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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0046800 |
| Transcript ID | LotjaGi4g1v0046800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT4G21350.1 plant U-box 8; Swiss-Prot: sp|O81902|PUB8_ARATH U-box domain-containing protein 8; TrEMBL-Plants: tr|A0A072UQ17|A0A072UQ17_MEDTR Plant U-box protein; Found in the gene: LotjaGi4g1v0046800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5639803..5643076) extracted from Lotus japonicus Gifu genome v1.2.
TCACCAACAAATTTTACTTGACATCACAATATTTCTTCCACACTTAACCACCTGCCTTCCAAAATCTAACTCAACATTTT TAACCCTCACTTGTGAACATAGATCGCAAATTAGGAATCACCATATCACATCTTTCAATGAAATCTAAAAGGCAAAGATT TTGTGGACTTATGGATCACATATTTAAATAAATTATTGGCTAAATTATGTCACTTGGTGGAAATTACATCATTCAACCGA GGGCACTATGATCACAAAACTCCAACCCCCTGATGAAGCTAAAAACAATCAATGGCGGAACAAAACAAACCACAGCCTCC ATTTTAGCTTCTCAGAAAACCCAAAAACCTCGTAAACCCTAACACTCACCTTAACCAAAATCGAAGCTTCTTCGTTTTGT TCTAGGGTTTGGTAATGGCTTCTCATCTTCCTGATTACTTCAAATGTCCAATTTCTCTTGAAATAATGTCGGACCCTGTG ATCCTCTGTTCCGGTCACACGTTCGACCGCGCCTCCATCAAACGGTGGTTAGACGCCGGCCACCGTACATGTCCAATTAC CAAACTACCCTTACCGGAAACCCCTTTACTCATCCCTAACCACGCTTTACGAAGCTTGATATCTAACTACACTCTCCTCT CTCCTCTTCACCCCCAAATTTCACACCCCGAAACCCTAATTTCCACTCTCTCTTCTCCCTCTTCCCCCGCCGATTCCAAA CTCGACTCGCTCCGCCAACTCGCTAGGTTTTCTAAACGCGACGCCGCTCTCCGCCGCCGGCTTGCCGACTCCGGCGCGGT GTCCGCAGTTCTCTCCGTTCTCGATGACTGTGCGTCAGGTACTGGCAGCGCTGCCGTGCAGGAGAAGGCGCTCTCGCTGC TTCTCAGCATCAGCCTTGACGACGACAGTAAGGTTGGGCTTGTTGCGGAGGGTGCCGTGGCGCGTGTTGTTGACGTTCTG CTCCGAGGTGATTCGTCTGATTGTCGCGCGGTGGCGGCTACGGTGGTGACGAGCCTTGCGGTTGTGGAGGTGAATAAGGC GACGATCGGGGCGTTTCCCGGGGCAATTGGAGGTTTAGTGGCGATTCTCCGTGATGGGAAGGGGAGGGAGAGGAAGGAGG CTGCTACGGCGCTGTTTGCGCTGTGTTCTTTTCCGGGTAACCGGAGGAGGGCGGTGGATTGTGGCGCGGTGCCGGTTCTG CTGTTGAGTGTGGATTCTGGGCTTGAAAGGGGTGTGGAGGTTATTGGTGTTTTGGCGAAGTGTAAAGAAGGGAGGGAGCA AATGGAAAGTTATCGGAGGTGTGTGCAGATTCTGGTTAGTGTGGTGAGGAATGGAAGCTCGAGAGGGATTCAGTATGCGT TGTTAGCACTCGCTTCGCTTTGCTTTAACAGCCAGCAAATGCTTCTGATGGCACTGGAACTAGAGGCTTTGGAACTTTCT GTTGGGTTGGTGGACGATGATAATGAGAAGGTGAGGAGGAATGCCTCCAATTTGGTTCGGGTTCTGCGCGGTGGCGGCAA CCAGCTTCGGGGGAGTTCATGATGGGAATTGGAAAGAGTCAGAAGATGTGTTTTTTCTCTCCTCTGTGGAGGTGAGTTGG TCTTGCTTTTTGGGTTTGATTGATTCTGCCTTGTTGGGTAGGTCCTTTGTATAAAATGAAAAGAAGATGAAATTTTTGTT GTGAATGTGATAGGGTTCTTTTGTATGTTGTTGTATATTGAATAATGATGATGGGCTGCTAGCTAGCTCTCTGTTGTTAG CTTAGTTGTTATAATGGAAAAAGTTGGTCCTTTGAATTGTATTGCTTCATAATGATGATGGGCTGCTAGCTAGCTCTCTG TTGTTAGCTCTCTGGGTTAACACATTACATCCTGATTTTTGGTTTTAAAAGTTGTTTTCCAGAAATGTCTTTCCCTTATA TATTGATGTAGTAACACAATTAGAAAAGCTCTGATGAAATTTTAGTTTCAATGTATAGATGGCTCAGGTTTGAATCAGTT TCATTCATAACCCTTTGGATGAAAGAAAAGAAATTTAAAGATGAACTTTTTAAATTTGAAATGAAGATAAATTTCGTAGA GTTGGTGCTGAATTTTTTGTTTCTAGGTTTCTATTTATTCCCTACTTTTCTCTTCAACTAAACAAAAGAACATTTCAAAC TAGGAAGGTTTTCCTTCCTCCTTATGTTCTGTCTTAACCCAAACAAGTGAGCATTTGAAGACATTTAAGAATAAAAATAA AAACTTACATGAAAGTGCAGTCAAATTTGACCAGAAGGGCCTAAAACTTACATCAAAATTTTCTTTTGCTTGTGAAGTAG GCTTTACCTGGAATCCTGGATGATATGGACTTGTAAGTAAGTCTTCTGTTCACTTTTGACTGTTCTAATCTATGTAGCAA TAAGGCACTATTCGTGCAAGTAAAACCTCTTGTTATCTTGAGTTGTTACACATATGTACAGTTCAAGCATATAGTTTTAT ATCCACTGTTACTGTGTGACATATTTCTACATAGACTTCGAATTGTTCTGGCATATAAACATGGGTGAATGAAACGTCAC AAATCCATACCGTACAGTTAATGCTTTATTCTTAACGATTTTAAGATGCCAAATGATTAATGTTTGCATGTTCAAGAACA AATGACAATGTTGGCCTACCAATGTGGGAAAATATGTTTTAATATGTCATGATGTCTGTAAATGTCAATGCTGCAGTGGA AGTTTTGATTTTGACCAAAGAAATCTGTAAGTGACAACTTGCTTGGACACGGGTTTATTAAAGCTTATCTACTAGAAAAT GCACTAAATAAGTTCGAATAAGTGCTCTTTGGTTTGCATCCAAACGAGTAGATATTGAGAATGCCAGCATTATACGGGTA TATTGGTCGAATAACTTGCATCGTTCCTTGGATCTGGGCATGAAGGGTTGTACGCTTGCACTTGTTCTAGATGTACTTCA AACTAGTGTTTCTTTTTAGATGGTTGCTTATATTGAAAGTGAGAGATATGATGTTTGATCTGATAGGAAAAGAAGAATAT GAGAAGAGAAAGTGAATGGAAGAGAAAATAGAGGTGTGAATGAATAACTTCAGAAATTGTTCGCTCCCTTTCTGAATGAA TATTTGGCTATTGTGTTACTGTTTGGACTGTAACTTTTAAGGAACAGATTGATTGTTTACTTTCAATATGGGTTAGCCCC TTGAAATGAGAGGGGACGGATGTTTTAATCTGAAGCATTTTTCTACATTTTCTTTATTCTTCACCGGATATGTT
CDS sequence (LotjaGi4g1v0046800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCATCTTCCTGATTACTTCAAATGTCCAATTTCTCTTGAAATAATGTCGGACCCTGTGATCCTCTGTTCCGG TCACACGTTCGACCGCGCCTCCATCAAACGGTGGTTAGACGCCGGCCACCGTACATGTCCAATTACCAAACTACCCTTAC CGGAAACCCCTTTACTCATCCCTAACCACGCTTTACGAAGCTTGATATCTAACTACACTCTCCTCTCTCCTCTTCACCCC CAAATTTCACACCCCGAAACCCTAATTTCCACTCTCTCTTCTCCCTCTTCCCCCGCCGATTCCAAACTCGACTCGCTCCG CCAACTCGCTAGGTTTTCTAAACGCGACGCCGCTCTCCGCCGCCGGCTTGCCGACTCCGGCGCGGTGTCCGCAGTTCTCT CCGTTCTCGATGACTGTGCGTCAGGTACTGGCAGCGCTGCCGTGCAGGAGAAGGCGCTCTCGCTGCTTCTCAGCATCAGC CTTGACGACGACAGTAAGGTTGGGCTTGTTGCGGAGGGTGCCGTGGCGCGTGTTGTTGACGTTCTGCTCCGAGGTGATTC GTCTGATTGTCGCGCGGTGGCGGCTACGGTGGTGACGAGCCTTGCGGTTGTGGAGGTGAATAAGGCGACGATCGGGGCGT TTCCCGGGGCAATTGGAGGTTTAGTGGCGATTCTCCGTGATGGGAAGGGGAGGGAGAGGAAGGAGGCTGCTACGGCGCTG TTTGCGCTGTGTTCTTTTCCGGGTAACCGGAGGAGGGCGGTGGATTGTGGCGCGGTGCCGGTTCTGCTGTTGAGTGTGGA TTCTGGGCTTGAAAGGGGTGTGGAGGTTATTGGTGTTTTGGCGAAGTGTAAAGAAGGGAGGGAGCAAATGGAAAGTTATC GGAGGTGTGTGCAGATTCTGGTTAGTGTGGTGAGGAATGGAAGCTCGAGAGGGATTCAGTATGCGTTGTTAGCACTCGCT TCGCTTTGCTTTAACAGCCAGCAAATGCTTCTGATGGCACTGGAACTAGAGGCTTTGGAACTTTCTGTTGGGTTGGTGGA CGATGATAATGAGAAGGTGAGGAGGAATGCCTCCAATTTGGTTCGGGTTCTGCGCGGTGGCGGCAACCAGCTTCGGGGGA GTTCATGA
Protein sequence (LotjaGi4g1v0046800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASHLPDYFKCPISLEIMSDPVILCSGHTFDRASIKRWLDAGHRTCPITKLPLPETPLLIPNHALRSLISNYTLLSPLHP QISHPETLISTLSSPSSPADSKLDSLRQLARFSKRDAALRRRLADSGAVSAVLSVLDDCASGTGSAAVQEKALSLLLSIS LDDDSKVGLVAEGAVARVVDVLLRGDSSDCRAVAATVVTSLAVVEVNKATIGAFPGAIGGLVAILRDGKGRERKEAATAL FALCSFPGNRRRAVDCGAVPVLLLSVDSGLERGVEVIGVLAKCKEGREQMESYRRCVQILVSVVRNGSSRGIQYALLALA SLCFNSQQMLLMALELEALELSVGLVDDDNEKVRRNASNLVRVLRGGGNQLRGSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 73 | 72 | 5.2E-27 | ||
| PANTHER | 3 | 366 | 364 | 1.3E-162 | – | |
| PANTHER | 3 | 366 | 364 | 1.3E-162 | – | |
| SUPERFAMILY | 4 | 73 | 70 | 4.71E-26 | – | |
| ProSiteProfiles | 4 | 79 | 76 | 35.632 | ||
| Pfam | 6 | 72 | 67 | 2.5E-20 | ||
| SMART | 8 | 72 | 65 | 1.0E-31 | ||
| CDD | 9 | 50 | 42 | 3.55222E-25 | – | |
| Gene3D | 85 | 271 | 187 | 3.0E-22 | ||
| SUPERFAMILY | 86 | 364 | 279 | 9.6E-30 | ||
| SMART | 116 | 161 | 46 | 34.0 | ||
| SMART | 162 | 203 | 42 | 44.0 | ||
| Gene3D | 272 | 366 | 95 | 7.4E-8 | ||
| SMART | 283 | 324 | 42 | 70.0 | ||
| SMART | 326 | 366 | 41 | 380.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi4g1v0046800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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