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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0047400 |
| Transcript ID | LotjaGi4g1v0047400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT2G17140.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140; TrEMBL-Plants: tr|A0A0S3QZM7|A0A0S3QZM7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0047400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:5704629..5708226) extracted from Lotus japonicus Gifu genome v1.2.
TAACCGATATTGTTCTTCGTGTTCTGGGTAATGAGATAAAGGTGTTCATACTGAGGAACAATAACGGTAAATGATTTACC GATTGGTATTTTGACATCGGCAAATCATTTACCGATGGGTAATTTTGGAATAAAAAAAAAATGCTGGGGCGCGTAGCCTA AAGGGTGGGGTGCCAAACCCAAATCCCTTACAAAACCTATAAAAGGAACAAAACCGTCCATGCCTATTGATGTCTTCATT CACAGCATGTCAACTCTTGTTCTAGCAGTGTGAACCTCGTACCTCACCATTATGGATCAAACGAGGAAGCTGATGCAAGG TGTTCTGAAGAACAGCAACAACCCGAAATTGGCATGGCATCTCTTCAAGCGAATCCTCTCTTCTCCTTCCACTTCCACTT CCACTCACCACCACCACCACCTCGTCGCCACCATGGCACGCATCCTTGTCACCGCCAACATGCACCGTGAAATCGACGAC CTCCGCGAACTCATTCTCACCCAGCAACCCCACCACATTGCTCACCCTTCCCTCATTTCCTTGCTTCAAGTCCTGGCTCA ATCACCCCACCACCTCGATAAGGCTTTCTCCCTCTTCAAATCACTCAGAGCTCAATTCCCATCACCCCCGCCATCGCTTC CTTTGTACCACCACCTCCTCCGGTCAAGCCTCCACCAGAACCGCCCGCATTATGTCAAATGGTTGTACTCCGACATGGTG GAAGCTGGTGTTGACCCGCATACCTACACTTTCAATCTCCTGATTCAGTCCCTGTGTGAGTCCCGGGCTCTTGATCACGC CCGCGAACTGTTTGATAAAATGTCTGAGAAAGGGTGCCACCCAAATGAGTTCACTCTCGGGATTTTGGTTCGTGGGTTTT GTCGCGCCGGCCGGGTAAAACAGGCGTTGGAGCTTTTTAACAAGTCCTGTTGCAATGTTAACAAGGTTGTGTATAACACC CTGGTGTCTAGCTTTTGTAAAGAGGGGATGAATGATGAGGCTGAGAGGTTGGTGGAGAGGATGAGAGAGCAAGGATTTTC TCCTGATGTTGTGACCTTTAACTCTAGGATATCGGCGCTTTGTAGAGCCGGGAAAGTCCTGGAGGCGTCGAGGATTTTCA GGGATATGCAGATGGATCAAGAATTGGGACTTCCTAGGCCCAATGTGATAACTTATAACCTGATGCTTAAGGGGTTCTGT AAGCTGGGGATGATGGAGGAAGCGAGGTCTTTGGTGGATACTATGAAGAAAATTGGTTATTTTGTCACTCTGGAGAGTTA TAATACGTGGTTGTTGGGGTTGCTTCGAAATGGAAAGCTTTTGGAGGCTCGGTTGGTTCTTGATGAAATGGTGGATAAAG GTATTGAACCAAATATTTACTCTTATAACATTATGATGGATGGTCTGTGCAGGAACCATATGCTGTCAGATGCCCGAAAG TTGGTGGATGTGATGATAAGCAATGGCGTTTACCCAGATACTGTTACTTATAGCACTCTCCTTCATGGCTATTGTAGCAA AGGGAAGGTTCTTGAAGCTAAAGCTGTTCTTCATGAAATGATTAGGAATGGTTGTCATCCGAATACTTATACCTGTAACA CTTTGCTGCATAGCCTGTGGAAAGAGGGGAGAAAATTAGAAGCAGAGGAAATGCTTCAGAAGATGAACGAAAAACGCTAT CAATTAGATACTGTGACCTGCAATGTAGTGGTCAATGGTCTCTGTAGAAATGGGGAATTGGAGAAAGCAATTGAAATTGT GAGTGAGATGTGGACTAATGGAACAACATCCCTTGCTAAAGGAAACTCTTTTGCAGGTCTAGTTAATTCAATCCACAATG TATCTACCAGCTTGCCTGATGTGGTCACATATACAACCCTAATTAATGGACTTTGCAAAGTCGGGAAGCTTGAGGAAGCC AAAAAGAAATTTATTGAGATGATGGCGAAAAATTTGCACCCTGATTCTGTGACATATGATACTTTCATATGGAAATTCTG TAAAGAAGGGAAGATATCATCAGCCTTACGTGTCTTAAAGGATATGGAGAGAAATGGTTGCAGCAAGACTCTTCAAACCT ATAATTCATTGATCTTGGGCTTAGGAAGTAAAGGGCAAATATTTGAAATGTATGGATTGATGGATGAGATGAGAGAAAGA GGGATATGTCCAGATATTTGCACTTACAATAATGTAATTAGTTGTCTTTGTGAAGGAGGAAAAACAGAGGATGCTACTTC TCTTTTACATGAAATGTTGGATAAGGGCATATCTCCCAATATATCTTCCTTCAAAATACTGATTAAATCCTGCTGCAAGT CTAGTGATTTTAAAGTTGCATACGAGCTTTTTGAGGTAGCTTTGAGTGTATGTGGTCATAAAGAAGCCCTGTACAGTTTT ATGTTTAATGAATTACTTTCTGGAGGACAACTCTCGGAAGCAAAGGAGCTGTTTGAAGCTTCATTAGATAGATTTCTTCG ATTAAAGAATTTCATGTATAAAGATTTGATTGACAGACTGTGCCAGGATGAAAGGTTAGATGATGCTGATTGCCTTCTTC ATAAATTGATTGATAAAGGATACAGCTTCGACCATTCATCGTTCATGCCAGTGATTGATGGCTTAAGTAAAAGGGGAAAG AAACAACAAGCTGATGAACTAGCAAAGAAGATGATGGAATTGACTTTGGAAGATAGAACAGTCAATAGGACTTATCAAAA TGGAAATAGGATCTTTCCTGGAAAACTGGATAAGGATAATGGAAGTGAGTGGCAGGATATAATTAACAGGTATGGCTCTA TGGTGTTGAAGATAATCTTTCATTCCATTTTTGGGTTCTGTTCAACTTTAGTAAAACAAAGGTTTTTCATTACATAACTT GGGTTAAACTGTTTACTCGGTACTTTTTCCTTCTCTGATGAGCTATGAATCCTTAATTTCTAAATGTGACAACTGACAAC TAGTTCTCCTTATAAATGATCTGAGTAATTTCTTCTATAACTTTGGTACAATGATAACTCAACTACCATGTGATAGTATA GATGGGCTCATTGTTGTACCTTATTTGTTTGACAGTTTCTAACTCAACCTGGTTTATAAACACACAAGTACATCAGGACA TTTCTCCATGATTAATAGAGTTGCTTTACTGTATGATATTTAAAATTATTTGTTATTATCATTCACTTATATCTATCACA CAAAATGTAAACTTGGTCCTGCTATCATCTTTGAAATTTTGTTTGTCAAATGAGTTGTACAATGTTTATAGCTTTATAAT TTTTTTCAATCTCCATCTACTTTTGCTGCATATTCTTCGATGGTCACTAAAAATCTGTTGCCTATTACTTGACAGAGGGG GTGGCACTGGACTTGCATTGAAAACTCTGAAGCGTGTAGAGAAAGGCTGGGGTCAAGGAAGTATATCAAGTTTGCTGCCT CAGAAGAATGATTTTCTTGATTACTATGATGGCAGTGCTTAATTGTTGGATTTTTAGGGTATTTTAACTTTTTTCTTTCA ACCCCAGGTGGGGGAGAAGGGAGTAGCTGAAAGAAGAATGTAAAGGTCTGAGGTTGGACATATACAATATCTCTTTGT
CDS sequence (LotjaGi4g1v0047400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAAACGAGGAAGCTGATGCAAGGTGTTCTGAAGAACAGCAACAACCCGAAATTGGCATGGCATCTCTTCAAGCG AATCCTCTCTTCTCCTTCCACTTCCACTTCCACTCACCACCACCACCACCTCGTCGCCACCATGGCACGCATCCTTGTCA CCGCCAACATGCACCGTGAAATCGACGACCTCCGCGAACTCATTCTCACCCAGCAACCCCACCACATTGCTCACCCTTCC CTCATTTCCTTGCTTCAAGTCCTGGCTCAATCACCCCACCACCTCGATAAGGCTTTCTCCCTCTTCAAATCACTCAGAGC TCAATTCCCATCACCCCCGCCATCGCTTCCTTTGTACCACCACCTCCTCCGGTCAAGCCTCCACCAGAACCGCCCGCATT ATGTCAAATGGTTGTACTCCGACATGGTGGAAGCTGGTGTTGACCCGCATACCTACACTTTCAATCTCCTGATTCAGTCC CTGTGTGAGTCCCGGGCTCTTGATCACGCCCGCGAACTGTTTGATAAAATGTCTGAGAAAGGGTGCCACCCAAATGAGTT CACTCTCGGGATTTTGGTTCGTGGGTTTTGTCGCGCCGGCCGGGTAAAACAGGCGTTGGAGCTTTTTAACAAGTCCTGTT GCAATGTTAACAAGGTTGTGTATAACACCCTGGTGTCTAGCTTTTGTAAAGAGGGGATGAATGATGAGGCTGAGAGGTTG GTGGAGAGGATGAGAGAGCAAGGATTTTCTCCTGATGTTGTGACCTTTAACTCTAGGATATCGGCGCTTTGTAGAGCCGG GAAAGTCCTGGAGGCGTCGAGGATTTTCAGGGATATGCAGATGGATCAAGAATTGGGACTTCCTAGGCCCAATGTGATAA CTTATAACCTGATGCTTAAGGGGTTCTGTAAGCTGGGGATGATGGAGGAAGCGAGGTCTTTGGTGGATACTATGAAGAAA ATTGGTTATTTTGTCACTCTGGAGAGTTATAATACGTGGTTGTTGGGGTTGCTTCGAAATGGAAAGCTTTTGGAGGCTCG GTTGGTTCTTGATGAAATGGTGGATAAAGGTATTGAACCAAATATTTACTCTTATAACATTATGATGGATGGTCTGTGCA GGAACCATATGCTGTCAGATGCCCGAAAGTTGGTGGATGTGATGATAAGCAATGGCGTTTACCCAGATACTGTTACTTAT AGCACTCTCCTTCATGGCTATTGTAGCAAAGGGAAGGTTCTTGAAGCTAAAGCTGTTCTTCATGAAATGATTAGGAATGG TTGTCATCCGAATACTTATACCTGTAACACTTTGCTGCATAGCCTGTGGAAAGAGGGGAGAAAATTAGAAGCAGAGGAAA TGCTTCAGAAGATGAACGAAAAACGCTATCAATTAGATACTGTGACCTGCAATGTAGTGGTCAATGGTCTCTGTAGAAAT GGGGAATTGGAGAAAGCAATTGAAATTGTGAGTGAGATGTGGACTAATGGAACAACATCCCTTGCTAAAGGAAACTCTTT TGCAGGTCTAGTTAATTCAATCCACAATGTATCTACCAGCTTGCCTGATGTGGTCACATATACAACCCTAATTAATGGAC TTTGCAAAGTCGGGAAGCTTGAGGAAGCCAAAAAGAAATTTATTGAGATGATGGCGAAAAATTTGCACCCTGATTCTGTG ACATATGATACTTTCATATGGAAATTCTGTAAAGAAGGGAAGATATCATCAGCCTTACGTGTCTTAAAGGATATGGAGAG AAATGGTTGCAGCAAGACTCTTCAAACCTATAATTCATTGATCTTGGGCTTAGGAAGTAAAGGGCAAATATTTGAAATGT ATGGATTGATGGATGAGATGAGAGAAAGAGGGATATGTCCAGATATTTGCACTTACAATAATGTAATTAGTTGTCTTTGT GAAGGAGGAAAAACAGAGGATGCTACTTCTCTTTTACATGAAATGTTGGATAAGGGCATATCTCCCAATATATCTTCCTT CAAAATACTGATTAAATCCTGCTGCAAGTCTAGTGATTTTAAAGTTGCATACGAGCTTTTTGAGGTAGCTTTGAGTGTAT GTGGTCATAAAGAAGCCCTGTACAGTTTTATGTTTAATGAATTACTTTCTGGAGGACAACTCTCGGAAGCAAAGGAGCTG TTTGAAGCTTCATTAGATAGATTTCTTCGATTAAAGAATTTCATGTATAAAGATTTGATTGACAGACTGTGCCAGGATGA AAGGTTAGATGATGCTGATTGCCTTCTTCATAAATTGATTGATAAAGGATACAGCTTCGACCATTCATCGTTCATGCCAG TGATTGATGGCTTAAGTAAAAGGGGAAAGAAACAACAAGCTGATGAACTAGCAAAGAAGATGATGGAATTGACTTTGGAA GATAGAACAGTCAATAGGACTTATCAAAATGGAAATAGGATCTTTCCTGGAAAACTGGATAAGGATAATGGAAGTGAGTG GCAGGATATAATTAACAGAGGGGGTGGCACTGGACTTGCATTGAAAACTCTGAAGCGTGTAGAGAAAGGCTGGGGTCAAG GAAGTATATCAAGTTTGCTGCCTCAGAAGAATGATTTTCTTGATTACTATGATGGCAGTGCTTAA
Protein sequence (LotjaGi4g1v0047400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQTRKLMQGVLKNSNNPKLAWHLFKRILSSPSTSTSTHHHHHLVATMARILVTANMHREIDDLRELILTQQPHHIAHPS LISLLQVLAQSPHHLDKAFSLFKSLRAQFPSPPPSLPLYHHLLRSSLHQNRPHYVKWLYSDMVEAGVDPHTYTFNLLIQS LCESRALDHARELFDKMSEKGCHPNEFTLGILVRGFCRAGRVKQALELFNKSCCNVNKVVYNTLVSSFCKEGMNDEAERL VERMREQGFSPDVVTFNSRISALCRAGKVLEASRIFRDMQMDQELGLPRPNVITYNLMLKGFCKLGMMEEARSLVDTMKK IGYFVTLESYNTWLLGLLRNGKLLEARLVLDEMVDKGIEPNIYSYNIMMDGLCRNHMLSDARKLVDVMISNGVYPDTVTY STLLHGYCSKGKVLEAKAVLHEMIRNGCHPNTYTCNTLLHSLWKEGRKLEAEEMLQKMNEKRYQLDTVTCNVVVNGLCRN GELEKAIEIVSEMWTNGTTSLAKGNSFAGLVNSIHNVSTSLPDVVTYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSV TYDTFIWKFCKEGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGICPDICTYNNVISCLC EGGKTEDATSLLHEMLDKGISPNISSFKILIKSCCKSSDFKVAYELFEVALSVCGHKEALYSFMFNELLSGGQLSEAKEL FEASLDRFLRLKNFMYKDLIDRLCQDERLDDADCLLHKLIDKGYSFDHSSFMPVIDGLSKRGKKQQADELAKKMMELTLE DRTVNRTYQNGNRIFPGKLDKDNGSEWQDIINRGGGTGLALKTLKRVEKGWGQGSISSLLPQKNDFLDYYDGSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 280 | 269 | 4.5E-217 | – | |
| Gene3D | 54 | 199 | 146 | 4.5E-25 | ||
| ProSiteProfiles | 77 | 112 | 36 | 5.459 | ||
| ProSiteProfiles | 115 | 149 | 35 | 7.509 | ||
| Pfam | 149 | 198 | 50 | 4.9E-14 | ||
| ProSiteProfiles | 150 | 184 | 35 | 12.364 | ||
| TIGRFAM | 152 | 186 | 35 | 6.2E-8 | ||
| SUPERFAMILY | 161 | 367 | 207 | 6.54E-6 | – | |
| ProSiteProfiles | 185 | 215 | 31 | 8.506 | ||
| TIGRFAM | 188 | 211 | 24 | 6.9E-4 | ||
| PANTHER | 191 | 320 | 130 | 4.5E-217 | – | |
| Gene3D | 200 | 283 | 84 | 2.5E-24 | ||
| Pfam | 217 | 265 | 49 | 1.4E-13 | ||
| ProSiteProfiles | 217 | 251 | 35 | 13.91 | ||
| TIGRFAM | 219 | 253 | 35 | 1.5E-9 | ||
| ProSiteProfiles | 252 | 282 | 31 | 10.227 | ||
| TIGRFAM | 254 | 280 | 27 | 1.1E-5 | ||
| Gene3D | 284 | 355 | 72 | 1.1E-14 | ||
| PANTHER | 289 | 495 | 207 | 4.5E-217 | – | |
| Pfam | 290 | 319 | 30 | 2.3E-9 | ||
| ProSiteProfiles | 291 | 325 | 35 | 12.299 | ||
| TIGRFAM | 293 | 320 | 28 | 8.9E-7 | ||
| ProSiteProfiles | 326 | 360 | 35 | 11.115 | ||
| TIGRFAM | 329 | 362 | 34 | 4.4E-7 | ||
| Pfam | 329 | 358 | 30 | 8.9E-5 | ||
| Gene3D | 356 | 445 | 90 | 8.5E-32 | ||
| Pfam | 360 | 409 | 50 | 2.5E-16 | ||
| ProSiteProfiles | 361 | 395 | 35 | 12.332 | ||
| TIGRFAM | 363 | 397 | 35 | 1.8E-9 | ||
| ProSiteProfiles | 396 | 430 | 35 | 13.735 | ||
| TIGRFAM | 398 | 432 | 35 | 9.9E-11 | ||
| PANTHER | 416 | 587 | 172 | 4.5E-217 | – | |
| Pfam | 430 | 479 | 50 | 8.7E-10 | ||
| ProSiteProfiles | 431 | 465 | 35 | 9.964 | ||
| Gene3D | 446 | 508 | 63 | 3.3E-10 | ||
| ProSiteProfiles | 466 | 500 | 35 | 11.564 | ||
| TIGRFAM | 468 | 497 | 30 | 1.9E-7 | ||
| Gene3D | 509 | 586 | 78 | 2.4E-21 | ||
| PANTHER | 520 | 690 | 171 | 4.5E-217 | – | |
| Pfam | 522 | 570 | 49 | 1.5E-14 | ||
| ProSiteProfiles | 523 | 557 | 35 | 13.11 | ||
| TIGRFAM | 525 | 559 | 35 | 6.5E-9 | ||
| ProSiteProfiles | 558 | 592 | 35 | 11.466 | ||
| TIGRFAM | 560 | 591 | 32 | 5.8E-5 | ||
| Gene3D | 587 | 657 | 71 | 2.3E-17 | ||
| ProSiteProfiles | 593 | 627 | 35 | 11.016 | ||
| Pfam | 596 | 625 | 30 | 1.1E-5 | ||
| TIGRFAM | 596 | 629 | 34 | 2.3E-7 | ||
| Pfam | 627 | 676 | 50 | 1.6E-15 | ||
| ProSiteProfiles | 628 | 662 | 35 | 12.967 | ||
| TIGRFAM | 630 | 664 | 35 | 8.4E-10 | ||
| Gene3D | 658 | 725 | 68 | 2.0E-8 | ||
| ProSiteProfiles | 663 | 698 | 36 | 7.52 | ||
| PANTHER | 699 | 798 | 100 | 4.5E-217 | – | |
| Gene3D | 726 | 799 | 74 | 4.5E-8 | ||
| ProSiteProfiles | 732 | 766 | 35 | 7.783 | ||
| Pfam | 735 | 763 | 29 | 0.77 | ||
| ProSiteProfiles | 767 | 801 | 35 | 7.629 | ||
| Coils | 780 | 800 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0047400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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