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LotjaGi4g1v0064700.3

Overview

Field Value
Gene ID LotjaGi4g1v0064700
Transcript ID LotjaGi4g1v0064700.3
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Rac-like GTP binding protein; TAIR: AT5G45970.1 RAC-like 2; Swiss-Prot: sp|Q6Z7L8|RAC7_ORYSJ Rac-like GTP-binding protein 7; TrEMBL-Plants: tr|I3SWP7|I3SWP7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0064700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:8092138..8098964) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTACAGCCAGATTTATCAAGTGTGTAACAGTTGGGGATGGAGCTGTGGGAAAGACATGCATGCTTATATCCTATAC CAGCAATACCTTTCCTACAGTATGTTCCAATTAGCATACTTATTGGTCATGGAAGGTTCAATTGTACATATATATACAGG GTTTAAAATTGTGGTTGCCATTGCCACTGTGTCGCAGAATTGCAGACAAGTGGAGGGTGATGCGGTTGCAATTCCGGTCT CTAGAACCGTTACGTTGCGGCTGCAATCGCAGTTGCGGACGAAAATTTGAAACCCTGCATATATCTATGAACTGGAATCA TGGTTTCAGGAGCTAGTTTTGAAGCTAATGCTCTTTCTTTTGCTATGGTTTTCTCTTTGTTAGGATTATGTTCCAACAGT GTTTGACAACTTCAGTGCCAATGTTGTGGTGGATGGTAGTACAGTTAATCTTGGTCTATGGGACACTGCAGGTTTGTTAA TCTTCTTTCTGAGGGCTATGTTTCACATTCACTTTAAATGCCAAATTTTGATGAATGAAAATATTGTGTTTGCTTTGTAT AATTTGTGTGGTTACAGGACAAGAAGATTACAACAGGCTAAGGCCTTTGAGTTACAGAGGAGCTGATGTGTTTTTGCTGT GCTTTTCTCTAATTAGTAAAGCAAGTTATGAGAATATTTCCAAAAAGGTTTTTTAACTATCTGCCCCAAATCCTCTTGTT CAGTTACTGTAATTTGGTTTTCAGTTGAATTGTGATGTGAAATCCTTAAAACATATGTATTTGTTGGATTCTTGACAAAC AGTGGATACCTGAGCTGAGACATTATGCTCCAAATGTGCCTATTGTGCTGGTGGGAACAAAACTAGGTATGATAATTCCA TCAAAGTAGCATAGCAAAATTCATCATAATTTGTCAGTAATGATAGTCTTCTTCATATTCCTCTCTCTCTCTCTAGCTAT TCAACTCTACTTCTGTACAATTGTGAAACTTCCATAATTAAACATTAACTAGAGATCTAGCTAAATAAGTCCTTATAAAG GGGAGGGAAACCAGGGCAACGCTCACCAAAGTTTAAAACTGTGGTCGCGGTTGTGGTTGTAGTTAAATTGCGGGATTACA GACAAATGCGGGTGAATGCGGCTGCAATTGCAGTCACGATTGTGGGTGTCAAGAATAATTGGCTTGATGCCTTCTCTGAT TCTATTCTCTTCTATATATAATACAATTACATTTACAAGCAATAATGACTAATTAACCCTAATTCCTAATTTGCACAACC TAAATTAGGAAGTCTAATTCTGTACATTCAAATAGGAATATTCTTGATTCTATTTCCTAATTTCTCAAACATAAAATAGG AAACAATCATTAATTGCAGATATCCTCATTGACATCCCCCCTCAAATTGATGCGGTTTGTCAAGAAGCATCAATTTGCTA AGAAGAAACTGGTGACGGGCACGAGGAACCGCTTTAGTGAAGATATCTGCAAGCTGAAGCTGCGAGGAGACATGAGGAAG AGAGATAACATGATCATCAAGAGCCTCACGAATGGAGTGACAATCCACTTCAATATGCTTAGTGCGCTCATGAAAAACTG GATTAGTAGCAATCTGAATAGCGCTTGTGTTGTCAGCATGGAGAGGCGTAACATTGATTTGAGGGAATCCGAGTTCAGCC AATAAACCACGAAGCCAAGTTATTTCAGAGCAAGCAGTGGACATAGCTCGATATTCAGACTCAGTGGATGACTTGGAAAC GCGGGCTTGCTTTTTGCTCTTCCAAGAAATTAAGGCCGGACCAAGGAACATGCACCAACCGGACACCGACCTTCGTGTAT CAGCACAACCTGCCCAATCAGCATCACTATAGGCAAGCAAAGTAAGAGATGTACTGGCCGGAAAAAATAATCCTCGATAA GACGTTCCTTTCAAATAGCGAATGATGCGACGAACAGCAGCCAAGTGAAGATGACGAGGAGTGTGCATGAATTGACTAAC TTGTTGCACTGCAAAGGAAATATCTGGACGTGTAATAGTCAAATAGTTAAGACTTCCCACCAATTGACGATACAATAAAG GATCAGGCAAAAGATCACCCTCATCACGATGATATTTGACATTAACTTCAAGAGGAGTATCCACAGGGACAACAGATTGA AGACCAGCCAAAGAAACTAAGTCCTCAGTATACTTGTGCTGATTGAGAAAAATACCTTTGGAGTCAGAATGAACCTCAAG CCCCAAGAAATAGTGAAGATACCCAAGATCCTTCATGTGAAAGGAAGCTTGAAGCTGCTGTTTAAGTAGTTGTATGGACG CTTGATCAGAGCCAGTAATGATCATGTCATCAACATAAATGAGAAGAAGAACAATACCAGCGGACGTGTGATGAATGAAT AAGGAGGAATCATATTGGCTCTGAGAAAAAGAGAATCCAAGAAGGGTAGACCGAAATTTCTCAAACCATGCCCGAGGAGC CTGCCGCAAGCCATATAAAGAACGCTTGACTTTGCACACGCCTTCAGAGGAAGAAAACAAGCCTGGAGGAGGTTTCATAA AAATATCTTCTGCTAAATCACCATGAAGAAATGCATTCTTCACATCCATTTGATATAGGGACCAACCTTTAGAGGCAGCA ATAGAAAGGATTGTGCGGACAGTGGTCATCTTTGCCACAGGTGCAAAGGTCTCATCATAATCCACCCCGTATTCTTGTTT GTTACCCAAAGCAACCAACCGGGCCTTATAACGATTGAGAGAACCATCAGAATTTAACTTCACAGAGTACACCCATTTGC AACCAATGGGTTTAACACCAAGAGGGCAAGGGACTATGTCCCAAGTGAAATTCTCCTGAAGTGCTTGTAGCTCATCTTGC ATGGCCTTTACCCAACGCATGTCCTTAACAGCCTGCGAATAACATGTGGGAATAGGTATACTAGATAAAGTAGCAGTAAG AGAAGTAGGCTCCCATCCATACCTATTAGGTGTTCGATGCAGGCGAGTGGATCGACGCAGGGTAACTGGTGCTGGTTCAG GCGGAGGATCAGCATCGGGAGGGGGCAAAGTAGGAGGTCGTCTAGTATACACCTGTCCAGGTTTAAAACGTTCTATAGGA CGAGGAACATCAGCAAAGGTATGAAGAGGAACAAAACTGTTAGAATCAGAAGGAAAACATGGAAAATAATATTGATAATC AAAGAAAACCACATTTCTAGAAATGCGCATGCGTTGAGCAATGACATCATAACACAAAAATCCCTTTTGATTAGGAGAAT AACCCATAAAGGCACACTGCACAGATTGCGCGCCGAGTTTATGACGCTCTAGAGGTGGCAAGTGCACAAAGCAGACACAC CCAAACGTGTGAAGGTCATCATAACTTGGCTGTGTGTTATAGAGACGAAAGAAAGGAGAATCAAAAGCCAAAACCTGAGA TGGGAGGCGGTTGATCAAGTATACAGCCGCAGACAAAGCTTCAACCCAGAATTGAGAAGGAACAGAGGCTTGAAGCAGTA ATGTTCGGGTAACATCAAGCAAGTGCCGATTTTTGCGTTCTGCAACGCCATTTTGCTGCGGCGTATATGGACAAGAACAT TGTGAAAGAATCCCCTTCTGCCGCAAGTACTCTTGAAAGTTGTGAGAGATATATTCCCCACCAGAATCAGTACGCAAAAC CTTGATACCTGTGTCAAACTGAGTCTCTATATATGCCAAAAACTGTTTAAACATACAAAAGACATCAGATTTAGAGCGGA GAAAATAGATCCATGTAAACCGGCTATAGTCATCAATAAAGGTTACAAAGTATTTATACTTTGCATGAGACAAGACCGGT GACATACCCCAAACATCACTATGAATAAGATCAAAACATTTAGTGGCACGATGAGCTATAGAGGGAAAGGGAAGAGTCTT GCTTTTAGCAAGTTTGCACACAGAACAATCAAATGCAGAAGTAGGAATAACAATTTTATTACTCAACAATCCAGATTTCA ATAAATGAGCTAAAACAACTGAGTTTGGGTGACCCAATTTTCTATGCCAGTCCTCATACTTATTTGGGACACCATTACAA GCAAAAGACAAAATATTCGACAGAGAAAACTGGAGAGGAAATAGTCTGCCCACTTTAGGCCCCCTCGCGATCACTTTCCC CGACGCCTGATCCTGCACAGAACAACCATCACGAGAGAAATTAACATTACAATTGTTATCGACCAATTGTCCAACGGAAA TCAAATTGGAAACAAGCCCTGGGGAAACAAACACATCTCGAAAGGAGGAATTGATGTCTCCAACAGCAGAAATAGAAAGA ATATTACCATCAGCAATTTGGATATTTTGGGTGCCATGATAAGTGTGAACATTGTGCAATTTTTCAAGGGAACCAGTCAT GTGGTTAGAGGCCCCAGAATCAACAAACCAAGGTTGAGATGTAGGTTTGGACTTACCTTGAAGGCCCAAGGCAGAAAGAG CTGCGAGTACCATTTGTTGTACGGCCTCGGGAGTCAAGGAAGCAGCACTAGAAGTTGTAGGAGCAGAAGTCTGGTCCAGA GAAGTTGTAGTGGCGTGTAAGGCATGCAACGGCTTCCGCGGGGGTCGAGTTGGGCAATCTGCGAGGATGTGACCCTGTTG CTTACAATAGTTGCAAAATTTCTTACTGCAATTCCGAGCAAGATGACCAAATTGCTTGCAAGAAAAGCATTGAACTTGGC GCATATCACGACCTTTGCCTTTACTTTGGGCAGCGTAGGCAACAGAGACAGGATCAGCAACAAAGTCACCACGGGATAAG GTCAGAAGACGCTGCTCTTCTCGAAGTAATTCTGCAAGACACACGTCCAAGGAAGGGGCTGGATTCCTGTTCAGCAAAGC AGCACGCACAGCTTCAAATTCAGGTCGAAGCTTCATGAGAAATTGGTCCCGTTGGCTAATCTGATAAACTTTTTGGACAG CAGTGAGTGAATCTTTAGAAACATCAGCGTGTAAGATTGCTGAATGATCAGCCCAAAGAGTAAGGAACCCGGAGTAATAG TCCTGAATAGAGAGATTTCCCTGACGATAGTTAGCAATGTCGAGCTCCAACTGGAACCGTTTGGCAACATTGTCCTGATT GTAAATACGCTTCAGATAGTCCCACATATCTTTAGCAGTAGAGAAAGCACGTAAGTTGTTGATCATGTGAGGTTCAACAG AAGCCAGAATCCAGGTTATAACTTGGGCGTCCTTTGTTTGCCACGCCGCCAATGTCGTTTTCTCTGCCGGAGCAGTGGAC TGAGCTACATGATCGTCCCAAAGGCCTTTCCCTTTCACGAACATTTGGAACTGAAACTCCCAAGCGCCATAATTTTTGCC CGTAAAGCGGACACAGAAGTTTTCAAAAGTCTTTTCGGAAGCCATGAGGAGCAAAGCAAACTGACCAGAAACAAGATAGC ACAAAAAAAACAGCAACGTTCCAGAAACAGAACAGCAAGAAAAGAAACAGAGCAGCGAACCAGGAATAAAAGCAACGAAC CAGGATGGGCTACAGCAGCACAACACGAACCAGAATCAGAGCAACGAACCAGAGAGCCAAGATGAACCACGAAGGAGGCA CGATGTTGATACGGATAGAAGAAGCAAGAGCGTGTCGCTCTTAGCACACAAGGAAACGGCACAAGAGAAGTGAGAAGACT CGTGATACCATGTCAAGAATAATTGGCTTGATGCCTTCTCTGATTCTATTCTCTTCTATATATAATACAATTACATTTAC AAGCAATAAGGACTAATTAACCCTAATTCCTAATTTGCACAACCTAAATTAGGAAGTCTAATTCTGTACATTCAAATAGG AATATTCTTGATTCTATTTCCTAATTTCTCAAACATAAAATAGGAAACAATCATTAATTGCAGATATCCTCATTGACAGT GGGAACTAAAAACCCTTAATGTTTGCGGCTGCAATTGTAGTTTGTGGCATGACAGAAAATAGAGGAAATAAGACCAAGTT ACATATTTGAGATCATCAATATGTCTAATGTTTAAACAGTTTCATATGTGAAATCTTCCATTTCGTGCAAAGTTTCAGTT GGTCATTGCTTATAAAACAAGCAATGCTTATAAATCATAACTTTTGCTAATGAACTTCAAGGCTAACAGTAGTTTTTTTT TAAATCTTATGTATGTACAGATTTGCGAGACGACAAGCAATTTCTGATTGATCATCCTGGAGCCACAAGAATAACAACTG CTCAGGTAAGTCCACAACAAATTTAAAATAAAACAAAAAAATAAAAGATGCTTATGATTTAACAATGATTGTGTTAAGCA GGGTGAAGAGTTAAAGAAGCTGATTGGTGCAGTCACTTATATTGAGTGCAGCTCTAAAACTCAGCAGGTAAATTATAACC ATTTCATTGGACTCAGCATCTTTTAGCCATATTTTGTAGCAAACTCAAACTCTAGATTAAGATGTAGTTAAAGGAACTTG TGATCTCTGTAAGTATTCAATTAAATGCAGTAATAGGTGATCCCTGATTCTATCTATTCAATTGCATTGAGAATTACTGT TATAGCATGTTCGGATCAACTTATTTTCCCTCATAATCAATCCTGGCATTCTGAAGCTACACACATAAGTTTCTCATGAA AGTTGATTTTATCTTTAGAATCAAATGTCGAAGAATTGCCAACATGTACTTAAGCAGTTGAAAGAATTCACACTTTTTTT TGTTGCAGAATGTGAAGGTAGTTTTTGATGCTGCAATAAAGGTTGCATTGAGGCCACCAAAGCTAAAGAAGAAACCGCAC AAGAAAAGGACCTGCACTTTCCTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0064700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTACAGCCAGATTTATCAAGTGTGTAACAGTTGGGGATGGAGCTGTGGGAAAGACATGCATGCTTATATCCTATAC CAGCAATACCTTTCCTACAGATTATGTTCCAACAGTGTTTGACAACTTCAGTGCCAATGTTGTGGTGGATGGTAGTACAG TTAATCTTGGTCTATGGGACACTGCAGGACAAGAAGATTACAACAGGCTAAGGCCTTTGAGTTACAGAGGAGCTGATGTG TTTTTGCTGTGCTTTTCTCTAATTAGTAAAGCAAGTTATGAGAATATTTCCAAAAAGTGGATACCTGAGCTGAGACATTA TGCTCCAAATGTGCCTATTGTGCTGGGTGAAGAGTTAAAGAAGCTGATTGGTGCAGTCACTTATATTGAGTGCAGCTCTA AAACTCAGCAGAATGTGAAGGTAGTTTTTGATGCTGCAATAAAGGTTGCATTGAGGCCACCAAAGCTAAAGAAGAAACCG CACAAGAAAAGGACCTGCACTTTCCTTTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0064700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV FLLCFSLISKASYENISKKWIPELRHYAPNVPIVLGEELKKLIGAVTYIECSSKTQQNVKVVFDAAIKVALRPPKLKKKP HKKRTCTFL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24072
1 115 115 3.5E-107 –
PANTHER
PTHR24072:SF292
1 115 115 3.5E-107 –
ProSiteProfiles
PS51420
1 150 150 19.76
IPR003578
Gene3D
G3DSA:3.40.50.300
3 156 154 4.1E-52 –
SMART
SM00173
4 153 150 1.1E-14 –
SUPERFAMILY
SSF52540
6 150 145 1.45E-45
IPR027417
CDD
cd04133
6 151 146 4.13146E-107 –
TIGRFAM
TIGR00231
7 115 109 6.5E-29
IPR005225
SMART
SM00175
7 153 147 2.8E-16 –
PRINTS
PR00449
7 28 22 2.0E-22 –
Pfam
PF00071
8 115 108 3.8E-38
IPR001806
SMART
SM00174
9 153 145 9.2E-94 –
PRINTS
PR00449
30 46 17 2.0E-22 –
PRINTS
PR00449
47 69 23 2.0E-22 –
PANTHER
PTHR24072:SF292
116 169 54 3.5E-107 –
PANTHER
PTHR24072
116 169 54 3.5E-107 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0007264
Biological process Small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0064700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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