 | 7.826 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0046300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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