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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0056100 |
| Transcript ID | LotjaGi4g1v0056100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G33760.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760; TrEMBL-Plants: tr|I1M0A9|I1M0A9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0056100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:6739475..6741238) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGTGGAAAGAAAAGCATAGAGAAGAAGGACCAACAAAATCTGCAGAATACCAAGCAGTGGTACGTGCAGGCCCACA CGTGCGTCCCCTCCAGCAAGCTCACGCTCATCTCGTCGTCACCGGCTGCCACCGCAGCCGCGCCCTCATCACCAAGCTCC TCACACTCTCCTGCGCCGCCGGCTCCATCGCCTACACGCGCCGCCTCCTACGCGCCGCCATCAACCCCGACTCCTTCCTC TTCAACTCCCTCCTCAAAGCCACCTCCGCCTCCGGCTTCTCTCTCGACACCATCCTCTTCTACAGTCGCATGCTCCACTC CCGCATTGCACCTTCCTCTTACACTTTCACCTCCGTCTTCAAGGCCTGCGCTCACCTTTCCGCTCTCCGAGTTGGTACCG TTGTCCATTCCCACGTTTTCGTTTCTGGGTATGGCTCCAATCCCTTTGTCCAAGCCGCAATCGTCACGTTCTACGCGAAA TCTAGTGCGTTACCGGTTGCACGCAAGGTGTTCGATGAAATGCCTCAACGAAGTGTCGTTGCTTGGAACTCCATGATTTC GGGTTACGAGCAAAATGGGCTTCCCAATGAAGCGGTTGCGCTGTTTCGCGAGATGTGTGAACTCGGGGTTCGTCCTGATT CCGCGAGTTTTGTTTGTGTGTTATCGGCTTGCTCTCAATTGGGGTCTCTTGATTTGGGGTGTTGGGTGCATGACTGTGTT GTTAGCAGTGGGGTTCATGTTAATGTCGTTCTCGCTACCTCGTTGATAAACATGTTTTCGCGGTGTGGTGATGTGAGCAG AGCGCGAGCGGTTTTTGATTCGATGAATGAAGGGAATGTTATTGCGTGGACCGCTATGATATCCGGGTATGGTATGCATG GGCATGGTGTTCAAGCAATGGAGCTTTTTCATGATATGAAAGCACGAGGGCTAGCTCCTAACAGGGTCACTTTTGTTGCT GTCTTATCTGCATGTGCTCATGCAGGGCTAGTACATGAAGGGCGCCAAGTGTTTGCAAGCATGGGACATGAGTATGGTGT AGTTCCAGGAGTGGAGCACCATGTTTGTATGGTTGATATGCTTGGGAGGGCTGGGTTGCTCTGTGAAGCATACCAATTCA TCAAAGAACTTAGTCCTGAGGAGCTTGTTCCGGCGGTGTGGACCGCCATGCTTGGGGCTTGCAAGATGCATAAGAATTTC GATCTCGGCGTGGAAGCTGCCGAGCATCTCATATCTTTAGAGCCAGAGAATCCTGGCCATTATGTGTTGCTTTCTAACAT GTATGCATTGTCAGGGAGGATGGATAAAGTAGAGTCAGTTAGAAATGTAATGATCCAAAGAGGACTGAAAAAGCAAGTGG GTTATAGCATCATTGATGTCAACAACAACAGTTACCTTTTTAGCATGGGTGATAAGTCACACCCTGAGACCAATGAGATT TATCAATATTTGGATGAATTGATTTGGAGGTGCAAGGAAGCAGGTTATGCACCTGTTCCCGAATCGGCAATGCACGAGTT GGAGGAAGAAGAAAGGGAGTATGCCCTTAGATATCATAGTGAGAAGCTGGCAGTGGCATTTGGGTTGATGAAAACTAGCC ATGGAGTGACTCTCAGGATTGTCAAGAACCTTCGGATGTGTGAGGACTGTCATGCTGCAATTAAGTTAATCTCTGCTGTC ACAAACAGAGAGATAGTTATTCGGGATAAGCTTCGTTTCCATCATTTCCGAGAAGGCTCATGTTCTTGTTTAGATTATTG GTGA
CDS sequence (LotjaGi4g1v0056100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGGAAAGAAAAGCATAGAGAAGAAGGACCAACAAAATCTGCAGAATACCAAGCAGTGGTACGTGCAGGCCCACA CGTGCGTCCCCTCCAGCAAGCTCACGCTCATCTCGTCGTCACCGGCTGCCACCGCAGCCGCGCCCTCATCACCAAGCTCC TCACACTCTCCTGCGCCGCCGGCTCCATCGCCTACACGCGCCGCCTCCTACGCGCCGCCATCAACCCCGACTCCTTCCTC TTCAACTCCCTCCTCAAAGCCACCTCCGCCTCCGGCTTCTCTCTCGACACCATCCTCTTCTACAGTCGCATGCTCCACTC CCGCATTGCACCTTCCTCTTACACTTTCACCTCCGTCTTCAAGGCCTGCGCTCACCTTTCCGCTCTCCGAGTTGGTACCG TTGTCCATTCCCACGTTTTCGTTTCTGGGTATGGCTCCAATCCCTTTGTCCAAGCCGCAATCGTCACGTTCTACGCGAAA TCTAGTGCGTTACCGGTTGCACGCAAGGTGTTCGATGAAATGCCTCAACGAAGTGTCGTTGCTTGGAACTCCATGATTTC GGGTTACGAGCAAAATGGGCTTCCCAATGAAGCGGTTGCGCTGTTTCGCGAGATGTGTGAACTCGGGGTTCGTCCTGATT CCGCGAGTTTTGTTTGTGTGTTATCGGCTTGCTCTCAATTGGGGTCTCTTGATTTGGGGTGTTGGGTGCATGACTGTGTT GTTAGCAGTGGGGTTCATGTTAATGTCGTTCTCGCTACCTCGTTGATAAACATGTTTTCGCGGTGTGGTGATGTGAGCAG AGCGCGAGCGGTTTTTGATTCGATGAATGAAGGGAATGTTATTGCGTGGACCGCTATGATATCCGGGTATGGTATGCATG GGCATGGTGTTCAAGCAATGGAGCTTTTTCATGATATGAAAGCACGAGGGCTAGCTCCTAACAGGGTCACTTTTGTTGCT GTCTTATCTGCATGTGCTCATGCAGGGCTAGTACATGAAGGGCGCCAAGTGTTTGCAAGCATGGGACATGAGTATGGTGT AGTTCCAGGAGTGGAGCACCATGTTTGTATGGTTGATATGCTTGGGAGGGCTGGGTTGCTCTGTGAAGCATACCAATTCA TCAAAGAACTTAGTCCTGAGGAGCTTGTTCCGGCGGTGTGGACCGCCATGCTTGGGGCTTGCAAGATGCATAAGAATTTC GATCTCGGCGTGGAAGCTGCCGAGCATCTCATATCTTTAGAGCCAGAGAATCCTGGCCATTATGTGTTGCTTTCTAACAT GTATGCATTGTCAGGGAGGATGGATAAAGTAGAGTCAGTTAGAAATGTAATGATCCAAAGAGGACTGAAAAAGCAAGTGG GTTATAGCATCATTGATGTCAACAACAACAGTTACCTTTTTAGCATGGGTGATAAGTCACACCCTGAGACCAATGAGATT TATCAATATTTGGATGAATTGATTTGGAGGTGCAAGGAAGCAGGTTATGCACCTGTTCCCGAATCGGCAATGCACGAGTT GGAGGAAGAAGAAAGGGAGTATGCCCTTAGATATCATAGTGAGAAGCTGGCAGTGGCATTTGGGTTGATGAAAACTAGCC ATGGAGTGACTCTCAGGATTGTCAAGAACCTTCGGATGTGTGAGGACTGTCATGCTGCAATTAAGTTAATCTCTGCTGTC ACAAACAGAGAGATAGTTATTCGGGATAAGCTTCGTTTCCATCATTTCCGAGAAGGCTCATGTTCTTGTTTAGATTATTG GTGA
Protein sequence (LotjaGi4g1v0056100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWKEKHREEGPTKSAEYQAVVRAGPHVRPLQQAHAHLVVTGCHRSRALITKLLTLSCAAGSIAYTRRLLRAAINPDSFL FNSLLKATSASGFSLDTILFYSRMLHSRIAPSSYTFTSVFKACAHLSALRVGTVVHSHVFVSGYGSNPFVQAAIVTFYAK SSALPVARKVFDEMPQRSVVAWNSMISGYEQNGLPNEAVALFREMCELGVRPDSASFVCVLSACSQLGSLDLGCWVHDCV VSSGVHVNVVLATSLINMFSRCGDVSRARAVFDSMNEGNVIAWTAMISGYGMHGHGVQAMELFHDMKARGLAPNRVTFVA VLSACAHAGLVHEGRQVFASMGHEYGVVPGVEHHVCMVDMLGRAGLLCEAYQFIKELSPEELVPAVWTAMLGACKMHKNF DLGVEAAEHLISLEPENPGHYVLLSNMYALSGRMDKVESVRNVMIQRGLKKQVGYSIIDVNNNSYLFSMGDKSHPETNEI YQYLDELIWRCKEAGYAPVPESAMHELEEEEREYALRYHSEKLAVAFGLMKTSHGVTLRIVKNLRMCEDCHAAIKLISAV TNREIVIRDKLRFHHFREGSCSCLDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 23 | 137 | 115 | 2.4E-8 | ||
| ProSiteProfiles | 77 | 111 | 35 | 7.914 | ||
| PANTHER | 131 | 239 | 109 | 5.0E-92 | – | |
| Gene3D | 138 | 278 | 141 | 1.8E-31 | ||
| ProSiteProfiles | 147 | 177 | 31 | 6.314 | ||
| SUPERFAMILY | 177 | 436 | 260 | 1.74E-6 | ||
| ProSiteProfiles | 178 | 212 | 35 | 13.033 | ||
| Pfam | 178 | 225 | 48 | 8.7E-13 | ||
| TIGRFAM | 180 | 214 | 35 | 8.6E-9 | ||
| ProSiteProfiles | 213 | 247 | 35 | 7.355 | ||
| PANTHER | 233 | 444 | 212 | 5.0E-92 | – | |
| ProSiteProfiles | 248 | 278 | 31 | 8.188 | ||
| Pfam | 253 | 277 | 25 | 0.0035 | ||
| ProSiteProfiles | 279 | 313 | 35 | 11.772 | ||
| Pfam | 279 | 326 | 48 | 4.7E-13 | ||
| Gene3D | 279 | 417 | 139 | 6.1E-28 | ||
| TIGRFAM | 282 | 314 | 33 | 9.6E-8 | ||
| ProSiteProfiles | 314 | 349 | 36 | 8.506 | ||
| TIGRFAM | 316 | 350 | 35 | 7.2E-5 | ||
| ProSiteProfiles | 350 | 384 | 35 | 6.895 | ||
| ProSiteProfiles | 417 | 451 | 35 | 7.925 | ||
| Pfam | 421 | 449 | 29 | 0.67 | ||
| Pfam | 454 | 577 | 124 | 1.8E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0056100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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