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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0053400 |
| Transcript ID | LotjaGi4g1v0053400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G13410.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic; TrEMBL-Plants: tr|G7LGW8|G7LGW8_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi4g1v0053400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6457283..6460941) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCTACTTTCTAACACATAGTATTAATCTTCAGCCACAAAACGGAGGCTTTACAAACGAAAATAGCTACAGCTCAGAG AGTGGTAGAAGACAAGTTCATATCTCTGCTACGATCATGTAGAACTCGCGAACTCCTCCACAAGATTCAAGCCCAAATAG TGACCAATGGCCTCGAGCACAATGGTTTCGTCACGCCGAGTCTCATCAAGGCGTGCTCAAACCTGGGCGCGATGGGTCAT GCCCGGAAGGTGTTCGACAAAATGCCTGAGCCAAACACGGCCACTTGGAACGCCATGTTCAATGGGTACTCCCTCACGGA GTCCCACCGCGACGTTGTTGTCTTGTTTGCAGAGATGAACCGCGCTGCTGCGGCGCCATTGAACCACTTCACCTTGCCGA TTGTTGTGAGGTCGTGCTCGAAGGCAGGTGCCGTGAGGGAGGGGGAGCAAGTACACTGTGTGGCGGCCAAACGCGGTTTT AAGTGGAACTCGTTTCTGTGTACCGCGCTGATTGAAATGTACTCTGCCAAAGGGTCGGTTGGAGATGCTTATAAAGTGTT TGGTGAGATGCCTGAGAGGAATGTCGTTGTTTGGACTGCTATGATCAGTGCTTATATTTCGTGCGGTGACGTGGGTTCTG GGAGGCGCCTTTTGGACCTCGCGCCGGAGCGTGATGTTGTCATGTGGAGCATTGTGATTTCGGGTTACATTGAATCGGGG GATATGGTTTCTGCGAGGGAGCTTTTCGATAAGATGCCGAACCGGGATGTGATGTCGTGGAACACCTTGCTGAACGGTTA CGCGAATAGCGGGGATGTTGGGTCGTTTGAGAAGGTGTTTGAGGAAATGCCTGAGAGGAATGTGTATTCTTGGAATGTCT TGATTGGTGGCTATGCTAGGAATGGGCGCTTTTCTGATGCTTTGGAGGCTTTTAAACAGATGTTGGTTGAAGGGGATGTG GTTCCTAATGATTTCACCCTCGTCGCGGTGCTTTTGGCGTGTTCGAGATTGGGGGCTCTTGACATGGGTAAGTGGGTGCA TGTGTATGCAGAGAGCATTGGGTACAAGGGAAACATGTTTGTTGGGAATGCTTTGATTGACATGTATGCAAAATGTGGGG TTATTGAAAGTGCAGTTGATGTCTTCAATTGCTTGGATAGGAGAGATATTATTAGTTGGAACACTATGATTAATGGCTTA GCCATGCATGGTAACACAGCTGATGCCTTGAGTTTATTTGATCAAATGAAGAATTCGAGAGAACAACCAGATGGGGTCAC TTTTGTTGGAATATTATCTGCTTGTACACACATGGGATTAGTCAGAGATGGCTTCTTGTATTTCCAATCAATGGTTGATC ATTATTCAATTATACCTCAAATTGAGCATTATGGATGTATGGCTGATTTGCTGGGAAGAGCTGGGCTTCTAGACCAGGCT GTGAGTTTTGTGAGAAAGATGCCAATGGAACCGGATGCAGTTATATGGACTTCCCTACTTGGGGCATGTAGGACACACAA GAATGTTGAGATAGCAGAACTGGCTCTTCAGCATCTCATTGAACTTGAACCAAAGAACCCTGCAAACTTCGTCATGCTTT CAAACATATATAAGGATCTTGGAAGGTGGCAAGATGTTGCCAGACTGAAGATTGCAATGAGAGATACCGGGTTCAGGAAA TTGCCAGGATGTAGCGTTATTGAGTGCAATGATAGTGTGGTGGAATTCTATTCATTGGATGAGCGACATCCTGAGACAGA GAGTATCTATAGGGCATTGCGGGGATTGACTATGCTTTTAAGATTACATGGATATGTGCCAAATCTTGTGGATGTTGCTC AAGGAACTTGAATGATGGGAGATGTATTATGAGTGGATAATCAACATTTTATGATCGGGCTCAGCATCCAATAGATTCAT AAGGCCTTTGACATTGTGAAAATCATGCGGGTAAAATCACCATTAGACTGCGGTCCTGCATCTATTGTAGTCAAAATCAG TTCTGGTATATATATGAAATGTTCCATTACTGAATTGTCCTAAAAATTATTTAGTAGTCAGACATGCAATTTGGCCATGC CAGACTCCTGTATTTGAATGAGGCTTTAGAAATGCATGTCATTTTTCTCATTTGGATTTGGATGAATGTGATAGTGGCAT AAAAGGTTGCAAAAGCTGTGAACTAACAAGTTATACCCCATAATAAGATGCTGAACTAACTCATCTGTGATTAAATTGTG TTTCACTGTATTATTTACTGGAGTAGTTTCCAATGTCTCTTCCCATGTAATTCGTCTATTAATGAATACTAAAATCCTGA TTTCTTTATTACAAACTCAGTGCTGAACTTTGGCTGTTGTGCCAAGATGAGTAACATTTTTAATGTTTATTTGTAGGGCG GAGACTAGGGTGAATCACACCCCATTCGGTTCACCGTGATGTACCATCAATTATTTATACCATTGGATTTAACAATAAAC AATTGAACGACCTAGACTGTTGAAGGGCAATCAGGTTTGAAGAGTTGTTTTGAATTTTGCAATTTGGTCCTTAGATTTAG ATTACCAACTTGTTTCTAGCAAATGAGTGGCAATGGCTGATGAGACTAGTGAAAGAGAATTCCGGGGACTACTGCTCCTC TGCTGGCGTTGTTGTCTAACACTGTAGAGTAACTTTTACCCCTCTTTCATTGTTCCATTTTTTTGAGATCATTCACCTCA ACTAAGTCAGATTTGTTTGGGGATTCAAATATTTGGATGAATTGCAATGTAAACCTTACAAGAGGAGGGTCATTCTTAGT TATTGCTGCCGGCTGAAAAGGGTATTTTGAAACCTCTAACACACATCTAAATTCTTTCTCTTTGTTTACTTTCGCATTTA CGATGAATACAACAACTCAATTGTCTTTCACACATTCATTCTTCAGTTTGGGTATGACCTTCAAAGTATTGCAATTTATG TACTCTCATTTCTGTATCAGCTTAATCTGACCCTGTTTGTTGCTGTTTTGTGGGGAAAAAAGGAGACCAGAAAAATTGGA ACAACAAAACCATGGCGGCGCTGTTGTAGGGAAATAAAATGGGTATTGCGACGGGCTCGTCGGCTTGGGAATGTTGACAG AGGAATGAAAGAGTGGTGTCTGGTTTAGTGGTCCCTCATCGCAGCCACCACACCCTACACGGGGGACACTAAACAGGAGG CAGCCGCACTGCCTTTCGCCGGAGACATCTAAACCTTGGAAGAAGAAGGAAATACGAGAAAAAAAATGTACCGCGGTGGT TATTTTTCACCGAAGATAACACCCTTGCTTTGCTAGGTCAAAAAGTTAAGCAGAAGGAGGGAATAAGAAAAAGTTTGCTT ATGGAACCAATGTGGTATTTGGCTACTTCTGGCTCTGTCAGTTCCCTCTTCACGGAATATGTTGAGTATGGCTCATAGGC ATAGGCAGTGTCATTGGGGCAATGGGCCGGGGTACGGTTTAGGGGTATTATTGTAAACTAGATCGTTAGTATCCCTATAT AAGCTTGTAACATTGTAACCCTAATTATTGTATTCATAAGAGAATCAATAAACGGAACTATAGCTACTCTATAGTCGCAG AGGTAGGCAATTTGACCAAACTGCGTGAACAAAACTTTCGTGTGTTTCTCTCTACTCTT
CDS sequence (LotjaGi4g1v0053400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCATGCCCGGAAGGTGTTCGACAAAATGCCTGAGCCAAACACGGCCACTTGGAACGCCATGTTCAATGGGTACTC CCTCACGGAGTCCCACCGCGACGTTGTTGTCTTGTTTGCAGAGATGAACCGCGCTGCTGCGGCGCCATTGAACCACTTCA CCTTGCCGATTGTTGTGAGGTCGTGCTCGAAGGCAGGTGCCGTGAGGGAGGGGGAGCAAGTACACTGTGTGGCGGCCAAA CGCGGTTTTAAGTGGAACTCGTTTCTGTGTACCGCGCTGATTGAAATGTACTCTGCCAAAGGGTCGGTTGGAGATGCTTA TAAAGTGTTTGGTGAGATGCCTGAGAGGAATGTCGTTGTTTGGACTGCTATGATCAGTGCTTATATTTCGTGCGGTGACG TGGGTTCTGGGAGGCGCCTTTTGGACCTCGCGCCGGAGCGTGATGTTGTCATGTGGAGCATTGTGATTTCGGGTTACATT GAATCGGGGGATATGGTTTCTGCGAGGGAGCTTTTCGATAAGATGCCGAACCGGGATGTGATGTCGTGGAACACCTTGCT GAACGGTTACGCGAATAGCGGGGATGTTGGGTCGTTTGAGAAGGTGTTTGAGGAAATGCCTGAGAGGAATGTGTATTCTT GGAATGTCTTGATTGGTGGCTATGCTAGGAATGGGCGCTTTTCTGATGCTTTGGAGGCTTTTAAACAGATGTTGGTTGAA GGGGATGTGGTTCCTAATGATTTCACCCTCGTCGCGGTGCTTTTGGCGTGTTCGAGATTGGGGGCTCTTGACATGGGTAA GTGGGTGCATGTGTATGCAGAGAGCATTGGGTACAAGGGAAACATGTTTGTTGGGAATGCTTTGATTGACATGTATGCAA AATGTGGGGTTATTGAAAGTGCAGTTGATGTCTTCAATTGCTTGGATAGGAGAGATATTATTAGTTGGAACACTATGATT AATGGCTTAGCCATGCATGGTAACACAGCTGATGCCTTGAGTTTATTTGATCAAATGAAGAATTCGAGAGAACAACCAGA TGGGGTCACTTTTGTTGGAATATTATCTGCTTGTACACACATGGGATTAGTCAGAGATGGCTTCTTGTATTTCCAATCAA TGGTTGATCATTATTCAATTATACCTCAAATTGAGCATTATGGATGTATGGCTGATTTGCTGGGAAGAGCTGGGCTTCTA GACCAGGCTGTGAGTTTTGTGAGAAAGATGCCAATGGAACCGGATGCAGTTATATGGACTTCCCTACTTGGGGCATGTAG GACACACAAGAATGTTGAGATAGCAGAACTGGCTCTTCAGCATCTCATTGAACTTGAACCAAAGAACCCTGCAAACTTCG TCATGCTTTCAAACATATATAAGGATCTTGGAAGGTGGCAAGATGTTGCCAGACTGAAGATTGCAATGAGAGATACCGGG TTCAGGAAATTGCCAGGATGTAGCGTTATTGAGTGCAATGATAGTGTGGTGGAATTCTATTCATTGGATGAGCGACATCC TGAGACAGAGAGTATCTATAGGGCATTGCGGGGATTGACTATGCTTTTAAGATTACATGGATATGTGCCAAATCTTGTGG ATGTTGCTCAAGGAACTTGA
Protein sequence (LotjaGi4g1v0053400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHARKVFDKMPEPNTATWNAMFNGYSLTESHRDVVVLFAEMNRAAAAPLNHFTLPIVVRSCSKAGAVREGEQVHCVAAK RGFKWNSFLCTALIEMYSAKGSVGDAYKVFGEMPERNVVVWTAMISAYISCGDVGSGRRLLDLAPERDVVMWSIVISGYI ESGDMVSARELFDKMPNRDVMSWNTLLNGYANSGDVGSFEKVFEEMPERNVYSWNVLIGGYARNGRFSDALEAFKQMLVE GDVVPNDFTLVAVLLACSRLGALDMGKWVHVYAESIGYKGNMFVGNALIDMYAKCGVIESAVDVFNCLDRRDIISWNTMI NGLAMHGNTADALSLFDQMKNSREQPDGVTFVGILSACTHMGLVRDGFLYFQSMVDHYSIIPQIEHYGCMADLLGRAGLL DQAVSFVRKMPMEPDAVIWTSLLGACRTHKNVEIAELALQHLIELEPKNPANFVMLSNIYKDLGRWQDVARLKIAMRDTG FRKLPGCSVIECNDSVVEFYSLDERHPETESIYRALRGLTMLLRLHGYVPNLVDVAQGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 103 | 103 | 5.1E-15 | ||
| PANTHER | 4 | 134 | 131 | 3.6E-108 | – | |
| ProSiteProfiles | 15 | 49 | 35 | 8.813 | ||
| Pfam | 18 | 44 | 27 | 0.034 | ||
| ProSiteProfiles | 51 | 85 | 35 | 7.125 | ||
| ProSiteProfiles | 86 | 120 | 35 | 9.624 | ||
| TIGRFAM | 89 | 119 | 31 | 5.4E-4 | ||
| Pfam | 90 | 118 | 29 | 0.0022 | ||
| Gene3D | 105 | 179 | 75 | 9.8E-15 | ||
| Pfam | 119 | 143 | 25 | 0.038 | ||
| ProSiteProfiles | 148 | 182 | 35 | 10.468 | ||
| TIGRFAM | 150 | 179 | 30 | 4.8E-5 | ||
| Pfam | 150 | 179 | 30 | 1.5E-5 | ||
| Gene3D | 180 | 281 | 102 | 3.1E-22 | ||
| TIGRFAM | 182 | 211 | 30 | 3.2E-6 | ||
| PANTHER | 183 | 267 | 85 | 3.6E-108 | – | |
| ProSiteProfiles | 183 | 209 | 27 | 6.993 | ||
| SUPERFAMILY | 209 | 468 | 260 | 9.34E-6 | ||
| ProSiteProfiles | 210 | 244 | 35 | 11.685 | ||
| Pfam | 210 | 257 | 48 | 4.6E-8 | ||
| TIGRFAM | 212 | 246 | 35 | 8.8E-9 | ||
| ProSiteProfiles | 246 | 280 | 35 | 5.601 | ||
| PANTHER | 264 | 476 | 213 | 3.6E-108 | – | |
| ProSiteProfiles | 281 | 311 | 31 | 7.333 | ||
| Gene3D | 284 | 489 | 206 | 1.8E-37 | ||
| ProSiteProfiles | 312 | 346 | 35 | 11.992 | ||
| Pfam | 312 | 358 | 47 | 4.7E-11 | ||
| TIGRFAM | 314 | 347 | 34 | 8.0E-9 | ||
| ProSiteProfiles | 347 | 377 | 31 | 6.599 | ||
| ProSiteProfiles | 383 | 413 | 31 | 6.478 | ||
| Pfam | 386 | 411 | 26 | 0.29 | ||
| ProSiteProfiles | 415 | 445 | 31 | 5.842 | ||
| ProSiteProfiles | 449 | 483 | 35 | 6.467 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0053400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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